Pregenerated sensors for OOEP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032346Ensembl transcript IDs: ENSMUST00000034900.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTaGGTTCACGGGCAGCCAGGGCTGCACAGAGAAACCCTGTCTCGA | + |
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Preference number: 1 (lower is better) Translates to: EAGGFLSSRPVWSTK*VHGQPGLHRETLSR Trigger: TCGAGACAGGGTTTCTCTGTGCAGCCCTGGCTGCCCGTGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 90 bp | CTGGCTGGCCTTAAATTCAAGAGATCCACCTGCCTCTGCCTCAGGTaGTGGGATCAAAGGCATTGCACCACCACTGCCCAGCTCCCAAGT | + |
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Preference number: 1 (lower is better) Translates to: LAGLKFKRSTCLCLR*WDQRHCTTTAQLPS Trigger: ACTTGGGAGCTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 90 bp | TCCAGAATTCTGGCTGGCCTTAAATTCAAGAGATCCACCTGCCTCTaGCTCAGGTGCTGGGATCAAAGGCATTGCACCACCACTGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: SRILAGLKFKRSTCL*LRCWDQRHCTTTAQ Trigger: CTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAGAATTCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 90 bp | AAGAGATCCACCTGCCTCTGCCTCAGGTGCTGGGATCAAAGGCATTaGACCACCACTGCCCAGCTCCCAAGTGAATTCTTGCACACTATA | + |
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Preference number: 1 (lower is better) Translates to: KRSTCLCLRCWDQRH*TTTAQLPSEFLHTI Trigger: TATAGTGTGCAAGAATTCACTTGGGAGCTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CCA 90 bp | AAAAGGGTAGCCAGAAATGGTGGAGCACACCTTTATCACAGAACTTaGGAGGCAGAAGCAGGTAGATCGGAGTTCAAGGCCAGCCTGGTC | + |
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Preference number: 1 (lower is better) Translates to: KRVARNGGAHLYHRT*EAEAGRSEFKASLV Trigger: GACCAGGCTGGCCTTGAACTCCGATCTACCTGCTTCTGCCTCCCAAGTTCTGTGATAAAGGTGTGCTCCACCATTTCTGGCTACCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CCA 90 bp | TCTCCTGTCCAACCCCATTCCTGGTACAAGGATTCTCCAGAATTCTaGCTGGCCTTAAATTCAAGAGATCCACCTGCCTCTGCCTCAGGT | + |
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Preference number: 1 (lower is better) Translates to: SPVQPHSWYKDSPEF*LALNSRDPPASASG Trigger: ACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAGAATTCTGGAGAATCCTTGTACCAGGAATGGGGTTGGACAGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 90 bp | AACAGGAAGCATAGTAACAGCTTAGCAACCTTGAGCAGAAATGATTaGCCCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCA | + |
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Preference number: 1 (lower is better) Translates to: NRKHSNSLATLSRND*PKVMFQHPEHVRAA Trigger: TGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGGGGCAATCATTTCTGCTCAAGGTTGCTAAGCTGTTACTATGCTTCCTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CCA 90 bp | ACCACTGCCCAGCTCCCAAGTGAATTCTTGCACACTATAAATCAATaGTTCCCAATCTTTCTAATGCTTAGGCCCTTTAATACATTTCGC | + |
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Preference number: 1 (lower is better) Translates to: TTAQLPSEFLHTINQ*FPIFLMLRPFNTFR Trigger: GCGAAATGTATTAAAGGGCCTAAGCATTAGAAAGATTGGGAACCATTGATTTATAGTGTGCAAGAATTCACTTGGGAGCTGGGCAGTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR TCA 90 bp | CTACTTCATAACTCGACCACTCTTCTGAATTGTAATGTAAATATCTaGTATACAGGATTATATTCTGATCCCAGGTTGAGACTACTGCCT | + |
