Pregenerated sensors for OPN1SW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058831Ensembl transcript IDs: ENSMUST00000080428.13, ENSMUST00000147483.3, ENSMUST00000173653.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTaGGAGTGCCACTTAGAAACTGTGACTGTTAAAATGGTCCATGTG | + |
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Preference number: 1 (lower is better) Translates to: PIHQKRSPSLTVLQR*ECHLETVTVKMVHV Trigger: CACATGGACCATTTTAACAGTCACAGTTTCTAAGTGGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR TCA 90 bp | TTTATCACTTCCATTTCTCCCTCACACTTAGTCCTTTGCTATTCCTaGGATTTCTGGCTCCTTCTCACAGCTACGGCTTTCCTACCTTCA | + |
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Preference number: 1 (lower is better) Translates to: FITSISPSHLVLCYS*DFWLLLTATAFLPS Trigger: TGAAGGTAGGAAAGCCGTAGCTGTGAGAAGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAAATGGAAGTGATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR-3UTR GCA 90 bp | CCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTGAGAGTGCCTGGTCCATGTGGCCCTaGTACAGGCAGAGAGTAACA | + |
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Preference number: 2 (lower is better) Translates to: PYTRNAALLSQFSRGESAWSMWP*YRQRVT Trigger: TGTTACTCTCTGCCTGTAGCAGGGCCACATGGACCA...GGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR CAA 90 bp | AAGCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTaGGCACTGCCCCATGCCAAGCTTATTCTAATACTGGATATATCA | + |
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Preference number: 2 (lower is better) Translates to: KLFDSLQVPGVCCLF*ALPHAKLILILDIS Trigger: TGATATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR-3UTR GCA 90 bp | AACACGCACTTCTTCGTTTCGAGGGGCTCCTTTTCCAGGAGCAGCAGGTGTAAGAATGCCACTGAAACATaGAAATTCATTTTGAGGACA | + |
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Preference number: 2 (lower is better) Translates to: NTHFFVSRGSFSRSSRCKNATET*KFILRT Trigger: TGTCCTCAAAATGAATTTGCATGTTTCAGTGGCATT...CTTACACCTGCTGCTCCTGGAAAAGGAGCCCCTCGAAACGAAGAAGTGCGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR-3UTR TCA 90 bp | GTGATTATATTCCAGGTCAGCCAAGGCTGCATAGAGAGACTCTGTCTCAAGAAATCTGTGTCAGATAAATaGGGTGAGGCCATTCTGATC | + |
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Preference number: 2 (lower is better) Translates to: VIIFQVSQGCIERLCLKKSVSDK*GEAILI Trigger: GATCAGAATGGCCTCACCTCATTTATCTGACACAGA...TTTCTTGAGACAGAGTCTCTCTATGCAGCCTTGGCTGACCTGGAATATAATCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR CAA 90 bp | TCTGTGATCTTTTATCACTTCCATTTCTCCCTCACACTTAGTCCTTaGCTATTCCTGAGATTTCTGGCTCCTTCTCACAGCTACGGCTTT | + |
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Preference number: 2 (lower is better) Translates to: SVIFYHFHFSLTLSP*LFLRFLAPSHSYGF Trigger: AAAGCCGTAGCTGTGAGAAGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAAATGGAAGTGATAAAAGATCACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR-3UTR CAA 90 bp | TTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCCCATGCCAAAATGTGGCGTTGTGTTaGCTGCTAGCAGGCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: FTAGARCLLPFLGTAPCQNVALC*LLAGQL Trigger: CAGCTGGCCTGCTAGCAGCAAACACAACGCCACATT...TTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR-3UTR CAA 90 bp | GCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCAATGTGGCGTTGTGTTaGCTGCTAGCAGGCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: ALRFTAGARCLLPFLGTANVALC*LLAGQL Trigger: CAGCTGGCCTGCTAGCAGCAAACACAACGCCACATT...GGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR GCA 72 bp | AGGAAGCTCTTCGATTCACTGCAGGTGCCCGGTGTCTaGTGCCTTTTCTTGGCACTGCCCCATGCCAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: RKLFDSLQVPGV*CLFLALPHAKL Trigger: AAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGCTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR GCA 72 bp | AAGCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTaGCTTTTCTTGGCACTGCCCCATGCCAAGCTTATT | + |
