Pregenerated sensors for OOG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066030Ensembl transcript IDs: ENSMUST00000080405.2, ENSMUST00000143978.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GAGGACAATTATTTCTTTTCAATGTGTCTCAGAAAATTAGGTGGTTaGCACATCTATGTTCCTTCCAGCAAGGGACATTCACTTAGGATA | + |
Preference number: 1 (lower is better) Translates to: EDNYFFSMCLRKLGG*HIYVPSSKGHSLRI Trigger: TATCCTAAGTGAATGTCCCTTGCTGGAAGGAACATAGATGTGTCAACCACCTAATTTTCTGAGACACATTGAAAAGAAATAATTGTCCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR CAA 90 bp | GCTCTGATTGAGACATACCAGCACCCCAGAAAGTCAACACATTTATaGTATGCAGTCAACAGATGGGAACAACATTTTCATGCAAGGATG | + |
Preference number: 2 (lower is better) Translates to: ALIETYQHPRKSTHL*YAVNRWEQHFHARM Trigger: CATCCTTGCATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTCAATCAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR-3UTR GCA 90 bp | GCTCTGATTGAGACATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAAACATCTTTTGTAGATaGAATACTCTTCACCAGCTC | + |
Preference number: 2 (lower is better) Translates to: ALIETYQHPRKSTHLLYANIFCR*NTLHQL Trigger: GAGCTGGTGAAGAGTATTGCATCTACAAAAGATGTT...TGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTCAATCAGAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR-3UTR CCA 90 bp | CACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACAACATTCTCAGAAAATTAGGTaGTTGACACATCTATGTTCC | + |
Preference number: 2 (lower is better) Translates to: HPRKSTHLLYAVNRWEQHSQKIR*LTHLCS Trigger: GGAACATAGATGTGTCAACCACCTAATTTTCTGAGA...ATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR CCA 72 bp | AGAAAGTCAACACATTTATTGTATGCAGTCAACAGATaGGAACAACATTTTCATGCAAGGATGCCTGTATTG | + |
Preference number: 3 (lower is better) Translates to: RKSTHLLYAVNR*EQHFHARMPVL Trigger: CAATACAGGCATCCTTGCATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR TCA 72 bp | AACATCTTTTGTAGATGCAATACTCTTCACCAGCTCTaGGGACAATTATTTCTTTTCAATGTGTCTCAGAAA | + |
Preference number: 3 (lower is better) Translates to: NIFCRCNTLHQL*GQLFLFNVSQK Trigger: TTTCTGAGACACATTGAAAAGAAATAATTGTCCTCAGAGCTGGTGAAGAGTATTGCATCTACAAAAGATGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS-3UTR CCA 90 bp | ATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAAAGCCTTCAACTTCATaGGATCCAGCCCATACCACA | + |
Preference number: 4 (lower is better) Translates to: IPAPQKVNTFIVCSQQMGKPSTS*DPAHTT Trigger: TGTGGTATGGGCTGGATCCCATGAAGTTGAAGGCTT...TCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS-3UTR TCA 90 bp | ACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACTCAAAGTGTCTAAGTTaGGGTTCTTTAGCATCGTTC | + |
Preference number: 4 (lower is better) Translates to: TSTPESQHIYCMQSTDGNSKCLS*GSLASF Trigger: GAACGATGCTAAAGAACCTCAACTTAGACACTTTGA...GTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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3UTR CAA 72 bp | GAGACATACCAGCACCCCAGAAAGTCAACACATTTATaGTATGCAGTCAACAGATGGGAACAACATTTTCAT | + |
Preference number: 4 (lower is better) Translates to: ETYQHPRKSTHL*YAVNRWEQHFH Trigger: ATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS-3UTR CAA 90 bp | ACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACAACATTTCAGTAGACACTGTCTaGCTAGCTCCATCAGAGTGG | + |
