Pregenerated sensors for OPALIN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050121Ensembl transcript IDs: ENSMUST00000087176.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCTTGCTGATTACCCTGCAAGGTCTGAGATCGAATGAACCTGCCTaGAACCATCCCCTAAAGGGGCAAGGCAGCCAGATGTGTCTTGGA | + |
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Preference number: 1 (lower is better) Translates to: ALLITLQGLRSNEPA*NHPLKGQGSQMCLG Trigger: TCCAAGACACATCTGGCTGCCTTGCCCCTTTAGGGGATGGTTGCAGGCAGGTTCATTCGATCTCAGACCTTGCAGGGTAATCAGCAAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 90 bp | ACTTCCTTGTGTCGGGGCATGGACGGCTCCATGCGAGCTTTATCCTaGGATATTCAAAAGGAAGAAATGGCTTCTGTCACATGTCTTTGG | + |
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Preference number: 1 (lower is better) Translates to: TSLCRGMDGSMRALS*DIQKEEMASVTCLW Trigger: CCAAAGACATGTGACAGAAGCCATTTCTTCCTTTTGAATATCTCAGGATAAAGCTCGCATGGAGCCGTCCATGCCCCGACACAAGGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CCA 90 bp | GTATTTATTTTGGTTCAGTCCAAGAAAGGTGTGGCAGCAGGAGTGTaGGGTAGCTGGCCAAACACTTTATCTGTCGTCAGGAAGGATAGT | + |
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Preference number: 1 (lower is better) Translates to: VFILVQSKKGVAAGV*GSWPNTLSVVRKDS Trigger: ACTATCCTTCCTGACGACAGATAAAGTGTTTGGCCAGCTACCCCACACTCCTGCTGCCACACCTTTCTTGGACTGAACCAAAATAAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CCA 90 bp | CCACAGAGAAGGTTTAGATTTCCTTGTCGACTTTGTGACTCTGGATaGATGATAAGTAGGATGGGAAGATGTGGGAAGAACTGGGTGAAG | + |
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Preference number: 1 (lower is better) Translates to: PQRRFRFPCRLCDSG*MISRMGRCGKNWVK Trigger: CTTCACCCAGTTCTTCCCACATCTTCCCATCCTACTTATCATCCATCCAGAGTCACAAAGTCGACAAGGAAATCTAAACCTTCTCTGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CAA 90 bp | CATACGGGGCTCATCTGGACACATAGTCGACTCACCTGGGTCGCCTaGCTGATTACCCTGCAAGGTCTGAGATCGAATGAACCTGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: HTGLIWTHSRLTWVA*LITLQGLRSNEPAC Trigger: GCAGGCAGGTTCATTCGATCTCAGACCTTGCAGGGTAATCAGCAAGGCGACCCAGGTGAGTCGACTATGTGTCCAGATGAGCCCCGTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR TCA 90 bp | GGCAGGACACTCGGGAGCCAAGCCGTTTCCCAAAGGCAGACTTCTCTCGATTCAGAAATTGATGTTGAGTaGGAGGCAGCTGACTCCTCG | + |
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Preference number: 2 (lower is better) Translates to: GRTLGSQAVSQRQTSLDSEIDVE*EAADSS Trigger: CGAGGAGTCAGCTGCCTCTCACTCAACATCAATTTC...TGAATCGAGAGAAGTCTGCCTTTGGGAAACGGCTTGGCTCCCGAGTGTCCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCCAGGCTATGGAATGATGCTGGGCCACATTCAGGTGGATCTTCTTACTCAGTCGAATGAACCTGCCTaGAACCATCCCCTAAAGGGG | + |
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Preference number: 2 (lower is better) Translates to: TPGYGMMLGHIQVDLLTQSNEPA*NHPLKG Trigger: CCCCTTTAGGGGATGGTTGCAGGCAGGTTCATTCGA...CTGAGTAAGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR TCA 90 bp | ATGGTGTGCAGAGTCGAAGTGAGGAGACTGCCAGTGACCACTAGAGTTATTTTTTCGCCTCTCCAAGCATaGACCCTGAGCACAGATTCC | + |
