RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OOG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066030

Ensembl transcript IDs: ENSMUST00000080405.2, ENSMUST00000143978.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGACAATTATTTCTTTTCAATGTGTCTCAGAAAATTAGGTGGTTaGCACATCTATGTTCCTTCCAGCAAGGGACATTCACTTAGGATA +
Preference number: 1 (lower is better)
Translates to: EDNYFFSMCLRKLGG*HIYVPSSKGHSLRI
Trigger: TATCCTAAGTGAATGTCCCTTGCTGGAAGGAACATAGATGTGTCAACCACCTAATTTTCTGAGACACATTGAAAAGAAATAATTGTCCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR CAA 90 bp GCTCTGATTGAGACATACCAGCACCCCAGAAAGTCAACACATTTATaGTATGCAGTCAACAGATGGGAACAACATTTTCATGCAAGGATG +
Preference number: 2 (lower is better)
Translates to: ALIETYQHPRKSTHL*YAVNRWEQHFHARM
Trigger: CATCCTTGCATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTCAATCAGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR-3UTR GCA 90 bp GCTCTGATTGAGACATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAAACATCTTTTGTAGATaGAATACTCTTCACCAGCTC +
Preference number: 2 (lower is better)
Translates to: ALIETYQHPRKSTHLLYANIFCR*NTLHQL
Trigger: GAGCTGGTGAAGAGTATTGCATCTACAAAAGATGTT...TGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTCAATCAGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR-3UTR CCA 90 bp CACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACAACATTCTCAGAAAATTAGGTaGTTGACACATCTATGTTCC +
Preference number: 2 (lower is better)
Translates to: HPRKSTHLLYAVNRWEQHSQKIR*LTHLCS
Trigger: GGAACATAGATGTGTCAACCACCTAATTTTCTGAGA...ATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR CCA 72 bp AGAAAGTCAACACATTTATTGTATGCAGTCAACAGATaGGAACAACATTTTCATGCAAGGATGCCTGTATTG +
Preference number: 3 (lower is better)
Translates to: RKSTHLLYAVNR*EQHFHARMPVL
Trigger: CAATACAGGCATCCTTGCATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR TCA 72 bp AACATCTTTTGTAGATGCAATACTCTTCACCAGCTCTaGGGACAATTATTTCTTTTCAATGTGTCTCAGAAA +
Preference number: 3 (lower is better)
Translates to: NIFCRCNTLHQL*GQLFLFNVSQK
Trigger: TTTCTGAGACACATTGAAAAGAAATAATTGTCCTCAGAGCTGGTGAAGAGTATTGCATCTACAAAAGATGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS-3UTR CCA 90 bp ATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAAAGCCTTCAACTTCATaGGATCCAGCCCATACCACA +
Preference number: 4 (lower is better)
Translates to: IPAPQKVNTFIVCSQQMGKPSTS*DPAHTT
Trigger: TGTGGTATGGGCTGGATCCCATGAAGTTGAAGGCTT...TCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS-3UTR TCA 90 bp ACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACTCAAAGTGTCTAAGTTaGGGTTCTTTAGCATCGTTC +
Preference number: 4 (lower is better)
Translates to: TSTPESQHIYCMQSTDGNSKCLS*GSLASF
Trigger: GAACGATGCTAAAGAACCTCAACTTAGACACTTTGA...GTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
3UTR CAA 72 bp GAGACATACCAGCACCCCAGAAAGTCAACACATTTATaGTATGCAGTCAACAGATGGGAACAACATTTTCAT +
Preference number: 4 (lower is better)
Translates to: ETYQHPRKSTHL*YAVNRWEQHFH
