RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ONECUT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045991

Ensembl transcript IDs: ENSMUST00000175965.10

Found 331 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATCTCCCAGAGTTCTGTGGGCCCTCTTTCACTTGCTATGGGAAGGTaGCCAACCAGGGCTGGCGTGGCGAAGTCACTGCCCGGATATTTG +
Preference number: 1 (lower is better)
Translates to: ISQSSVGPLSLAMGR*PTRAGVAKSLPGYL
Trigger: CAAATATCCGGGCAGTGACTTCGCCACGCCAGCCCTGGTTGGTCACCTTCCCATAGCAAGTGAAAGAGGGCCCACAGAACTCTGGGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp AGTGACCTTTGTAATCTCCCAGAGTTCTGTGGGCCCTCTTTCACTTaGTATGGGAAGGTGACCAACCAGGGCTGGCGTGGCGAAGTCACT +
Preference number: 1 (lower is better)
Translates to: SDLCNLPEFCGPSFT*YGKVTNQGWRGEVT
Trigger: AGTGACTTCGCCACGCCAGCCCTGGTTGGTCACCTTCCCATAGCAAGTGAAAGAGGGCCCACAGAACTCTGGGAGATTACAAAGGTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp CTCTCAGCTCTAGATATGATGTGCCCACCACAGAACTGCCCACATTaGGTGAATAAAGAGGCAAGGCAGAGGATGCGGCTCTCCAGGGAC +
Preference number: 1 (lower is better)
Translates to: LSALDMMCPPQNCPH*VNKEARQRMRLSRD
Trigger: GTCCCTGGAGAGCCGCATCCTCTGCCTTGCCTCTTTATTCACCCAATGTGGGCAGTTCTGTGGTGGGCACATCATATCTAGAGCTGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp CAGGTTAGCAGCCGCCTTCGTCCGCACACATCGTTGTTGTTTCTTTaGGGGAGTCTGAGCTGTGGCTGTCCATACCATACGTCAGAAAGA +
Preference number: 1 (lower is better)
Translates to: QVSSRLRPHTSLLFL*GSLSCGCPYHTSER
Trigger: TCTTTCTGACGTATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGCTGCTAACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp CATTCAGATAACTACTCCAACCTGGGCCCCAGTGGGGTGACTGTATaGGTCCTAGGGTCCCTTCCAGCTCTCCTACCCAATTCTTATTCC +
Preference number: 1 (lower is better)
Translates to: HSDNYSNLGPSGVTV*VLGSLPALLPNSYS
Trigger: GGAATAAGAATTGGGTAGGAGAGCTGGAAGGGACCCTAGGACCCATACAGTCACCCCACTGGGGCCCAGGTTGGAGTAGTTATCTGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp GCCCCGAAAATCCGGGCTGATGACGTTGGATCTCAGCTTGAGTTCTaGAGCAGGTTCAGGCTGATCAGTCACTGCTTGTCCACAAATCTG +
Preference number: 1 (lower is better)
Translates to: APKIRADDVGSQLEF*SRFRLISHCLSTNL
Trigger: CAGATTTGTGGACAAGCAGTGACTGATCAGCCTGAACCTGCTTCAGAACTCAAGCTGAGATCCAACGTCATCAGCCCGGATTTTCGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp GCCGCCTTCGTCCGCACACATCGTTGTTGTTTCTTTGGGGGAGTCTaGGCTGTGGCTGTCCATACCATACGTCAGAAAGAAGAGCTCAAA +
Preference number: 1 (lower is better)
Translates to: AAFVRTHRCCFFGGV*AVAVHTIRQKEELK
Trigger: TTTGAGCTCTTCTTTCTGACGTATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp ATAAAGAGGCAAGGCAGAGGATGCGGCTCTCCAGGGACAGGAATCTaGAACTCTCCTCACAGTCTACTGAATGCCTTTTCTCCAGGACTG +
Preference number: 1 (lower is better)
Translates to: IKRQGRGCGSPGTGI*NSPHSLLNAFSPGL
Trigger: CAGTCCTGGAGAAAAGGCATTCAGTAGACTGTGAGGAGAGTTCCAGATTCCTGTCCCTGGAGAGCCGCATCCTCTGCCTTGCCTCTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp CCGATCGACCCCAGTGCCAGCTATGGTTGCACTCAAGCTTGTCAGTaGAAACTGGTAATTACTACCTCGAGGAGACCTGATCGACCTATT +
Preference number: 1 (lower is better)
Translates to: PIDPSASYGCTQACQ*KLVITTSRRPDRPI