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Preference number: 2 (lower is better) Translates to: MVCRVEVRRLPVTTRVIFSPLQA*TLSTDS Trigger: GGAATCTGTGCTCAGGGTTCATGCTTGGAGAGGCGA...AAAAATAACTCTAGTGGTCACTGGCAGTCTCCTCACTTCGACTCTGCACACCAT 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR TCA 90 bp | AGTCCAAGAAAGGTGTGGCAGCAGGAGTGTGGGGTAGCTGGCCAAACACTTTATGGTGTGTCTCCTTGGTaGTTCTCAATCCCATTGAGT | + |
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Preference number: 2 (lower is better) Translates to: SPRKVWQQECGVAGQTLYGVSPW*FSIPLS Trigger: ACTCAATGGGATTGAGAATCACCAAGGAGACACACC...ATAAAGTGTTTGGCCAGCTACCCCACACTCCTGCTGCCACACCTTTCTTGGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CCA 90 bp | ACCCCAGGCTATGGAATGATGCTGGGCCACATTCAGGTGGATCTTCTTACTCAGAGATGTGGGAAGAACTaGGTGAAGAGGATTGATATC | + |
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Preference number: 2 (lower is better) Translates to: TPGYGMMLGHIQVDLLTQRCGKN*VKRIDI Trigger: GATATCAATCCTCTTCACCCAGTTCTTCCCACATCT...CTGAGTAAGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR GCA 90 bp | AGTCCAAGAAAGGTGTGGCAGCAGGAGTGTGGGGTAGCTGGCCAAACACTTTATGATAGTGATGAGTTCTaGATGCTCAACTTGAATTCC | + |
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Preference number: 2 (lower is better) Translates to: SPRKVWQQECGVAGQTLYDSDEF*MLNLNS Trigger: GGAATTCAAGTTGAGCATGCAGAACTCATCACTATC...ATAAAGTGTTTGGCCAGCTACCCCACACTCCTGCTGCCACACCTTTCTTGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGTAGCTGGCCAAACACTTTATCTGTCGTCAGGAAGGATAGTGATGAGTTCTTCTGTCACATGTCTTTaGTTAGGTTTTATGCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: GVAGQTLYLSSGRIVMSSSVTCL*LGFMPV Trigger: GACAGGCATAAAACCTAACCAAAGACATGTGACAGA...AGAACTCATCACTATCCTTCCTGACGACAGATAAAGTGTTTGGCCAGCTACCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR TCA 90 bp | GGATTGATATCTCTAGTGTCTACTAAGTGGAAATTGCTTCCTTTATTCCTGCTGTCCAAGCATGAACCCTaGGCACAGATTCCAGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: GLISLVSTKWKLLPLFLLSKHEP*AQIPGF Trigger: AAAACCTGGAATCTGTGCTCAGGGTTCATGCTTGGA...CAGCAGGAATAAAGGAAGCAATTTCCACTTAGTAGACACTAGAGATATCAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGTGTGCAGAGTCGAAGTGAGGAGACTGCCAGTGACCACTAGAGTTATTTTTCTAGTGTCTACTAAGTaGAAATTGCTTCCTTTATTC | + |
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Preference number: 2 (lower is better) Translates to: MVCRVEVRRLPVTTRVIFLVSTK*KLLPLF Trigger: GAATAAAGGAAGCAATTTCCACTTAGTAGACACTAG...AAAAATAACTCTAGTGGTCACTGGCAGTCTCCTCACTTCGACTCTGCACACCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CCA 90 bp | ATTCAGATTACAGGCCACAGAGAAGGTTTAGATTTCCTTGTCGACTTTGTGACTTTCAAAAGGAAGAAATaGCTTCTGTCACATGTCTTT | + |
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Preference number: 2 (lower is better) Translates to: IQITGHREGLDFLVDFVTFKRKK*LLSHVF Trigger: AAAGACATGTGACAGAAGCCATTTCTTCCTTTTGAA...AGTCACAAAGTCGACAAGGAAATCTAAACCTTCTCTGTGGCCTGTAATCTGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 72 bp | CGCCTTGCTGATTACCCTGCAAGGTCTGAGATCGAATaGACCTGCCTGCAACCATCCCCTAAAGGGGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: RLADYPARSEIE*TCLQPSPKGAR Trigger: CCTTGCCCCTTTAGGGGATGGTTGCAGGCAGGTTCATTCGATCTCAGACCTTGCAGGGTAATCAGCAAGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR GCA 72 bp | ATTACCCTGCAAGGTCTGAGATCGAATGAACCTGCCTaGAACCATCCCCTAAAGGGGCAAGGCAGCCAGATG | + |