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Preference number: 3 (lower is better) Translates to: KLFDSLQVPGVC*LFLALPHAKLI Trigger: AATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR CCA 72 bp | TCTGATCCTGGCAGCCATAGCCCAGACTGCAGCAACTaGGAGAGGCCACATAAGGAAGCTCTTCGATTCACT | + |
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Preference number: 3 (lower is better) Translates to: SDPGSHSPDCSN*ERPHKEALRFT Trigger: AGTGAATCGAAGAGCTTCCTTATGTGGCCTCTCCCAGTTGCTGCAGTCTGGGCTATGGCTGCCAGGATCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR GCA 72 bp | GCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCCCATaGCAAGCTTATTCTAATACTGGATATATCATCTCA | + |
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Preference number: 3 (lower is better) Translates to: ARCLLPFLGTAP*QAYSNTGYIIS Trigger: TGAGATGATATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR TCA 72 bp | CAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTaGGAGTGCCACTTAGAAACTGTGACTGTTAAAATG | + |
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Preference number: 3 (lower is better) Translates to: QKRSPSLTVLQR*ECHLETVTVKM Trigger: CATTTTAACAGTCACAGTTTCTAAGTGGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| 3UTR TCA 72 bp | TCCATTTCTCCCTCACACTTAGTCCTTTGCTATTCCTaGGATTTCTGGCTCCTTCTCACAGCTACGGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: SISPSHLVLCYS*DFWLLLTATAF Trigger: GAAAGCCGTAGCTGTGAGAAGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR-3UTR CAA 90 bp | CTATCAATGGGCCTCTTTAAGAATTACTGTATTCCAGCCTTTAACCCTCAGGTTCTCACACTTAGTCCTTaGCTATTCCTGAGATTTCTG | + |
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Preference number: 3 (lower is better) Translates to: LSMGLFKNYCIPAFNPQVLTLSP*LFLRFL Trigger: CAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAG...AACCTGAGGGTTAAAGGCTGGAATACAGTAATTCTTAAAGAGGCCCATTGATAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR CCA 72 bp | AGAAAAGGAATTTTCCCAACTCCATTTACCTATCAATaGGCCTCTTTAAGAATTACTGTATTCCAGCCTTTA | + |
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Preference number: 3 (lower is better) Translates to: RKGIFPTPFTYQ*ASLRITVFQPL Trigger: TAAAGGCTGGAATACAGTAATTCTTAAAGAGGCCCATTGATAGGTAAATGGAGTTGGGAAAATTCCTTTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CCA 90 bp | GCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCCCCATGAAGGCTGCCTaGAGGCGGAAGGCCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: ALRFTAGARCLLPFLGTAPMKAA*RRKAQT Trigger: TGTCTGGGCCTTCCGCCTCCAGGCAGCCTTCATGGG...GGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | ACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTGAGAGTGCCACTTGGAGCAAGGTGGTACTaGGGCCCATCCCAGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: TPETQPFSHSSPEVRVPLGARWY*GPSQGP Trigger: GGGGCCCTGGGATGGGCCTCAGTACCACCTTGCTCC...AAGTGGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | CCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTGAGAGTGCCGGGCCACAGGAGCACTaGAGGCCCTCAGGGATGAAC | + |
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Preference number: 4 (lower is better) Translates to: PYTRNAALLSQFSRGESAGPQEH*RPSGMN Trigger: GTTCATCCCTGAGGGCCTGCAGTGCTCCTGTGGCCC...GGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | AGCAACTGGGAGAGGCCACATAAGGAAGCTCTTCGATTCACTGCAGGTGCCCGGGCAGGCCCTCAGGGATaGACCTGCTCCAGCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: SNWERPHKEALRFTAGARAGPQG*TCSSQK Trigger: TTTTTGGCTGGAGCAGGTTCATCCCTGAGGGCCTGC...CCGGGCACCTGCAGTGAATCGAAGAGCTTCCTTATGTGGCCTCTCCCAGTTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | TTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCCCATGCCAACTCTTGCTGCTGAGCTaGCACAGCTCTGAGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: FTAGARCLLPFLGTAPCQLLLLS*HSSESP Trigger: AGGACTCTCAGAGCTGTGGCAGCTCAGCAGCAAGAG...TTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | TTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCCCATGCCAACTGCCATGGGCTTCCTaGACACCATCTCCAGAATGC | + |