Trigger: AATAGGTCGATCAGGTCTCCTCGAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp TACCTCCCTTCAACAATCCCGATCGACCCCAGTGCCAGCTATGGTTaGACTCAAGCTTGTCAGTGCAAACTGGTAATTACTACCTCGAGG +
Preference number: 1 (lower is better)
Translates to: YLPSTIPIDPSASYG*TQACQCKLVITTSR
Trigger: CCTCGAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGAAGGGAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp TCATCGAAGCTTTTGGCTTGCTCCGAACACCCCTTGGTGCCCACCTaGGGCCATTCACTGGTAAATATGCACATAGTGACCTTTGTAATC +
Preference number: 1 (lower is better)
Translates to: SSKLLACSEHPLVPT*GHSLVNMHIVTFVI
Trigger: GATTACAAAGGTCACTATGTGCATATTTACCAGTGAATGGCCCCAGGTGGGCACCAAGGGGTGTTCGGAGCAAGCCAAAAGCTTCGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp GAGATACCTCCCTTCAACAATCCCGATCGACCCCAGTGCCAGCTATaGTTGCACTCAAGCTTGTCAGTGCAAACTGGTAATTACTACCTC +
Preference number: 1 (lower is better)
Translates to: EIPPFNNPDRPQCQL*LHSSLSVQTGNYYL
Trigger: GAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGAAGGGAGGTATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp TTCCAGCTCTCCTACCCAATTCTTATTCCTGTAGTTGCAGTAGCTTaGGACACTTTTCCCTGTGATAGCTCCAGGACACAGAGTGGGGTG +
Preference number: 1 (lower is better)
Translates to: FQLSYPILIPVVAVA*DTFPCDSSRTQSGV
Trigger: CACCCCACTCTGTGTCCTGGAGCTATCACAGGGAAAAGTGTCCCAAGCTACTGCAACTACAGGAATAAGAATTGGGTAGGAGAGCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp CTATTGATGCTTACAGCTGCACTGAACTTGGTTGACATTGTGCTGTaGTTAACTCACTCCAAGAAGGCCCCATTTGGGTCTCTGGGATGC +
Preference number: 1 (lower is better)
Translates to: LLMLTAALNLVDIVL*LTHSKKAPFGSLGC
Trigger: GCATCCCAGAGACCCAAATGGGGCCTTCTTGGAGTGAGTTAATCACAGCACAATGTCAACCAAGTTCAGTGCAGCTGTAAGCATCAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp GGCCTGAATAGGGCTATTGATGCTTACAGCTGCACTGAACTTGGTTaGCATTGTGCTGTGATTAACTCACTCCAAGAAGGCCCCATTTGG +
Preference number: 1 (lower is better)
Translates to: GLNRAIDAYSCTELG*HCAVINSLQEGPIW
Trigger: CCAAATGGGGCCTTCTTGGAGTGAGTTAATCACAGCACAATGTCAACCAAGTTCAGTGCAGCTGTAAGCATCAATAGCCCTATTCAGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp CTGATGACGTTGGATCTCAGCTTGAGTTCTGAAGCAGGTTCAGGCTaGTCAGTCACTGCTTGTCCACAAATCTGCTCTGTTGTTCTGACA +
Preference number: 1 (lower is better)
Translates to: LMTLDLSLSSEAGSG*SVTACPQICSVVLT
Trigger: TGTCAGAACAACAGAGCAGATTTGTGGACAAGCAGTGACTGATCAGCCTGAACCTGCTTCAGAACTCAAGCTGAGATCCAACGTCATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp AGGTGTGTGCATGATCTAGGTCTCCAGGCCAGCCCTAAATCTGGCTaGAAATCTATGACTAGGAGTTGGGTTTCCATTCAAGGCTTAGAG +
Preference number: 1 (lower is better)
Translates to: RCVHDLGLQASPKSG*KSMTRSWVSIQGLE
Trigger: CTCTAAGCCTTGAATGGAAACCCAACTCCTAGTCATAGATTTTCAGCCAGATTTAGGGCTGGCCTGGAGACCTAGATCATGCACACACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp CTAAGGGTTAAGCCACAGACATTCAAGCGACAATCGTATTTCCCATaGTCTGCTGAGGAGAGAAAGGGACACCTTTCAGTATCCCGACAT +
Preference number: 1 (lower is better)
Translates to: LRVKPQTFKRQSYFP*SAEERKGHLSVSRH