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Preference number: 1 (lower is better) Translates to: LLHNSTTLLNCNVNI*YTGLYSDPRLRLLP Trigger: AGGCAGTAGTCTCAACCTGGGATCAGAATATAATCCTGTATATCAGATATTTACATTACAATTCAGAAGAGTGGTCGAGTTATGAAGTAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR GCA 90 bp | TCCACCTGCCTCTGCCTCAGGTGCTGGGATCAAAGGCATTGCACCACCACTGCCACGGGCAGCCAGGGCTaGACAGAGAAACCCTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: STCLCLRCWDQRHCTTTATGSQG*TEKPCL Trigger: GAGACAGGGTTTCTCTGTGCAGCCCTGGCTGCCCGT...GGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR TCA 90 bp | TCCACCTGCCTCTGCCTCAGGTGCTGGGATCAAAGGCATTGCACCACCACTGCCAAAGGGATCAAGAGCTaGCATTTTAATGATGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: STCLCLRCWDQRHCTTTAKGIKS*HFNDAL Trigger: AAGGGCATCATTAAAATGTCAGCTCTTGATCCCTTT...GGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR TCA 90 bp | ATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCTCTCACGGGGAATCACTGAGGCAGGCGGATTTCTaGGTTCGAGGCCAGTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: ILSMLELQINVSSHGESLRQADF*VRGQSG Trigger: ACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCCT...CAGTGATTCCCCGTGAGAGGATACATTAATTTGCAGCTCTAACATGCTCAGGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCGAGGCCCTTCCAAAGTaGATTCTCCTGTCCAACCCC | + |
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Preference number: 2 (lower is better) Translates to: PKSCFSILSMLELQINVSEALPK*ILLSNP Trigger: GGGGTTGGACAGGAGAATTCACTTTGGAAGGGCCTC...GGATACATTAATTTGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CAA 90 bp | GATCAAAGGCATTGCACCACCACTGCCCAGCTCCCAAGTGAATTCTaGCACACTATAAATCAATGGTTCCCAATCTTTCTAATGCTTAGG | + |
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Preference number: 2 (lower is better) Translates to: DQRHCTTTAQLPSEF*HTINQWFPIFLMLR Trigger: CCTAAGCATTAGAAAGATTGGGAACCATTGATTTATAGTGTGCAAGAATTCACTTGGGAGCTGGGCAGTGGTGGTGCAATGCCTTTGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAATGATTGCCCCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCACTTTATCACAGAACTTaGGAGGCAGAAGCAGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: RNDCPKVMFQHPEHVRAALYHRT*EAEAGR Trigger: TCTACCTGCTTCTGCCTCCCAAGTTCTGTGATAAAG...TGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGGGGCAATCATTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAATGATTGCCCCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAGACTACTGCCTTAACTaGAGTAGGTTAAAAAGTACA | + |
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Preference number: 2 (lower is better) Translates to: RNDCPKVMFQHPEHVRAADYCLN*SRLKST Trigger: TGTACTTTTTAACCTACTCCAGTTAAGGCAGTAGTC...TGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGGGGCAATCATTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 72 bp | ACCTGCCTCTGCCTCAGGTGCTGGGATCAAAGGCATTaGACCACCACTGCCCAGCTCCCAAGTGAATTCTTG | + |
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Preference number: 3 (lower is better) Translates to: TCLCLRCWDQRH*TTTAQLPSEFL Trigger: CAAGAATTCACTTGGGAGCTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 72 bp | CTGGCTGGCCTTAAATTCAAGAGATCCACCTGCCTCTaGCTCAGGTGCTGGGATCAAAGGCATTGCACCACC | + |