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Preference number: 4 (lower is better) Translates to: FTAGARCLLPFLGTAPCQLPWAS*TPSPEC Trigger: GCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAG...TTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | ACACGCACTTCTTCGTTTCGAGGGGCTCCTTTTCCAGGAGCAGCAGGTGTAAGGGCAGACTCTTGCTGCTaGGCTGCCACAGCTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: TRTSSFRGAPFPGAAGVRADSCC*AATALR Trigger: TCTCAGAGCTGTGGCAGCTCAGCAGCAAGAGTCTGC...CCTTACACCTGCTGCTCCTGGAAAAGGAGCCCCTCGAAACGAAGAAGTGCGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CCA 90 bp | GTGGCCCTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTCCCATGAAGGCTGCCTaGAGGCGGAAGGCCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: VALLQAESNRKMKVTHQSPMKAA*RRKAQT Trigger: TGTCTGGGCCTTCCGCCTCCAGGCAGCCTTCATGGG...ACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAGGGCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | GCCCCATGCCAAGCTTATTCTAATACTGGATATATCATCTCAGATCCCCAGCAGGGAGCAAGGTGGTACTaGGGCCCATCCCAGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: APCQAYSNTGYIISDPQQGARWY*GPSQGP Trigger: GGGGCCCTGGGATGGGCCTCAGTACCACCTTGCTCC...CTGCTGGGGATCTGAGATGATATATCCAGTATTAGAATAAGCTTGGCATGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | AGTGTCAGGGGATCCAACACTCACATAGTCACACACACTGGCAGAACGCTGATGAGAAGGCGGGGATGGTaGCAAGCCGTAAGTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SVRGSNTHIVTHTGRTLMRRRGW*QAVSPA Trigger: GGCTGGACTTACGGCTTGTCACCATCCCCGCCTTCT...CATCAGCGTTCTGCCAGTGTGTGTGACTATGTGAGTGTTGGATCCCCTGACACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR GCA 90 bp | GGAAGCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACCGCTTCGATACTTGGTaGCCACAGTGTACCAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: GSSSIHCRCPVSAAFSWHRFDTW*PQCTSL Trigger: CAGACTGGTACACTGTGGGCACCAAGTATCGAAGCG...GTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | GCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTGCCACTCGCTTCGATACTTaGTGCCCACAGTGTACCAGT | + |
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Preference number: 4 (lower is better) Translates to: ALRFTAGARCLLPFLGTATRFDT*CPQCTS Trigger: ACTGGTACACTGTGGGCACCAAGTATCGAAGCGAGT...GGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | AGTGTCAGGGGATCCAACACTCACATAGTCACACACACTGGCAGAACGCTGATGGTGCATGCTTGGAGTTaGAGCGGATGCTGCCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SVRGSNTHIVTHTGRTLMVHAWS*SGCCRR Trigger: CCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCAC...CATCAGCGTTCTGCCAGTGTGTGTGACTATGTGAGTGTTGGATCCCCTGACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR TCA 90 bp | CTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCCACCGCAGGCCCTCAGGGATaGACCTGCTCCAGCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: LLQAESNRKMKVTHQSATAGPQG*TCSSQK Trigger: TTTTTGGCTGGAGCAGGTTCATCCCTGAGGGCCTGC...GGTGGCACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | GTGGCCCTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCAGACTCTTGCTGCTaGGCTGCCACAGCTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: VALLQAESNRKMKVTHQSADSCC*AATALR Trigger: TCTCAGAGCTGTGGCAGCTCAGCAGCAAGAGTCTGC...ACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAGGGCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | AACACGCACTTCTTCGTTTCGAGGGGCTCCTTTTCCAGGAGCAGCAGGTGTAAGCTGCCATGGGCTTCCTaGACACCATCTCCAGAATGC | + |