Trigger: ATGTCGGGATACTGAAAGGTGTCCCTTTCTCTCCTCAGCAGAGCATGGGAAATACGATTGTCGCTTGAATGTCTGTGGCTTAACCCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp CGGAGTCTTATCTTTCACTTCCCTGTGGCTGTTATGAGAGTAACTTaGGGTCAATGGGCACTTCAGGACCTGTGGACTTATAGCAAAACC +
Preference number: 1 (lower is better)
Translates to: RSLIFHFPVAVMRVT*GQWALQDLWTYSKT
Trigger: GGTTTTGCTATAAGTCCACAGGTCCTGAAGTGCCCATTGACCTCAAGTTACTCTCATAACAGCCACAGGGAAGTGAAAGATAAGACTCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp GGATGGGTCACTGATGTCAATGCTCTGTACATGTCTACTGGGAACTaGCAACAGAATCTAATTCCCAAGGGGAAACCCAGAAAAGTGAGG +
Preference number: 1 (lower is better)
Translates to: GWVTDVNALYMSTGN*QQNLIPKGKPRKVR
Trigger: CCTCACTTTTCTGGGTTTCCCCTTGGGAATTAGATTCTGTTGTCAGTTCCCAGTAGACATGTACAGAGCATTGACATCAGTGACCCATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 90 bp GGGCTAGGATGGCAAACTATTTCCAAGCAGTGTTCTCTACCAAATTaGAATGGGAACTTTAAAGATCCCAGTGACAGCAGCGTCCCAACT +
Preference number: 1 (lower is better)
Translates to: GLGWQTISKQCSLPN*NGNFKDPSDSSVPT
Trigger: AGTTGGGACGCTGCTGTCACTGGGATCTTTAAAGTTCCCATTCCAATTTGGTAGAGAACACTGCTTGGAAATAGTTTGCCATCCTAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp AGATTGAGGCTGGAAAATGTGGGCCCAGGTCTCTTTAAAGCTAGCTaGAAGATATGGAGATCTCTTCCTAGTGCCCCAAACCTACTTTCT +
Preference number: 1 (lower is better)
Translates to: RLRLENVGPGLFKAS*KIWRSLPSAPNLLS
Trigger: AGAAAGTAGGTTTGGGGCACTAGGAAGAGATCTCCATATCTTTCAGCTAGCTTTAAAGAGACCTGGGCCCACATTTTCCAGCCTCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp AAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTAAGAAACTaGTGCTGCGTCATATCAGCCCTTGGCTCCAAATTTCAGGAGCTC +
Preference number: 1 (lower is better)
Translates to: KTYCLKTGIESNLRN*CCVISALGSKFQEL
Trigger: GAGCTCCTGAAATTTGGAGCCAAGGGCTGATATGACGCAGCAGCAGTTTCTTAGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp CAAATATCCACTATGACTTGCAGGAAACTAGTGTTAGCAAGAGGTTaGCAGGGCCTGAATAGGGCTATTGATGCTTACAGCTGCACTGAA +
Preference number: 1 (lower is better)
Translates to: QISTMTCRKLVLARG*QGLNRAIDAYSCTE
Trigger: TTCAGTGCAGCTGTAAGCATCAATAGCCCTATTCAGGCCCTGTCAACCTCTTGCTAACACTAGTTTCCTGCAAGTCATAGTGGATATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp GGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCCTaGTGCTTGGTGAATTTATGTTCTCCCAGGTATTCTGGGAATTTT +
Preference number: 1 (lower is better)
Translates to: GRKARKGDVAYGELP*CLVNLCSPRYSGNF
Trigger: AAAATTCCCAGAATACCTGGGAGAACATAAATTCACCAAGCAGCAGGGTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp ACATATTGTCTGAAGACAGGGATAGAAAGCAACCTAAGAAACTGCTaGTGCGTCATATCAGCCCTTGGCTCCAAATTTCAGGAGCTCTTA +
Preference number: 1 (lower is better)
Translates to: TYCLKTGIESNLRNC*CVISALGSKFQELL
Trigger: TAAGAGCTCCTGAAATTTGGAGCCAAGGGCTGATATGACGCAGCAGCAGTTTCTTAGGTTGCTTTCTATCCCTGTCTTCAGACAATATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp TCTACCGGATCTGTAAGAGTCTTCTTTCTGGCTTTAGTGAGTAACTaGAACCCTTGCAGGAGTCAAGATGGAAGAAAGTCCTTGCGTAAA +
Preference number: 1 (lower is better)
Translates to: STGSVRVFFLALVSN*NPCRSQDGRKSLRK
Trigger: TTTACGCAAGGACTTTCTTCCATCTTGACTCCTGCAAGGGTTTCAGTTACTCACTAAAGCCAGAAAGAAGACTCTTACAGATCCGGTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp CATTTCCCAAGAAAACTGGTATTATCACTGTCTGAGGCCGAACTGTaGACATGTTCACAGTTTAATGTATACACAAGGGTTCACGACTGC +