Preference number: 5 (lower is better) Translates to: TPESQHIYCMQSTDGNNISVDTV*LAPSEW Trigger: CCACTCTGATGGAGCTAGCAAGACAGTGTCTACTGA...AATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS GCA 90 bp | CACAGGTATCATGGCAGTCAAGATCTTTGTATGTCCATCAATAAATaGCTCCTTAAACATCACTGGGAACATCATATTGGGCAGGTCCTT | + |
Preference number: 5 (lower is better) Translates to: HRYHGSQDLCMSINK*LLKHHWEHHIGQVL Trigger: AAGGACCTGCCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACATACAAAGATCTTGACTGCCATGATACCTGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |
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CDS-3UTR CAA 90 bp | ATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGATTCAAAGTGTCTAAGTaGAGGTTCTTTAGCATCGTT | + |
Preference number: 5 (lower is better) Translates to: IPAPQKVNTFIVCSQQMGFKVSK*RFFSIV Trigger: AACGATGCTAAAGAACCTCAACTTAGACACTTTGAA...TCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS-3UTR CAA 90 bp | CTCTTCACCAGCTCTGAGGACAATTATTTCTTTTCAATGTGTCTCAGAAAATTATCTGCATGTACAATTTaGAACATTTCTATGACTGCG | + |
Preference number: 5 (lower is better) Translates to: LFTSSEDNYFFSMCLRKLSACTI*NISMTA Trigger: CGCAGTCATAGAAATGTTCAAAATTGTACATGCAGA...TAATTTTCTGAGACACATTGAAAAGAAATAATTGTCCTCAGAGCTGGTGAAGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080405.2 |
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CDS TCA 72 bp | AGCCAGGACTATTCTCAACTGGCTTCTCCTGTTCCATaGACTCTGGTAAGCCTTCAACTTCATGGGATCCAG | + |
Preference number: 6 (lower is better) Translates to: SQDYSQLASPVP*TLVSLQLHGIQ Trigger: CTGGATCCCATGAAGTTGAAGGCTTACCAGAGTTCATGGAACAGGAGAAGCCAGTTGAGAATAGTCCTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |
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CDS CCA 72 bp | ACTTCATGGGATCCAGCCCATACCACAACCAAATCATaGCTCAAAGTGATCTCTCTGAGTTTGCACCTACTG | + |
Preference number: 6 (lower is better) Translates to: TSWDPAHTTTKS*LKVISLSLHLL Trigger: CAGTAGGTGCAAACTCAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGTATGGGCTGGATCCCATGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |
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CDS CAA 72 bp | AAATGGCCAAGTACTCATCCCTCAGTAGACACTGTCTaGCTAGCTCCATCAGAGTGGGTGGCGAATAGAAAT | + |
Preference number: 6 (lower is better) Translates to: KWPSTHPSVDTV*LAPSEWVANRN Trigger: ATTTCTATTCGCCACCCACTCTGATGGAGCTAGCAAGACAGTGTCTACTGAGGGATGAGTACTTGGCCATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |
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CDS GCA 72 bp | CATGGCAGTCAAGATCTTTGTATGTCCATCAATAAATaGCTCCTTAAACATCACTGGGAACATCATATTGGG | + |
Preference number: 6 (lower is better) Translates to: HGSQDLCMSINK*LLKHHWEHHIG Trigger: CCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACATACAAAGATCTTGACTGCCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |
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CDS CAA 72 bp | TCTATCTCCTCAAGAACAGCCTTCAAAGTGTCTAAGTaGAGGTTCTTTAGCATCGTTCCTACAGAAAGGTAT | + |
Preference number: 6 (lower is better) Translates to: SISSRTAFKVSK*RFFSIVPTERY Trigger: ATACCTTTCTGTAGGAACGATGCTAAAGAACCTCAACTTAGACACTTTGAAGGCTGTTCTTGAGGAGATAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080405.2 ENSMUST00000143978.2 |