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Preference number: 4 (lower is better) Translates to: NTHFFVSRGSFSRSSRCKLPWAS*TPSPEC Trigger: GCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAG...CTTACACCTGCTGCTCCTGGAAAAGGAGCCCCTCGAAACGAAGAAGTGCGTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CCA 90 bp | AGTGTCAGGGGATCCAACACTCACATAGTCACACACACTGGCAGAACGCTGATGCACAGTGTACCAGTCTaGGCCACAGGAGCACTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SVRGSNTHIVTHTGRTLMHSVPV*ATGALQ Trigger: CTGCAGTGCTCCTGTGGCCCAGACTGGTACACTGTG...CATCAGCGTTCTGCCAGTGTGTGTGACTATGTGAGTGTTGGATCCCCTGACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CCA 90 bp | ACACGCACTTCTTCGTTTCGAGGGGCTCCTTTTCCAGGAGCAGCAGGTGTAAGGAGACACAGGAGCTCTTaGAAAAGAAGGCGGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: TRTSSFRGAPFPGAAGVRRHRSS*KRRRGW Trigger: CCATCCCCGCCTTCTTTTCCAAGAGCTCCTGTGTCT...CCTTACACCTGCTGCTCCTGGAAAAGGAGCCCCTCGAAACGAAGAAGTGCGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR TCA 90 bp | CTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCCACCATCACCACCACCATATaGCTCACCTCCCGTTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LLQAESNRKMKVTHQSATITTTI*LTSRSA Trigger: GGCTGAACGGGAGGTGAGTCATATGGTGGTGGTGAT...GGTGGCACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR CAA 72 bp | GATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTaGGCACTGCCCCATGCCAAGCTTATTCTAATACTG | + |
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Preference number: 4 (lower is better) Translates to: DSLQVPGVCCLF*ALPHAKLILIL Trigger: CAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | AAGTGTTACCCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTAGAAGACAAATCCCATaGAGGCTGCCTGGAGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: KCYPYTRNAALLSQFSRGRRQIP*RLPGGG Trigger: TCCGCCTCCAGGCAGCCTTCATGGGATTTGTCTTCT...ACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGGGTAACACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | CTCACCAGAGTGCCACCACTCCCCATCTTTCCCCTGTTAATGGTTAGGATTCTACGTGGTTCCGATTGTTaGCCATGTACATGGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: LTRVPPLPIFPLLMVRILRGSDC*PCTWPG Trigger: CCCTGGCCATGTACATGGTCAACAATCGGAACCACG...TAGAATCCTAACCATTAACAGGGGAAAGATGGGGAGTGGTGGCACTCTGGTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR GCA 90 bp | TGTAGATACTTAAATGTGGCGTTGTGTTTGCTGCTAGCAGGCCAGCTGAGGGGCCGCTTCGATACTTGGTaGCCACAGTGTACCAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: CRYLNVALCLLLAGQLRGRFDTW*PQCTSL Trigger: CAGACTGGTACACTGTGGGCACCAAGTATCGAAGCG...GCCCCTCAGCTGGCCTGCTAGCAGCAAACACAACGCCACATTTAAGTATCTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | GAAGTGTTACCCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGACACCATCTCCAGAATaGAAGCCCGGAACTCCCGTT | + |
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Preference number: 4 (lower is better) Translates to: EVLPIHQKRSPSLTVLQRTPSPE*KPGTPV Trigger: AACGGGAGTTCCGGGCTTGCATTCTGGAGATGGTGT...CCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGGGTAACACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | GGAAGCTCTTCGATTCACTGCAGGTGCCCGGTGTCTGCTGCCTTTTCTTGGCACTTTTGTAATGCAGTGTaGCCACCAGCACTATGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GSSSIHCRCPVSAAFSWHFCNAV*PPALWH Trigger: ATGCCATAGTGCTGGTGGCCACACTGCATTACAAAA...GTGCCAAGAAAAGGCAGCAGACACCGGGCACCTGCAGTGAATCGAAGAGCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | TGTAGATACTTAAATGTGGCGTTGTGTTTGCTGCTAGCAGGCCAGCTGAGGGGCACTCGCTTCGATACTTaGTGCCCACAGTGTACCAGT | + |
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Preference number: 4 (lower is better) Translates to: CRYLNVALCLLLAGQLRGTRFDT*CPQCTS Trigger: ACTGGTACACTGTGGGCACCAAGTATCGAAGCGAGT...GCCCCTCAGCTGGCCTGCTAGCAGCAAACACAACGCCACATTTAAGTATCTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | TGCTGCCTTTTCTTGGCACTGCCCCATGCCAAGCTTATTCTAATACTGGATATAGTGCATGCTTGGAGTTaGAGCGGATGCTGCCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: CCLFLALPHAKLILILDIVHAWS*SGCCRR Trigger: CCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCAC...TATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | GAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCCACCACTCCCCATCTTTTTTGTAATGCAGTGTaGCCACCAGCACTATGGCAT | + |