Preference number: 1 (lower is better)
Translates to: HFPRKLVLSLSEAEL*TCSQFNVYTRVHDC
Trigger: GCAGTCGTGAACCCTTGTGTATACATTAAACTGTGAACATGTGCACAGTTCGGCCTCAGACAGTGATAATACCAGTTTTCTTGGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp ATAAGTTACAATAGAAAGGCTCTGAGGGCCCCGGTAATTAAGAGGTaGAATTCGCCTGGTACCAAGTGGGGCTGTGAACTTAAATTAAAT +
Preference number: 1 (lower is better)
Translates to: ISYNRKALRAPVIKR*NSPGTKWGCELKLN
Trigger: ATTTAATTTAAGTTCACAGCCCCACTTGGTACCAGGCGAATTTCACCTCTTAATTACCGGGGCCCTCAGAGCCTTTCTATTGTAACTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp TACGTCAGAAAGAAGAGCTCAAATCATAATAGAGCAGAAGCGAAATaGAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGT +
Preference number: 1 (lower is better)
Translates to: YVRKKSSNHNRAEAK*RPHRERNLWYLWCR
Trigger: ACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCATTTCGCTTCTGCTCTATTATGATTTGAGCTCTTCTTTCTGACGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp ATATTCTTTGGGTTTCTGTCACCCTATGAAGATAAAATTTGCTTGTaGACTATTCTTTCCCAGCATCCCACTGTTGGTGATGGTGGCAGA +
Preference number: 1 (lower is better)
Translates to: IFFGFLSPYEDKICL*TILSQHPTVGDGGR
Trigger: TCTGCCACCATCACCAACAGTGGGATGCTGGGAAAGAATAGTTCACAAGCAAATTTTATCTTCATAGGGTGACAGAAACCCAAAGAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 90 bp GGGCTAATTCCAACTTGGGTGACTTTTCTCATCATAATACAAACCTaGTTCGATCTGACTCATGTTGAAATCCCAACAGATGTGAAGGTA +
Preference number: 1 (lower is better)
Translates to: GLIPTWVTFLIIIQT*FDLTHVEIPTDVKV
Trigger: TACCTTCACATCTGTTGGGATTTCAACATGAGTCAGATCGAATCAGGTTTGTATTATGATGAGAAAAGTCACCCAAGTTGGAATTAGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp TTTGTAAAAACAGAAACCACGTATCCAATTCTGATCTTTCCTTCCTaGCTCAGAATAGCCTGTACCGCTATGTGGTACAAACCAAATACT +
Preference number: 1 (lower is better)
Translates to: FVKTETTYPILIFPS*LRIACTAMWYKPNT
Trigger: AGTATTTGGTTTGTACCACATAGCGGTACAGGCTATTCTGAGGCAGGAAGGAAAGATCAGAATTGGATACGTGGTTTCTGTTTTTACAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 90 bp TTAATGATAGGGATAAAAATAGAAAGAATCCAGTGTAAGCTGCATTaGAGACCAAACGTCAGGGTGGGAAATGAGCCTTTACAAAAATGC +
Preference number: 1 (lower is better)
Translates to: LMIGIKIERIQCKLH*RPNVRVGNEPLQKC
Trigger: GCATTTTTGTAAAGGCTCATTTCCCACCCTGACGTTTGGTCTGCAATGCAGCTTACACTGGATTCTTTCTATTTTTATCCCTATCATTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp ATCCCTCTCCAGGTTAGCAGCCGCCTTCGTCCGCACACATCGTTGTaGTTTCTTTGGGGGAGTCTGAGCTGTGGCTGTCCATACCATACG +
Preference number: 2 (lower is better)
Translates to: IPLQVSSRLRPHTSL*FLWGSLSCGCPYHT
Trigger: CGTATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGCTGCTAACCTGGAGAGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp AATATCCCTCTCCAGGTTAGCAGCCGCCTTCGTCCGCACACATCGTaGTTGTTTCTTTGGGGGAGTCTGAGCTGTGGCTGTCCATACCAT +
Preference number: 2 (lower is better)
Translates to: NIPLQVSSRLRPHTS*LFLWGSLSCGCPYH