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Preference number: 3 (lower is better) Translates to: ITLQGLRSNEPA*NHPLKGQGSQM Trigger: CATCTGGCTGCCTTGCCCCTTTAGGGGATGGTTGCAGGCAGGTTCATTCGATCTCAGACCTTGCAGGGTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 72 bp | AAGCACAGAACCCAAAACAGGCTCGGGGAGGGTAGATaGGCTCATCTGACTTCTCAAAGTGCTCAGCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: KHRTQNRLGEGR*AHLTSQSAQQH Trigger: GTGCTGCTGAGCACTTTGAGAAGTCAGATGAGCTCATCTACCCTCCCCGAGCCTGTTTTGGGTTCTGTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAACTTGAATTCCCAGAACCCCAGGCTATGGAATGATGCTGGGCCACATTCATATGCCTGTCCTAACTaGTGCCAAGCTGGCCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: LNLNSQNPRLWNDAGPHSYACPN*CQAGLG Trigger: ACCAAGGCCAGCTTGGCACAAGTTAGGACAGGCATA...TGAATGTGGCCCAGCATCATTCCATAGCCTGGGGTTCTGGGAATTCAAGTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 72 bp | GCTCAACTTGAATTCCCAGAACCCCAGGCTATGGAATaGTGCTGGGCCACATTCAGGTGGATCTTCTTACTC | + |
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Preference number: 3 (lower is better) Translates to: AQLEFPEPQAME*CWATFRWIFLL Trigger: GAGTAAGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGTTCTGGGAATTCAAGTTGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CCA 72 bp | TGCATGCTCAACTTGAATTCCCAGAACCCCAGGCTATaGAATGATGCTGGGCCACATTCAGGTGGATCTTCT | + |
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Preference number: 3 (lower is better) Translates to: CMLNLNSQNPRL*NDAGPHSGGSS Trigger: AGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGTTCTGGGAATTCAAGTTGAGCATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 72 bp | TGTCGGGGCATGGACGGCTCCATGCGAGCTTTATCCTaGGATATTCAAAAGGAAGAAATGGCTTCTGTCACA | + |
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Preference number: 3 (lower is better) Translates to: CRGMDGSMRALS*DIQKEEMASVT Trigger: TGTGACAGAAGCCATTTCTTCCTTTTGAATATCTCAGGATAAAGCTCGCATGGAGCCGTCCATGCCCCGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR TCA 72 bp | TCAGGAAGGATAGTGATGAGTTCTGCATGCTCAACTTaGATTCCCAGAACCCCAGGCTATGGAATGATGCTG | + |
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Preference number: 3 (lower is better) Translates to: SGRIVMSSACST*IPRTPGYGMML Trigger: CAGCATCATTCCATAGCCTGGGGTTCTGGGAATTCAAGTTGAGCATGCAGAACTCATCACTATCCTTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR GCA 72 bp | CACATACTTCCTTGTGTCGGGGCATGGACGGCTCCATaGGAGCTTTATCCTGAGATATTCAAAAGGAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: HILPCVGAWTAP*ELYPEIFKRKK Trigger: TTTCTTCCTTTTGAATATCTCAGGATAAAGCTCGCATGGAGCCGTCCATGCCCCGACACAAGGAAGTATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR GCA 72 bp | ACTTTATCTGTCGTCAGGAAGGATAGTGATGAGTTCTaGATGCTCAACTTGAATTCCCAGAACCCCAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: TLSVVRKDSDEF*MLNLNSQNPRL Trigger: TAGCCTGGGGTTCTGGGAATTCAAGTTGAGCATGCAGAACTCATCACTATCCTTCCTGACGACAGATAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CCA 72 bp | CATTCAGGTGGATCTTCTTACTCAGTTAAATCTTTCTaGAGGTGTGTCTCCTTGGTGATTCTCAATCCCATT | + |