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Preference number: 4 (lower is better) Translates to: ESNRKMKVTHQSATTPHLFCNAV*PPALWH Trigger: ATGCCATAGTGCTGGTGGCCACACTGCATTACAAAA...AAGATGGGGAGTGGTGGCACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | GCTTATTCTAATACTGGATATATCATCTCAGATCCCCAGCAGGGAGGAGAAAAACACAGTGTACCAGTCTaGGCCACAGGAGCACTGCAG | + |
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Preference number: 4 (lower is better) Translates to: AYSNTGYIISDPQQGGEKHSVPV*ATGALQ Trigger: CTGCAGTGCTCCTGTGGCCCAGACTGGTACACTGTG...TTTTTCTCCTCCCTGCTGGGGATCTGAGATGATATATCCAGTATTAGAATAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR TCA 90 bp | CAATGGGCCTCTTTAAGAATTACTGTATTCCAGCCTTTAACCCTCAGGTTACTAAGAAGACAAATCCCATaGAGGCTGCCTGGAGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: QWASLRITVFQPLTLRLLRRQIP*RLPGGG Trigger: TCCGCCTCCAGGCAGCCTTCATGGGATTTGTCTTCT...TAGTAACCTGAGGGTTAAAGGCTGGAATACAGTAATTCTTAAAGAGGCCCATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR TCA 90 bp | TGCTGCCTTTTCTTGGCACTGCCCCATGCCAAGCTTATTCTAATACTGGATATAAAGAGGAAGTATCCGTaGCAGCTGGCGATGAAGACT | + |
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Preference number: 4 (lower is better) Translates to: CCLFLALPHAKLILILDIKRKYP*QLAMKT Trigger: AGTCTTCATCGCCAGCTGTCACGGATACTTCCTCTT...TATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTCACACTTAGTCCTTTGCTATTCCTGAGATTTCTGGCTCCTTCTCACTCCAGAGCACAAACATaGCGACCAAAGAGGAAGTAT | + |
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Preference number: 4 (lower is better) Translates to: FSLTLSPLLFLRFLAPSHSRAQT*RPKRKY Trigger: ATACTTCCTCTTTGGTCGCCATGTTTGTGCTCTGGA...GTGAGAAGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR TCA 90 bp | TTCCATTTCTCCCTCACACTTAGTCCTTTGCTATTCCTGAGATTTCTGGCTCCTGAAACTTCTGTTTTCTaGGAGCCAGACACGTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: FHFSLTLSPLLFLRFLAPETSVF*EPDTSD Trigger: ATCTGACGTGTCTGGCTCTCAGAAAACAGAAGTTTC...AGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAAATGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR TCA 90 bp | TGCTGCCTTTTCTTGGCACTGCCCCATGCCAAGCTTATTCTAATACTGGATATAGAAACTTCTGTTTTCTaGGAGCCAGACACGTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: CCLFLALPHAKLILILDIETSVF*EPDTSD Trigger: ATCTGACGTGTCTGGCTCTCAGAAAACAGAAGTTTC...TATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR GCA 90 bp | TTTCCCAACTCCATTTACCTATCAATGGGCCTCTTTAAGAATTACTGTATTCCACTCTTGCTGCTGAGCTaGCACAGCTCTGAGAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: FPNSIYLSMGLFKNYCIPLLLLS*HSSESP Trigger: AGGACTCTCAGAGCTGTGGCAGCTCAGCAGCAAGAG...TGGAATACAGTAATTCTTAAAGAGGCCCATTGATAGGTAAATGGAGTTGGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR GCA 90 bp | CTATCAATGGGCCTCTTTAAGAATTACTGTATTCCAGCCTTTAACCCTCAGGTTACACCATCTCCAGAATaGAAGCCCGGAACTGCTTAT | + |
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Preference number: 4 (lower is better) Translates to: LSMGLFKNYCIPAFNPQVTPSPE*KPGTAY Trigger: ATAAGCAGTTCCGGGCTTGCATTCTGGAGATGGTGT...AACCTGAGGGTTAAAGGCTGGAATACAGTAATTCTTAAAGAGGCCCATTGATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CCA 90 bp | ACTCCATTTACCTATCAATGGGCCTCTTTAAGAATTACTGTATTCCAGCCTTTACGTAAGTCCAGCCCGTaGTTCCGATTGTTGACCATG | + |