Trigger: ATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGCTGCTAACCTGGAGAGGGATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCTAGACTCCTACCCCTaGTCCTTGCTCCCCTTCCCT +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYLDSYP*SLLPFP
Trigger: AGGGAAGGGGAGCAAGGATCAGGGGTAGGAGTCTAG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCCCGATCGACCCCAGTaGCAGCTATGGTTGCACTCA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYPDRPQ*QLWLHS
Trigger: TGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGCGTGCTGAACATGTaGGAGGAGGCAGCAGACAGA +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRGVLNM*EEAADR
Trigger: TCTGTCTGCTGCCTCCTCCCACATGTTCAGCACGCC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCTCCAGGACACAGAGTaGGGTGGGGCTAGGATGGCA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKLQDTE*GGARMA
Trigger: TGCCATCCTAGCCCCACCCCACTCTGTGTCCTGGAG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGTTCTTTGGGGGAGTCTaGGCTGTGGCTGTCCATACC +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRFFGGV*AVAVHT
Trigger: GGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAA...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp ATACCTCCCTTCAACAATCCCGATCGACCCCAGTGCCAGCTATGGTaGCACTCAAGCTTGTCAGTGCAAACTGGTAATTACTACCTCGAG +
Preference number: 2 (lower is better)
Translates to: IPPFNNPDRPQCQLW*HSSLSVQTGNYYLE
Trigger: CTCGAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGAAGGGAGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGGCCCTCTTTCACTTaGTATGGGAAGGTGACCAAC +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRGPSFT*YGKVTN
Trigger: GTTGGTCACCTTCCCATAGCAAGTGAAAGAGGGCCC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGTCGAAGCTTTTGGCTTaGTCCGAACACCCCTTGGTG +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRSKLLA*SEHPLV
Trigger: CACCAAGGGGTGTTCGGAGCAAGCCAAAAGCTTCGA...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCCCTTGGTGCCCACCTaGGGCCATTCACTGGTAAAT +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKPLVPT*GHSLVN
Trigger: ATTTACCAGTGAATGGCCCCAGGTGGGCACCAAGGG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCCCCAGTGCCAGCTATaGTTGCACTCAAGCTTGTCA +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCPQCQL*LHSSLS
Trigger: TGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGGGGTGGGGCTAGGATaGCAAACTATTTCCAAGCAG +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYGVGLG*QTISKQ
Trigger: CTGCTTGGAAATAGTTTGCCATCCTAGCCCCACCCC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGTTAAATTGGCCTCCTaGGTGTGCATCTGCGCAATG +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCVKLAS*VCICAM
Trigger: CATTGCGCAGATGCACACTCAGGAGGCCAATTTAAC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTATAGGAGGACCTGGGTaGCTTGTAAATCAAGGGCAC +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCIGGPG*LVNQGH
Trigger: GTGCCCTTGATTTACAAGTCACCCAGGTCCTCCTAT...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGACTGCCCACATTGGGTaGATAAAGAGGCAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRTAHIG*IKRQGR
Trigger: TCTGCCTTGCCTCTTTATTCACCCAATGTGGGCAGT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGAGTGCCAGCTATGGTTaGACTCAAGCTTGTCAGTGC +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRSASYG*TQACQC
