Pregenerated sensors for OOSP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055933Ensembl transcript IDs: ENSMUST00000069760.13, ENSMUST00000119053.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGCCACAAATAATGCAGTATCTCTTCAGTACCAGGAACCAGCATTaGGGAGGAGGGTGGAAGTCTAGGTTACCCACATCAATAGATTCA | + |
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Preference number: 5 (lower is better) Translates to: WPQIMQYLFSTRNQH*GGGWKSRLPTSIDS Trigger: TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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| CDS GCA 90 bp | CCCACATCAATAGATTCACTTTCCCCAACGCACTCATCAGATGATTaGTTGTTATCAAGTTCATCTTGCGAAATTCTGGGAATGACACAC | + |
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Preference number: 5 (lower is better) Translates to: PTSIDSLSPTHSSDD*LLSSSSCEILGMTH Trigger: GTGTGTCATTCCCAGAATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAGTGAATCTATTGATGTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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| CDS CCA 90 bp | TTTAGCTATAACACGGAATGTAAAGTAATCACATTCCATGGATACTaGCTCTATCCCAGAACATCTCCACATCCCAAATATGAGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: FSYNTECKVITFHGY*LYPRTSPHPKYEQQ Trigger: CTGCTGCTCATATTTGGGATGTGGAGATGTTCTGGGATAGAGCCAGTATCCATGGAATGTGATTACTTTACATTCCGTGTTATAGCTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069760.13 |
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| CDS TCA 72 bp | CTGGCTCTATCCCAGAACATCTCCACATCCCAAATATaGGCAGCAGCAATCCTGAAGCAACGAAGGCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LALSQNISTSQI*AAAILKQRRPS Trigger: TGAAGGCCTTCGTTGCTTCAGGATTGCTGCTGCTCATATTTGGGATGTGGAGATGTTCTGGGATAGAGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069760.13 |
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| CDS TCA 72 bp | ATAATGCAGTATCTCTTCAGTACCAGGAACCAGCATTaGGGAGGAGGGTGGAAGTCTAGGTTACCCACATCA | + |
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Preference number: 6 (lower is better) Translates to: IMQYLFSTRNQH*GGGWKSRLPTS Trigger: TGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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| CDS GCA 72 bp | ATAGGTGAGCCAGGTATTAACAATAGTTCCATCAAATaGGTGCTGTATGAAAGTCCCACAGGAATGGATATC | + |
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Preference number: 6 (lower is better) Translates to: IGEPGINNSSIK*VLYESPTGMDI Trigger: GATATCCATTCCTGTGGGACTTTCATACAGCACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069760.13 |
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| CDS CAA 72 bp | GATTCACTTTCCCCAACGCACTCATCAGATGATTGCTaGTTATCAAGTTCATCTTGCGAAATTCTGGGAATG | + |
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Preference number: 6 (lower is better) Translates to: DSLSPTHSSDDC*LSSSSCEILGM Trigger: CATTCCCAGAATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAGTGAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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| CDS GCA 72 bp | ATAGATTCACTTTCCCCAACGCACTCATCAGATGATTaGTTGTTATCAAGTTCATCTTGCGAAATTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: IDSLSPTHSSDD*LLSSSSCEILG Trigger: TCCCAGAATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAGTGAATCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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| CDS CCA 72 bp | AACACGGAATGTAAAGTAATCACATTCCATGGATACTaGCTCTATCCCAGAACATCTCCACATCCCAAATAT | + |
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Preference number: 6 (lower is better) Translates to: NTECKVITFHGY*LYPRTSPHPKY Trigger: ATATTTGGGATGTGGAGATGTTCTGGGATAGAGCCAGTATCCATGGAATGTGATTACTTTACATTCCGTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069760.13 |
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| CDS GCA 72 bp | TTCATCAGGGCCAATGAGATCATCTGGATAAAACAGTaGCCTTTTAGCTATAACACGGAATGTAAAGTAATC | + |
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Preference number: 6 (lower is better) Translates to: FIRANEIIWIKQ*PFSYNTECKVI Trigger: GATTACTTTACATTCCGTGTTATAGCTAAAAGGGCACTGTTTTATCCAGATGATCTCATTGGCCCTGATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069760.13 |
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| CDS TCA 72 bp | ATCAATAGATTCACTTTCCCCAACGCACTCATCAGATaGTTGCTTGTTATCAAGTTCATCTTGCGAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: INRFTFPNALIR*LLVIKFILRNS Trigger: AGAATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAGTGAATCTATTGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069760.13 ENSMUST00000119053.3 |
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