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Preference number: 4 (lower is better) Translates to: TPFTYQWASLRITVFQPLRKSSP*FRLLTM Trigger: CATGGTCAACAATCGGAACCACGGGCTGGACTTACG...TAAAGGCTGGAATACAGTAATTCTTAAAGAGGCCCATTGATAGGTAAATGGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| 3UTR CAA 72 bp | TTTTATCACTTCCATTTCTCCCTCACACTTAGTCCTTaGCTATTCCTGAGATTTCTGGCTCCTTCTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: FYHFHFSLTLSP*LFLRFLAPSHS Trigger: GCTGTGAGAAGGAGCCAGAAATCTCAGGAATAGCAAAGGACTAAGTGTGAGGGAGAAATGGAAGTGATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS GCA 90 bp | GGCATTGAGTGGGGTCCCCACAAAGAAGACAAATCCCATGAAGGCTaGCTGGAGGCGGAAGGCCCAGACAGGAGCAAGGTGGTACTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GIEWGPHKEDKSHEG*LEAEGPDRSKVVLR Trigger: CCTCAGTACCACCTTGCTCCTGTCTGGGCCTTCCGCCTCCAGGCAGCCTTCATGGGATTTGTCTTCTTTGTGGGGACCCCACTCAATGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | ACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTGAGAGTGCCACTTTGTCGTAGCAGACTCTaGCTGCTGAGCTGCCACAGC | + |
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Preference number: 5 (lower is better) Translates to: TPETQPFSHSSPEVRVPLCRSRL*LLSCHS Trigger: GCTGTGGCAGCTCAGCAGCAAGAGTCTGCTACGACA...AAGTGGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 90 bp | AAACTTCTGTTTTCTGAGAGCCAGACACGTCAGATTCGTCTGCCATaGGCTTCCTGCACACCATCTCCAGAATGCAAGCCCGGAACTCCC | + |
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Preference number: 5 (lower is better) Translates to: KLLFSESQTRQIRLP*ASCTPSPECKPGTP Trigger: GGGAGTTCCGGGCTTGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGTGTCTGGCTCTCAGAAAACAGAAGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | AGTGTCAGGGGATCCAACACTCACATAGTCACACACACTGGCAGAACGCTGATGAGTGCATGCTTGGAGTaGAAGCGGATGCTGCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SVRGSNTHIVTHTGRTLMSACLE*KRMLPK Trigger: CTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACT...CATCAGCGTTCTGCCAGTGTGTGTGACTATGTGAGTGTTGGATCCCCTGACACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CAA 90 bp | CTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCCACCAGTGCATGCTTGGAGTaGAAGCGGATGCTGCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: LLQAESNRKMKVTHQSATSACLE*KRMLPK Trigger: CTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACT...GGTGGCACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | GCCCTGCTACAGGCAGAGAGTAACAGGAAAATGAAGGTGACTCACCAGAGTGCCACCATCAGTGCATGCTaGGAGTTGAAGCGGATGCTG | + |
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Preference number: 5 (lower is better) Translates to: ALLQAESNRKMKVTHQSATISAC*ELKRML Trigger: CAGCATCCGCTTCAACTCCAAGCATGCACTGATGGT...GGCACTCTGGTGAGTCACCTTCATTTTCCTGTTACTCTCTGCCTGTAGCAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | ACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGTGAGAGTGCCACTTCTCCCGTTCAGCCTTTaGTGTCGTAGCAGACTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TPETQPFSHSSPEVRVPLLPFSL*CRSRLL Trigger: CAAGAGTCTGCTACGACACAAAAGGCTGAACGGGAG...AAGTGGCACTCTCACCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 90 bp | GGACACCCCGATACCAATAATCCAAGTAGCCAGGACCACCATCAGTaGATGCTTGGAGTTGAAGCGGATGCTGCCGAAGGGTTTACAGAT | + |
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Preference number: 5 (lower is better) Translates to: GHPDTNNPSSQDHHQ*MLGVEADAAEGFTD Trigger: ATCTGTAAACCCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGGTATCGGGGTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 90 bp | AAACTTCTGTTTTCTGAGAGCCAGACACGTCAGATTCGTCTGCCATaGGCTTCCTGCACACCATCTCCAGAATGCAAGCCCGGAACTGCT | + |
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Preference number: 5 (lower is better) Translates to: KLLFSESQTRQIRLP*ASCTPSPECKPGTA Trigger: AGCAGTTCCGGGCTTGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGTGTCTGGCTCTCAGAAAACAGAAGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CAA 90 bp | AAAGGAAGTGTTACCCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCATGTCGTAGCAGACTCTaGCTGCTGAGCTGCCACAGC | + |