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Preference number: 3 (lower is better) Translates to: LAGLKFKRSTCL*LRCWDQRHCTT Trigger: GGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 72 bp | CTTAAATTCAAGAGATCCACCTGCCTCTGCCTCAGGTaGTGGGATCAAAGGCATTGCACCACCACTGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: LKFKRSTCLCLR*WDQRHCTTTAQ Trigger: CTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR CAA 90 bp | GGCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTGAGTTCACGGTCAACTGTGCCATTCTaGAGGGCCAGACTGAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: GRRISEFEASLVYKVSSRSTVPF*RARLKC Trigger: ACACTTCAGTCTGGCCCTCAAGAATGGCACAGTTGA...CCGTGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAAATCCGCCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CCA 72 bp | GCCAGAAATGGTGGAGCACACCTTTATCACAGAACTTaGGAGGCAGAAGCAGGTAGATCGGAGTTCAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: ARNGGAHLYHRT*EAEAGRSEFKA Trigger: GGCCTTGAACTCCGATCTACCTGCTTCTGCCTCCCAAGTTCTGTGATAAAGGTGTGCTCCACCATTTCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR GCA 72 bp | AGAATTCTGGCTGGCCTTAAATTCAAGAGATCCACCTaGCTCTGCCTCAGGTGCTGGGATCAAAGGCATTGC | + |
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Preference number: 3 (lower is better) Translates to: RILAGLKFKRST*LCLRCWDQRHC Trigger: GCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAGAATTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CCA 72 bp | CAACCCCATTCCTGGTACAAGGATTCTCCAGAATTCTaGCTGGCCTTAAATTCAAGAGATCCACCTGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: QPHSWYKDSPEF*LALNSRDPPAS Trigger: AGAGGCAGGTGGATCTCTTGAATTTAAGGCCAGCCAGAATTCTGGAGAATCCTTGTACCAGGAATGGGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR CAA 90 bp | CCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCCTGGGATCAAAGGCATaGCACCACCACTGCCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: PKSCFSILSMLELQINVSLGSKA*HHHCPA Trigger: AGCTGGGCAGTGGTGGTGCAATGCCTTTGATCCCAG...GGATACATTAATTTGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR-3UTR CAA 90 bp | CCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCCAATCGTACATTTCTTaGCTACTTCATAACTCGACC | + |
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Preference number: 3 (lower is better) Translates to: PKSCFSILSMLELQINVSQSYIS*LLHNST Trigger: GGTCGAGTTATGAAGTAGCAAAGAAATGTACGATTG...GGATACATTAATTTGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR TCA 72 bp | ATATCTGATATACAGGATTATATTCTGATCCCAGGTTaGGACTACTGCCTTAACTGGAGTAGGTTAAAAAGT | + |
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Preference number: 3 (lower is better) Translates to: ISDIQDYILIPG*DYCLNWSRLKS Trigger: ACTTTTTAACCTACTCCAGTTAAGGCAGTAGTCTCAACCTGGGATCAGAATATAATCCTGTATATCAGATAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR GCA 90 bp | TCCACCTGCCTCTGCCTCAGGTGCTGGGATCAAAGGCATTGCACCACCACTGCCACCACCAGGGCCGAGTaGGAAGTCTCAGGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: STCLCLRCWDQRHCTTTATTRAE*EVSGTQ Trigger: CTGTGTCCCTGAGACTTCGCACTCGGCCCTGGTGGT...GGCAGTGGTGGTGCAATGCCTTTGATCCCAGCACCTGAGGCAGAGGCAGGTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR TCA 90 bp | GTCAACTGTGCCATTCTTGAGGGCCAGACTGAAGTGTTGTTAGAAACCGTAGGACTTGGTCTGTGCCTATaGCCCTTTCTGCCACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VNCAILEGQTEVLLETVGLGLCL*PFLPPR Trigger: CCTGGGTGGCAGAAAGGGTCATAGGCACAGACCAAG...TCCTACGGTTTCTAACAACACTTCAGTCTGGCCCTCAAGAATGGCACAGTTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR CCA 90 bp | CAAAGTGAATTCTCCTGTCCAACCCCATTCCTGGTACAAGGATTCTCCAGAATTAGTCAGAGTCTGGCTTaGCGTCAGCATCAGCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: QSEFSCPTPFLVQGFSRISQSLA*RQHQPC Trigger: ACACGGCTGATGCTGACGCCAAGCCAGACTCTGACT...AATTCTGGAGAATCCTTGTACCAGGAATGGGGTTGGACAGGAGAATTCACTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR TCA 90 bp | CAAAGTGAATTCTCCTGTCCAACCCCATTCCTGGTACAAGGATTCTCCAGAATTGGATTACTGACTTCCTaGATTGGGAACCACCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QSEFSCPTPFLVQGFSRIGLLTS*IGNHQG Trigger: GCCCTGGTGGTTCCCAATTCAGGAAGTCAGTAATCC...AATTCTGGAGAATCCTTGTACCAGGAATGGGGTTGGACAGGAGAATTCACTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR TCA 90 bp | AGAAATGATTGCCCCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAACGTTAAGCAGCTTCTaGGAGTCAGAGTCTGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RNDCPKVMFQHPEHVRAATLSSF*ESESGL Trigger: CAAGCCAGACTCTGACTCTCAGAAGCTGCTTAACGT...TGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGGGGCAATCATTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR CCA 90 bp | ACCTTGAGCAGAAATGATTGCCCCAAAGTCATGTTTCAGCATCCTGAGCATGTTTCTGAGATTTCCGCTTaGTCTGTGCCTATGACCCTT | + |
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Preference number: 4 (lower is better) Translates to: TLSRNDCPKVMFQHPEHVSEISA*SVPMTL Trigger: AAGGGTCATAGGCACAGACCAAGCGGAAATCTCAGA...AACATGCTCAGGATGCTGAAACATGACTTTGGGGCAATCATTTCTGCTCAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CAA 72 bp | GTCAACTGTGCCATTCTTGAGGGCCAGACTGAAGTGTaGTTAGAAACCGTAGGAATACAACCTACATACTCC | + |
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Preference number: 4 (lower is better) Translates to: VNCAILEGQTEV*LETVGIQPTYS Trigger: GGAGTATGTAGGTTGTATTCCTACGGTTTCTAACAACACTTCAGTCTGGCCCTCAAGAATGGCACAGTTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR TCA 90 bp | CCAAAGTCATGTTTCAGCATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCGCACCAGAGGATTACTaGCTTCCTGAATTGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: PKSCFSILSMLELQINVSAPEDY*LPELGT Trigger: GGTTCCCAATTCAGGAAGTCAGTAATCCTCTGGTGC...GGATACATTAATTTGCAGCTCTAACATGCTCAGGATGCTGAAACATGACTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CAA 72 bp | CATTGCACCACCACTGCCCAGCTCCCAAGTGAATTCTaGCACACTATAAATCAATGGTTCCCAATCTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: HCTTTAQLPSEF*HTINQWFPIFL Trigger: TAGAAAGATTGGGAACCATTGATTTATAGTGTGCAAGAATTCACTTGGGAGCTGGGCAGTGGTGGTGCAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CAA 72 bp | CCAGGTAACAGGAAGCATAGTAACAGCTTAGCAACCTaGAGCAGAAATGATTGCCCCAAAGTCATGTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PGNRKHSNSLAT*SRNDCPKVMFQ Trigger: CTGAAACATGACTTTGGGGCAATCATTTCTGCTCAAGGTTGCTAAGCTGTTACTATGCTTCCTGTTACCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR GCA 90 bp | CTCCCAAGTGAATTCTTGCACACTATAAATCAATGGTTCCCAATCTTTCTAATGCTTTCTTACTTAACTTaGTTAGGATTGAGGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LPSEFLHTINQWFPIFLMLSYLT*LGLRRH Trigger: GTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAG...CATTAGAAAGATTGGGAACCATTGATTTATAGTGTGCAAGAATTCACTTGGGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| 3UTR CAA 72 bp | ATTTCGCGTTGTGTTGATTTCCAATCGTACATTTCTTaGCTACTTCATAACTCGACCACTCTTCTGAATTGT | + |
