Pregenerated sensors for OPN1MW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031394Ensembl transcript IDs: ENSMUST00000033771.11, ENSMUST00000101457.10, ENSMUST00000127445.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTTGCTGTTGGTATAGGTaGAGATGCTTGCATGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLCCWYR*RCLHGC Trigger: GCACCCATGCAAGCATCTTCACCTATACCAACAGCA...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033771.11 |
||
| CDS-3UTR TCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCAATGTAGCCTTCAATaGCACACAGAGGGTGTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLQCSLQ*HTEGVP Trigger: TGGGACACCCTCTGTGTGTCATTGAAGGCTACATTG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033771.11 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTTTCTTTCTGTTGCTTTaGCACTGCTCGGATGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLFFLLL*HCSDGQ Trigger: CTGGCCATCCGAGCAGTGGCAAAGCAACAGAAAGAA...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCATAAGGCCAGTACCTaGTCCAACCAAAGATTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLHKAST*SNQRLV Trigger: CACCAATCTTTGGTTGGAGCAGGTACTGGCCTTATG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTTCAGATTCTTTCTGTTaGTTTGCCACTGCTCGGATG | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLSDSFC*FATARM Trigger: CATCCGAGCAGTGGCAAAGCAACAGAAAGAATCTGA...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCTTCTGTCTTGGAGGTaGTGGAAAGTTCAGAGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLLLSWR*WKVQSY Trigger: ATAGCTCTGAACTTTCCAGCACCTCCAAGACAGAAG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR CCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTTCTCGGCCTTCTGAGTaGACTCAGATTCTTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLSRPSE*TQILSV Trigger: AACAGAAAGAATCTGAGTCCACTCAGAAGGCCGAGA...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR CCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCTGTCTTGGAGGTGCTaGAAAGTTCAGAGCTATCAT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLLSWRC*KVQSYH Trigger: ATGATAGCTCTGAACTTTCCAGCACCTCCAAGACAG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCAAAGAGATGTAAGATaGAGTTTCGAAACTGCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLQRDVR*SFETAG Trigger: ACCGGCAGTTTCGAAACTGCATCTTACATCTCTTTG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033771.11 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTATTAGTGAAGACAGATaGAACGACCACAAGAATCAT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLISEDR*NDHKNH Trigger: ATGATTCTTGTGGTCGTTGCATCTGTCTTCACTAAT...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033771.11 |
||
| CDS-3UTR GCA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCAAAGAGATGTAAGATaGAGTTTCGAAACTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLQRDVR*SFETPS Trigger: AGAAGGAGTTTCGAAACTGCATCTTACATCTCTTTG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127445.2 |
||
| CDS TCA 90 bp | TGGGGCCTTCAAAGGGACCTTTGGTGCTGTTGCTGTTGGTATAGGTaGAGATGCTTGCATGGGTGCTATCCTCATAGTGGTCCAGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: WGLQRDLWCCCCWYR*RCLHGCYPHSGPVS Trigger: AGACACTGGACCACTATGAGGATAGCACCCATGCAAGCATCTTCACCTATACCAACAGCAACAGCACCAAAGGTCCCTTTGAAGGCCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000101457.10 |
||
| CDS GCA 90 bp | AAAGGGACCTTTGGTGCTGTTGCTGTTGGTATAGGTGAAGATGCTTaGATGGGTGCTATCCTCATAGTGGTCCAGTGTCTGTTCACCTGT | + |
|
Preference number: 5 (lower is better) Translates to: KGTFGAVAVGIGEDA*MGAILIVVQCLFTC Trigger: ACAGGTGAACAGACACTGGACCACTATGAGGATAGCACCCATGCAAGCATCTTCACCTATACCAACAGCAACAGCACCAAAGGTCCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000101457.10 |
||
| CDS-3UTR CAA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCCTTCAAAGGGACCTTaGGTGCTGTTGCTGTTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLPSKGP*VLLLLV Trigger: TACCAACAGCAACAGCACCAAAGGTCCCTTTGAAGG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033771.11 |
||
| CDS-3UTR CAA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTATTCTTTCTGTTGCTTaGCCACTGCTCGGATGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLILSVA*PLLGWP Trigger: TGGCCATCCGAGCAGTGGCAAAGCAACAGAAAGAAT...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR CAA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTCTCAGATTCTTTCTGTaGCTTTGCCACTGCTCGGAT | + |
|
Preference number: 5 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLLRFFL*LCHCSD Trigger: ATCCGAGCAGTGGCAAAGCAACAGAAAGAATCTGAG...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS-3UTR CAA 90 bp | TATGTTTATTTTACAAGGATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTGATGAGACTTCTGTCTaGGAGGTGCTGGAAAGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: YVYFTRIDEKGGKTWPKLDETSV*EVLESS Trigger: TGAACTTTCCAGCACCTCCAAGACAGAAGTCTCATC...AAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTATCCTTGTAAAATAAACATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000127445.2 |
||
| CDS TCA 72 bp | GATGGCCAGGGACCAGAGGCCTGTGATTCCACACAATaGGACAATGTAGCCTTCAATGACACACAGAGGGTG | + |
|
Preference number: 6 (lower is better) Translates to: DGQGPEACDSTQ*DNVAFNDTQRV Trigger: CACCCTCTGTGTGTCATTGAAGGCTACATTGTCTCATTGTGTGGAATCACAGGCCTCTGGTCCCTGGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000101457.10 |
||
| CDS TCA 72 bp | CAAAGGGACCTTTGGTGCTGTTGCTGTTGGTATAGGTaGAGATGCTTGCATGGGTGCTATCCTCATAGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: QRDLWCCCCWYR*RCLHGCYPHSG Trigger: ACCACTATGAGGATAGCACCCATGCAAGCATCTTCACCTATACCAACAGCAACAGCACCAAAGGTCCCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000101457.10 |
||
| CDS GCA 72 bp | TTTGGTGCTGTTGCTGTTGGTATAGGTGAAGATGCTTaGATGGGTGCTATCCTCATAGTGGTCCAGTGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: FGAVAVGIGEDA*MGAILIVVQCL Trigger: CAGACACTGGACCACTATGAGGATAGCACCCATGCAAGCATCTTCACCTATACCAACAGCAACAGCACCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033771.11 ENSMUST00000101457.10 |
||
| CDS TCA 72 bp | ATAGATGAGAAGGGAGGTAAAACATGGCCAAAGCTTTaGTGGATGGGACAGGTTGGAGGCAGACTTTATGCA | + |
|
Preference number: 6 (lower is better) Translates to: IDEKGGKTWPKL*WMGQVGGRLYA Trigger: TGCATAAAGTCTGCCTCCAACCTGTCCCATCCATCAAAGCTTTGGCCATGTTTTACCTCCCTTCTCATCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101457.10 |
||