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Preference number: 5 (lower is better) Translates to: KGSVTHTPETQPFSHSSPCRSRL*LLSCHS Trigger: GCTGTGGCAGCTCAGCAGCAAGAGTCTGCTACGACA...TGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGGGTAACACTTCCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | GAAGTGTTACCCATACACCAGAAACGCAGCCCTTCTCTCACAGTTCTCCAGAGGCTCCCGTTCAGCCTTTaGTGTCGTAGCAGACTCTTG | + |
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Preference number: 5 (lower is better) Translates to: EVLPIHQKRSPSLTVLQRLPFSL*CRSRLL Trigger: CAAGAGTCTGCTACGACACAAAAGGCTGAACGGGAG...CCTCTGGAGAACTGTGAGAGAAGGGCTGCGTTTCTGGTGTATGGGTAACACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS TCA 90 bp | AAGGCCTCCAGAGCACAAACATGGCGACCAAAGAGGAAGTATCCGTaGCAGCTGGCGATGAAGACTGTGAAGACAGAGAAGATGCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: KASRAQTWRPKRKYP*QLAMKTVKTEKMQK Trigger: CTTCTGCATCTTCTCTGTCTTCACAGTCTTCATCGCCAGCTGTCACGGATACTTCCTCTTTGGTCGCCATGTTTGTGCTCTGGAGGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 90 bp | ACCCCGATACCAATAATCCAAGTAGCCAGGACCACCATCAGTGCATaGTTGGAGTTGAAGCGGATGCTGCCGAAGGGTTTACAGATGACA | + |
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Preference number: 5 (lower is better) Translates to: TPIPIIQVARTTISA*LELKRMLPKGLQMT Trigger: TGTCATCTGTAAACCCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGGTATCGGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 90 bp | AGTAGAAACTTCTGTTTTCTGAGAGCCAGACACGTCAGATTCGTCTaGCATGGGCTTCCTGCACACCATCTCCAGAATGCAAGCCCGGAA | + |
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Preference number: 5 (lower is better) Translates to: SRNFCFLRARHVRFV*HGLPAHHLQNASPE Trigger: TTCCGGGCTTGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGTGTCTGGCTCTCAGAAAACAGAAGTTTCTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 90 bp | CAACTTTTTGTAATGCAGTGTGGCCACCAGCACTATGGCATTGAGTaGGGTCCCCACAAAGAAGACAAATCCCATGAAGGCTGCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: QLFVMQCGHQHYGIE*GPHKEDKSHEGCLE Trigger: CTCCAGGCAGCCTTCATGGGATTTGTCTTCTTTGTGGGGACCCCACTCAATGCCATAGTGCTGGTGGCCACACTGCATTACAAAAAGTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | CTCACCAGAGTGCCACCACTCCCCATCTTTCCCCTGTTAATGGTTAGGATTCTAACCATCAGTGCATGCTaGGAGTTGAAGCGGATGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LTRVPPLPIFPLLMVRILTISAC*ELKRML Trigger: CAGCATCCGCTTCAACTCCAAGCATGCACTGATGGT...TAGAATCCTAACCATTAACAGGGGAAAGATGGGGAGTGGTGGCACTCTGGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS-3UTR CAA 90 bp | TGCTGCCTTTTCTTGGCACTGCCCCATGCCAAGCTTATTCTAATACTGGATATAAGCCCGTGGTTCCGATaGTTGACCATGTACATGGCC | + |
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Preference number: 5 (lower is better) Translates to: CCLFLALPHAKLILILDISPWFR*LTMYMA Trigger: GGCCATGTACATGGTCAACAATCGGAACCACGGGCT...TATATCCAGTATTAGAATAAGCTTGGCATGGGGCAGTGCCAAGAAAAGGCAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CAA 90 bp | GTGATTATATTCCAGGTCAGCCAAGGCTGCATAGAGAGACTCTGTCTCAAGAAATACTCGCTTCGATACTaGGTGCCCACAGTGTACCAG | + |
|
Preference number: 5 (lower is better) Translates to: VIIFQVSQGCIERLCLKKYSLRY*VPTVYQ Trigger: CTGGTACACTGTGGGCACCAAGTATCGAAGCGAGTA...TTTCTTGAGACAGAGTCTCTCTATGCAGCCTTGGCTGACCTGGAATATAATCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS-3UTR CAA 90 bp | TTTCCCAACTCCATTTACCTATCAATGGGCCTCTTTAAGAATTACTGTATTCCACCGTGGTTCCGATTGTaGACCATGTACATGGCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FPNSIYLSMGLFKNYCIPPWFRL*TMYMAR Trigger: CCTGGCCATGTACATGGTCAACAATCGGAACCACGG...TGGAATACAGTAATTCTTAAAGAGGCCCATTGATAGGTAAATGGAGTTGGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS TCA 72 bp | TGGAGGCGGAAGGCCCAGACAGGAGCAAGGTGGTACTaGGGCCCATCCCAGGGCCCCACCGAAGAGATATTC | + |
|