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Preference number: 4 (lower is better) Translates to: ISRCVDFQSYIS*LLHNSTTLLNC Trigger: ACAATTCAGAAGAGTGGTCGAGTTATGAAGTAGCAAAGAAATGTACGATTGGAAATCAACACAACGCGAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS TCA 90 bp | CGAGTGCGAAGTCTCAGGGACACAGGCAGGACGTTAAGCAGCTTCTaGGAGTCAGAGTCTGGCTTGGCGTCAGCATCAGCCGTGTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: RVRSLRDTGRTLSSF*ESESGLASASAVWD Trigger: ATCCCACACGGCTGATGCTGACGCCAAGCCAGACTCTGACTCTCAGAAGCTGCTTAACGTCCTGCCTGTGTCCCTGAGACTTCGCACTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CCA 90 bp | CCAGGCTTCCATGTAGAGCACCAGAGGATTACTGACTTCCTGAATTaGGAACCACCAGGGCCGAGTGCGAAGTCTCAGGGACACAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: PGFHVEHQRITDFLN*EPPGPSAKSQGHRQ Trigger: CTGCCTGTGTCCCTGAGACTTCGCACTCGGCCCTGGTGGTTCCCAATTCAGGAAGTCAGTAATCCTCTGGTGCTCTACATGGAAGCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS TCA 90 bp | CCCTTTCTGCCACCCAGGCTTCCATGTAGAGCACCAGAGGATTACTaGCTTCCTGAATTGGGAACCACCAGGGCCGAGTGCGAAGTCTCA | + |
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Preference number: 5 (lower is better) Translates to: PFLPPRLPCRAPEDY*LPELGTTRAECEVS Trigger: TGAGACTTCGCACTCGGCCCTGGTGGTTCCCAATTCAGGAAGTCAGTAATCCTCTGGTGCTCTACATGGAAGCCTGGGTGGCAGAAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS GCA 90 bp | GCGGAAGCGGAAAGCCAGCCAGTTTTAGCCCTTTCTTACTTAACTTaGTTAGGATTGAGGAGGCACGAATTTTCAAGAACTCTTCAACTT | + |
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Preference number: 5 (lower is better) Translates to: AEAESQPVLALSYLT*LGLRRHEFSRTLQL Trigger: AAGTTGAAGAGTTCTTGAAAATTCGTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGGGCTAAAACTGGCTGGCTTTCCGCTTCCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS-3UTR CAA 90 bp | ATCCTGAGCATGTTAGAGCTGCAAATTAATGTATCCTCTCACGGGGAATCACTGCCTTTCTTACTTAACTaGCTTAGGATTGAGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: ILSMLELQINVSSHGESLPFLLN*LRIEEA Trigger: TGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGG...CAGTGATTCCCCGTGAGAGGATACATTAATTTGCAGCTCTAACATGCTCAGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CCA 90 bp | CGAATTTTCAAGAACTCTTCAACTTCTTTCACCTTCACAGCTCTTTaGAGTTCGTTTTCTTTGTGCCAGGCCGCCATGTTCAAGAGAATA | + |
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Preference number: 5 (lower is better) Translates to: RIFKNSSTSFTFTAL*SSFSLCQAAMFKRI Trigger: TATTCTCTTGAACATGGCGGCCTGGCACAAAGAAAACGAACTCCAAAGAGCTGTGAAGGTGAAAGAAGTTGAAGAGTTCTTGAAAATTCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS TCA 72 bp | AGTCTCAGGGACACAGGCAGGACGTTAAGCAGCTTCTaGGAGTCAGAGTCTGGCTTGGCGTCAGCATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SLRDTGRTLSSF*ESESGLASASA Trigger: GGCTGATGCTGACGCCAAGCCAGACTCTGACTCTCAGAAGCTGCTTAACGTCCTGCCTGTGTCCCTGAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS TCA 