Trigger: ATGAAAATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTATGTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS-3UTR CAA 90 bp ACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGAACAACATTTCAGTAGACACTGTCTaGCTAGCTCCATCAGAGTGG +
Preference number: 5 (lower is better)
Translates to: TPESQHIYCMQSTDGNNISVDTV*LAPSEW
Trigger: CCACTCTGATGGAGCTAGCAAGACAGTGTCTACTGA...AATGTTGTTCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS GCA 90 bp CACAGGTATCATGGCAGTCAAGATCTTTGTATGTCCATCAATAAATaGCTCCTTAAACATCACTGGGAACATCATATTGGGCAGGTCCTT +
Preference number: 5 (lower is better)
Translates to: HRYHGSQDLCMSINK*LLKHHWEHHIGQVL
Trigger: AAGGACCTGCCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACATACAAAGATCTTGACTGCCATGATACCTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2
CDS-3UTR CAA 90 bp ATACCAGCACCCCAGAAAGTCAACACATTTATTGTATGCAGTCAACAGATGGGATTCAAAGTGTCTAAGTaGAGGTTCTTTAGCATCGTT +
Preference number: 5 (lower is better)
Translates to: IPAPQKVNTFIVCSQQMGFKVSK*RFFSIV
Trigger: AACGATGCTAAAGAACCTCAACTTAGACACTTTGAA...TCCCATCTGTTGACTGCATACAATAAATGTGTTGACTTTCTGGGGTGCTGGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS-3UTR CAA 90 bp CTCTTCACCAGCTCTGAGGACAATTATTTCTTTTCAATGTGTCTCAGAAAATTATCTGCATGTACAATTTaGAACATTTCTATGACTGCG +
Preference number: 5 (lower is better)
Translates to: LFTSSEDNYFFSMCLRKLSACTI*NISMTA
Trigger: CGCAGTCATAGAAATGTTCAAAATTGTACATGCAGA...TAATTTTCTGAGACACATTGAAAAGAAATAATTGTCCTCAGAGCTGGTGAAGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080405.2
CDS TCA 72 bp AGCCAGGACTATTCTCAACTGGCTTCTCCTGTTCCATaGACTCTGGTAAGCCTTCAACTTCATGGGATCCAG +
Preference number: 6 (lower is better)
Translates to: SQDYSQLASPVP*TLVSLQLHGIQ
Trigger: CTGGATCCCATGAAGTTGAAGGCTTACCAGAGTTCATGGAACAGGAGAAGCCAGTTGAGAATAGTCCTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2
CDS CCA 72 bp ACTTCATGGGATCCAGCCCATACCACAACCAAATCATaGCTCAAAGTGATCTCTCTGAGTTTGCACCTACTG +
Preference number: 6 (lower is better)
Translates to: TSWDPAHTTTKS*LKVISLSLHLL
Trigger: CAGTAGGTGCAAACTCAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGTATGGGCTGGATCCCATGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2
CDS CAA 72 bp AAATGGCCAAGTACTCATCCCTCAGTAGACACTGTCTaGCTAGCTCCATCAGAGTGGGTGGCGAATAGAAAT +
Preference number: 6 (lower is better)
Translates to: KWPSTHPSVDTV*LAPSEWVANRN
Trigger: ATTTCTATTCGCCACCCACTCTGATGGAGCTAGCAAGACAGTGTCTACTGAGGGATGAGTACTTGGCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2
CDS GCA 72 bp CATGGCAGTCAAGATCTTTGTATGTCCATCAATAAATaGCTCCTTAAACATCACTGGGAACATCATATTGGG +
Preference number: 6 (lower is better)
Translates to: HGSQDLCMSINK*LLKHHWEHHIG
Trigger: CCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACATACAAAGATCTTGACTGCCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2
CDS CAA 72 bp TCTATCTCCTCAAGAACAGCCTTCAAAGTGTCTAAGTaGAGGTTCTTTAGCATCGTTCCTACAGAAAGGTAT +
Preference number: 6 (lower is better)
Translates to: SISSRTAFKVSK*RFFSIVPTERY
Trigger: ATACCTTTCTGTAGGAACGATGCTAAAGAACCTCAACTTAGACACTTTGAAGGCTGTTCTTGAGGAGATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080405.2
ENSMUST00000143978.2