Trigger: GCACTGACAAGCTTGAGTGCAACCATAGCTGGCACT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGCTCTAGATATGATGTaGCCACCACAGAACTGCCCA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYALDMM*PPQNCP
Trigger: TGGGCAGTTCTGTGGTGGGCACATCATATCTAGAGC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCCTTTCTTCTTCACCTaGTCCCTGCTCACTCACCTG +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKPFFFT*SLLTHL
Trigger: CAGGTGAGTGAGCAGGGAGCAGGTGAAGAAGAAAGG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCAAGAAGGCCCCATTTaGGTCTCTGGGATGCTTAGC +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKQEGPI*VSGMLS
Trigger: GCTAAGCATCCCAGAGACCCAAATGGGGCCTTCTTG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCTCTTTCACTTGCTATaGGAAGGTGACCAACCAGGG +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYLFHLL*EGDQPG
Trigger: CCCTGGTTGGTCACCTTCCCATAGCAAGTGAAAGAG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCTGACCCAGCTGAAATaGGAGCAAGCCTCTGAGGAA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKLTQLK*EQASEE
Trigger: TTCCTCAGAGGCTTGCTCCCATTTCAGCTGGGTCAG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACAATACAGCTGAGGGGTaGGGAGAGGTGGTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYNTAEG*GEVVFF
Trigger: AAAGAAGACCACCTCTCCCCACCCCTCAGCTGTATT...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCCTTTTCTCCAGGACTaGGATACCTCCCTTCAACAA +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCPFLQD*DTSLQQ
Trigger: TTGTTGAAGGGAGGTATCTCAGTCCTGGAGAAAAGG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGGGAACAAGGGGAAAGTaGAAGGAGCACTCCCTAGAT +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKGTRGK*KEHSLD
Trigger: ATCTAGGGAGTGCTCCTTTCACTTTCCCCTTGTTCC...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCACTCTGTTGGTGTGTaGCAGAGGGGTAAATTGATC +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYHSVGV*QRGKLI
Trigger: GATCAATTTACCCCTCTGTCACACACCAACAGAGTG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCTGCTTCTTTGGTGTaGTGTGTTCTCTCCAGGTTC +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSASLV*CVLSRF
Trigger: GAACCTGGAGAGAACACAGCACACCAAAGAAGCAGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCTGATCTTTCCTTCCTaGCTCAGAATAGCCTGTACC +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYLIFPS*LRIACT
Trigger: GGTACAGGCTATTCTGAGGCAGGAAGGAAAGATCAG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGAATTCGGTAAGGAATTaGGCGGTCTGCATTGCCAAC +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRNSVRN*AVCIAN
Trigger: GTTGGCAATGCAGACCGCGCAATTCCTTACCGAATT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACGCACATAGGAGGACCTaGGTGACTTGTAAATCAAGG +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYAHRRT*VTCKSR
Trigger: CCTTGATTTACAAGTCACCCAGGTCCTCCTATGTGC...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTAAGGGACAACGAGATTaGGTTCCCAAAGCTGAAGCT +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCKGQRD*VPKAEA