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Preference number: 3 (lower is better) Translates to: HSGGSSYSVKSF*RCVSLVILNPI Trigger: AATGGGATTGAGAATCACCAAGGAGACACACCTCCAGAAAGATTTAACTGAGTAAGAAGATCCACCTGAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR-3UTR CAA 90 bp | ATTCAGATTACAGGCCACAGAGAAGGTTTAGATTTCCTTGTCGACTTTGTGACTTCTACTAAGTGGAAATaGCTTCCTTTATTCCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: IQITGHREGLDFLVDFVTSTKWK*LPLFLL Trigger: CAGCAGGAATAAAGGAAGCAATTTCCACTTAGTAGA...AGTCACAAAGTCGACAAGGAAATCTAAACCTTCTCTGTGGCCTGTAATCTGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR CCA 90 bp | AGGAGAAGGCAGGACACTCGGGAGCCAAGCCGTTTCCCAAAGGCAGACTTCTCTATTCTAGGCTCAGGCTaGGTACAAGCCACCAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: RRRQDTREPSRFPKADFSILGSG*VQATKV Trigger: GACTTTGGTGGCTTGTACCCAGCCTGAGCCTAGAAT...AGAGAAGTCTGCCTTTGGGAAACGGCTTGGCTCCCGAGTGTCCTGCCTTCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR GCA 90 bp | CCCAGAACCCCAGGCTATGGAATGATGCTGGGCCACATTCAGGTGGATCTTCTTGTCTTCACATATATGTaGCCTTCTTGGCTGCCCCGT | + |
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Preference number: 4 (lower is better) Translates to: PRTPGYGMMLGHIQVDLLVFTYM*PSWLPR Trigger: ACGGGGCAGCCAAGAAGGGCACATATATGTGAAGAC...AAGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGTTCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR TCA 90 bp | TTGCTGATTACCCTGCAAGGTCTGAGATCGAATGAACCTGCCTGCAACCATCCCCATTTCATGTGTGGGTaGCCGCCTAGGATTCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: LLITLQGLRSNEPACNHPHFMCG*PPRILR Trigger: TCTGAGAATCCTAGGCGGTCACCCACACATGAAATG...GGGATGGTTGCAGGCAGGTTCATTCGATCTCAGACCTTGCAGGGTAATCAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR CCA 90 bp | GGTAGCTGGCCAAACACTTTATCTGTCGTCAGGAAGGATAGTGATGAGTTCTGCTATATGTGCCCTTCTTaGCTGCCCCGTGGGTTCATT | + |
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Preference number: 4 (lower is better) Translates to: GSWPNTLSVVRKDSDEFCYMCPS*LPRGFI Trigger: AATGAACCCACGGGGCAGCCAAGAAGGGCACATATA...GCAGAACTCATCACTATCCTTCCTGACGACAGATAAAGTGTTTGGCCAGCTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CAA 72 bp | GTCAGGAAGGATAGTGATGAGTTCTGCATGCTCAACTaGAATTCCCAGAACCCCAGGCTATGGAATGATGCT | + |
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Preference number: 4 (lower is better) Translates to: VRKDSDEFCMLN*NSQNPRLWNDA Trigger: AGCATCATTCCATAGCCTGGGGTTCTGGGAATTCAAGTTGAGCATGCAGAACTCATCACTATCCTTCCTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR CCA 90 bp | CCCAGAACCCCAGGCTATGGAATGATGCTGGGCCACATTCAGGTGGATCTTCTTGATTCTCAGATATTTTaGGATTGTCATAGAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PRTPGYGMMLGHIQVDLLDSQIF*DCHRVL Trigger: CAGAACTCTATGACAATCCCAAAATATCTGAGAATC...AAGAAGATCCACCTGAATGTGGCCCAGCATCATTCCATAGCCTGGGGTTCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| 3UTR CAA 72 bp | TATTCAAAAGGAAGAAATGGCTTCTGTCACATGTCTTaGGTTAGGTTTTATGCCTGTCCTAACTTGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: YSKGRNGFCHMS*VRFYACPNLCQ Trigger: TTGGCACAAGTTAGGACAGGCATAAAACCTAACCAAAGACATGTGACAGAAGCCATTTCTTCCTTTTGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS GCA 90 bp | CAAAGCCACCAGCAGGGCTGTGGCCAGCAGGGATGGGATTCCGGCTaGCAGTCCAATAGAGGGACCACAGTCTGTGGCTTTGGCACTCGT | + |