Preference number: 6 (lower is better) Translates to: WRRKAQTGARWY*GPSQGPTEEIF Trigger: GAATATCTCTTCGGTGGGGCCCTGGGATGGGCCTCAGTACCACCTTGCTCCTGTCTGGGCCTTCCGCCTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 72 bp | AAGGCGGGGATGGTGACAAGCCGTAAGTCCAGCCCGTaGTTCCGATTGTTGACCATGTACATGGCCAGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: KAGMVTSRKSSP*FRLLTMYMARA Trigger: TGCCCTGGCCATGTACATGGTCAACAATCGGAACCACGGGCTGGACTTACGGCTTGTCACCATCCCCGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080428.13 |
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| CDS CAA 90 bp | GCACACCATCTCCAGAATGCAAGCCCGGAACTCCCGTTCAGCCTTTaGTGTCGTAGCAGACTCTTGCTGCTGAGCTGCCACAGCTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: AHHLQNASPELPFSL*CRSRLLLLSCHSSE Trigger: CTCAGAGCTGTGGCAGCTCAGCAGCAAGAGTCTGCTACGACACAAAAGGCTGAACGGGAGTTCCGGGCTTGCATTCTGGAGATGGTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147483.3 |
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| CDS CAA 72 bp | CTCCAGAATGCAAGCCCGGAACTCCCGTTCAGCCTTTaGTGTCGTAGCAGACTCTTGCTGCTGAGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LQNASPELPFSL*CRSRLLLLSCH Trigger: GTGGCAGCTCAGCAGCAAGAGTCTGCTACGACACAAAAGGCTGAACGGGAGTTCCGGGCTTGCATTCTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147483.3 |
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| CDS GCA 72 bp | AGAGGAACCAGGTGTAGTACTCGCTTCGATACTTGGTaGCCACAGTGTACCAGTCTGGGCCACAGGAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: RGTRCSTRFDTW*PQCTSLGHRST Trigger: AGTGCTCCTGTGGCCCAGACTGGTACACTGTGGGCACCAAGTATCGAAGCGAGTACTACACCTGGTTCCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 ENSMUST00000173653.2 |
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| CDS GCA 72 bp | AGCCTTTTGTGTCGTAGCAGACTCTTGCTGCTGAGCTaGCACAGCTCTGAGAGTCCTCAGCAACTGGGAGTA | + |
|
Preference number: 6 (lower is better) Translates to: SLLCRSRLLLLS*HSSESPQQLGV Trigger: TACTCCCAGTTGCTGAGGACTCTCAGAGCTGTGGCAGCTCAGCAGCAAGAGTCTGCTACGACACAAAAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 72 bp | TTTTCTGAGAGCCAGACACGTCAGATTCGTCTGCCATaGGCTTCCTGCACACCATCTCCAGAATGCAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: FSESQTRQIRLP*ASCTPSPECKP Trigger: GGGCTTGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGTGTCTGGCTCTCAGAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 72 bp | GATACCAATAATCCAAGTAGCCAGGACCACCATCAGTaGATGCTTGGAGTTGAAGCGGATGCTGCCGAAGGG | + |
|
Preference number: 6 (lower is better) Translates to: DTNNPSSQDHHQ*MLGVEADAAEG Trigger: CCCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGGTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CCA 72 bp | GTAATGCAGTGTGGCCACCAGCACTATGGCATTGAGTaGGGTCCCCACAAAGAAGACAAATCCCATGAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: VMQCGHQHYGIE*GPHKEDKSHEG Trigger: GCCTTCATGGGATTTGTCTTCTTTGTGGGGACCCCACTCAATGCCATAGTGCTGGTGGCCACACTGCATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS CAA 90 bp | CCGATACCAATAATCCAAGTAGCCAGGACCACCATCAGTGCATGCTaGGAGTTGAAGCGGATGCTGCCGAAGGGTTTACAGATGACAACG | + |
|
Preference number: 6 (lower is better) Translates to: PIPIIQVARTTISAC*ELKRMLPKGLQMTT Trigger: CGTTGTCATCTGTAAACCCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGGTATCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 72 bp | CCAATAATCCAAGTAGCCAGGACCACCATCAGTGCATaGTTGGAGTTGAAGCGGATGCTGCCGAAGGGTTTA | + |
|
Preference number: 6 (lower is better) Translates to: PIIQVARTTISA*LELKRMLPKGL Trigger: TAAACCCTTCGGCAGCATCCGCTTCAACTCCAAGCATGCACTGATGGTGGTCCTGGCTACTTGGATTATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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| CDS GCA 72 bp | TTCTGTTTTCTGAGAGCCAGACACGTCAGATTCGTCTaGCATGGGCTTCCTGCACACCATCTCCAGAATGCA | + |
|
Preference number: 6 (lower is better) Translates to: FCFLRARHVRFV*HGLPAHHLQNA Trigger: TGCATTCTGGAGATGGTGTGCAGGAAGCCCATGGCAGACGAATCTGACGTGTCTGGCTCTCAGAAAACAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080428.13 ENSMUST00000147483.3 |
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