72 bp | CCACCCAGGCTTCCATGTAGAGCACCAGAGGATTACTaGCTTCCTGAATTGGGAACCACCAGGGCCGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: PPRLPCRAPEDY*LPELGTTRAEC Trigger: GCACTCGGCCCTGGTGGTTCCCAATTCAGGAAGTCAGTAATCCTCTGGTGCTCTACATGGAAGCCTGGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CCA 72 bp | CATGTAGAGCACCAGAGGATTACTGACTTCCTGAATTaGGAACCACCAGGGCCGAGTGCGAAGTCTCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: HVEHQRITDFLN*EPPGPSAKSQG Trigger: TCCCTGAGACTTCGCACTCGGCCCTGGTGGTTCCCAATTCAGGAAGTCAGTAATCCTCTGGTGCTCTACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CCA 72 bp | GCTTGGCACATCCACTCTATTTCTGAGATTTCCGCTTaGTCTGTGCCTATGACCCTTTCTGCCACCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: AWHIHSISEISA*SVPMTLSATQA Trigger: AGCCTGGGTGGCAGAAAGGGTCATAGGCACAGACCAAGCGGAAATCTCAGAAATAGAGTGGATGTGCCAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CCA 72 bp | AAGAACTCTTCAACTTCTTTCACCTTCACAGCTCTTTaGAGTTCGTTTTCTTTGTGCCAGGCCGCCATGTTC | + |
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Preference number: 6 (lower is better) Translates to: KNSSTSFTFTAL*SSFSLCQAAMF Trigger: GAACATGGCGGCCTGGCACAAAGAAAACGAACTCCAAAGAGCTGTGAAGGTGAAAGAAGTTGAAGAGTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CAA 90 bp | AGCGGAAGCGGAAAGCCAGCCAGTTTTAGCCCTTTCTTACTTAACTaGCTTAGGATTGAGGAGGCACGAATTTTCAAGAACTCTTCAACT | + |
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Preference number: 6 (lower is better) Translates to: SGSGKPASFSPFLLN*LRIEEARIFKNSST Trigger: AGTTGAAGAGTTCTTGAAAATTCGTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGGGCTAAAACTGGCTGGCTTTCCGCTTCCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CAA 72 bp | GGAAAGCCAGCCAGTTTTAGCCCTTTCTTACTTAACTaGCTTAGGATTGAGGAGGCACGAATTTTCAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: GKPASFSPFLLN*LRIEEARIFKN Trigger: GTTCTTGAAAATTCGTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGGGCTAAAACTGGCTGGCTTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CAA 90 bp | ACGAATTTTCAAGAACTCTTCAACTTCTTTCACCTTCACAGCTCTTaGGAGTTCGTTTTCTTTGTGCCAGGCCGCCATGTTCAAGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: TNFQELFNFFHLHSS*EFVFFVPGRHVQEN Trigger: ATTCTCTTGAACATGGCGGCCTGGCACAAAGAAAACGAACTCCAAAGAGCTGTGAAGGTGAAAGAAGTTGAAGAGTTCTTGAAAATTCGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS GCA 72 bp | GAAAGCCAGCCAGTTTTAGCCCTTTCTTACTTAACTTaGTTAGGATTGAGGAGGCACGAATTTTCAAGAACT | + |
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Preference number: 6 (lower is better) Translates to: ESQPVLALSYLT*LGLRRHEFSRT Trigger: AGTTCTTGAAAATTCGTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGGGCTAAAACTGGCTGGCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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| CDS CAA 72 bp | CCAGTTTTAGCCCTTTCTTACTTAACTTGCTTAGGATaGAGGAGGCACGAATTTTCAAGAACTCTTCAACTT | + |
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Preference number: 6 (lower is better) Translates to: PVLALSYLTCLG*RRHEFSRTLQL Trigger: AAGTTGAAGAGTTCTTGAAAATTCGTGCCTCCTCAATCCTAAGCAAGTTAAGTAAGAAAGGGCTAAAACTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034900.8 |
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