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Preference number: 5 (lower is better) Translates to: QSHQQGCGQQGWDSG*QSNRGTTVCGFGTR Trigger: ACGAGTGCCAAAGCCACAGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS GCA 90 bp | TCCGGCAGGGGCTCCTCGCTTCCCGAGACAGTCTTCACATATATGTaGCCTTCTTGGCTGCCCCGTGGGTTCATTTCATGTGTGGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: SGRGSSLPETVFTYM*PSWLPRGFISCVGD Trigger: GTCACCCACACATGAAATGAACCCACGGGGCAGCCAAGAAGGGCACATATATGTGAAGACTGTCTCGGGAAGCGAGGAGCCCCTGCCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS-3UTR CAA 90 bp | GGATTGATATCTCTAGTGTCTACTAAGTGGAAATTGCTTCCTTTATTCCTGCTGCCACAGTCTGTGGCTTaGGCACTCGTGACAACTGGA | + |
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Preference number: 5 (lower is better) Translates to: GLISLVSTKWKLLPLFLLPQSVA*ALVTTG Trigger: TCCAGTTGTCACGAGTGCCAAAGCCACAGACTGTGG...CAGCAGGAATAAAGGAAGCAATTTCCACTTAGTAGACACTAGAGATATCAATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS CCA 72 bp | CAGCAAAGCCACCAGCAGGGCTGTGGCCAGCAGGGATaGGATTCCGGCTGCCAGTCCAATAGAGGGACCACA | + |
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Preference number: 6 (lower is better) Translates to: QQSHQQGCGQQG*DSGCQSNRGTT Trigger: TGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTGGTGGCTTTGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS GCA 72 bp | CAGCAGGGCTGTGGCCAGCAGGGATGGGATTCCGGCTaGCAGTCCAATAGAGGGACCACAGTCTGTGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QQGCGQQGWDSG*QSNRGTTVCGF Trigger: AAAGCCACAGACTGTGGTCCCTCTATTGGACTGGCAGCCGGAATCCCATCCCTGCTGGCCACAGCCCTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS GCA 72 bp | CCGAGACAGTCTTCACATATATGTGCCCTTCTTGGCTaGCCCGTGGGTTCATTTCATGTGTGGGTGACCGCC | + |
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Preference number: 6 (lower is better) Translates to: PRQSSHICALLG*PVGSFHVWVTA Trigger: GGCGGTCACCCACACATGAAATGAACCCACGGGGCAGCCAAGAAGGGCACATATATGTGAAGACTGTCTCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS GCA 72 bp | GGCTCCTCGCTTCCCGAGACAGTCTTCACATATATGTaGCCTTCTTGGCTGCCCCGTGGGTTCATTTCATGT | + |
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Preference number: 6 (lower is better) Translates to: GSSLPETVFTYM*PSWLPRGFISC Trigger: ACATGAAATGAACCCACGGGGCAGCCAAGAAGGGCACATATATGTGAAGACTGTCTCGGGAAGCGAGGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS CAA 72 bp | GCTGCCAGTCCAATAGAGGGACCACAGTCTGTGGCTTaGGCACTCGTGACAACTGGAGAGGATGTCGTATTC | + |
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Preference number: 6 (lower is better) Translates to: AASPIEGPQSVA*ALVTTGEDVVF Trigger: GAATACGACATCCTCTCCAGTTGTCACGAGTGCCAAAGCCACAGACTGTGGTCCCTCTATTGGACTGGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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| CDS TCA 72 bp | AGGATTCTCAGATATTTTGGGATTGTCATAGAGTTCTaGAATTTCACATGGTATCTCAGTCTCCTCTACGGG | + |
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Preference number: 6 (lower is better) Translates to: RILRYFGIVIEF*NFTWYLSLLYG Trigger: CCCGTAGAGGAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAGAATCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087176.8 |
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