Trigger: AGCTTCAGCTTTGGGAACCCAATCTCGTTGTCCCTT...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACAACTCTGGAATGGCATaGGAAATGAGCACAGTTGTG +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYNSGMA*EMSTVV
Trigger: CACAACTGTGCTCATTTCTCATGCCATTCCAGAGTT...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGATGGGAGCAAGCCTCTaGGGAAATACGCTTTTTCTT +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRMGASL*GNTLFL
Trigger: AAGAAAAAGCGTATTTCCTCAGAGGCTTGCTCCCAT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCACAGTCTACTGAATaGCTTTTCTCCAGGACTGAG +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSQSTE*LFSRTE
Trigger: CTCAGTCCTGGAGAAAAGGCATTCAGTAGACTGTGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGCTTGTCCACAAATCTaGTCTGTTGTTCTGACAGCA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYACPQI*SVVLTA
Trigger: TGCTGTCAGAACAACAGAGCAGATTTGTGGACAAGC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTTGGAAAGAAGACCTTaGAGATTGGCCTTGATAGGG +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYLERRP*RLALIG
Trigger: CCCTATCAAGGCCAATCTGCAAGGTCTTCTTTCCAA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGACTGGCTAAATCGTTaGTTTGGTTCAAGCAAGGCA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYDWLNR*FGSSKA
Trigger: TGCCTTGCTTGAACCAAAGCAACGATTTAGCCAGTC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTTGTTCTTTCAACCCTaGAACCAGACCCCACTTTCT +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYLFFQP*NQTPLS
Trigger: AGAAAGTGGGGTCTGGTTCCAGGGTTGAAAGAACAA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTCGCCTGGTACCAAGTaGGGCTGTGAACTTAAATTA +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYSPGTK*GCELKL
Trigger: TAATTTAAGTTCACAGCCCCACTTGGTACCAGGCGA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTGCACTGAACTTGGTTaGCATTGTGCTGTGATTAAC +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYCTELG*HCAVIN
Trigger: GTTAATCACAGCACAATGTCAACCAAGTTCAGTGCA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTTGGTTTGCAGTATTCTaGTTCTTTGGTGTGCTGTGT +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCWFAVF*FFGVLC
Trigger: ACACAGCACACCAAAGAAGCAGAATACTGCAAACCA...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCAATCGTATTTCCCATaGTCTGCTGAGGAGAGAAAG +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKQSYFP*SAEERK
Trigger: CTTTCTCTCCTCAGCAGAGCATGGGAAATACGATTG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTGCCTTTTTCCTTCATaGCATCATCTTCCAAGGATG +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYCLFPS*HHLPRM
Trigger: CATCCTTGGAAGATGATGGCATGAAGGAAAAAGGCA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACAATTCGGTGATCAACTaGTTGGAAAGAAGACCTTGC +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYNSVIN*LERRPC
Trigger: GCAAGGTCTTCTTTCCAAGCAGTTGATCACCGAATT...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTAGGAATTGCGCGGTCTaGATTGCCAACATGCCCAGG +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPRNCAV*IANMPR
Trigger: CCTGGGCATGTTGGCAATGCAGACCGCGCAATTCCT...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCTGAGGCCGAACTGTaGACATGTTCACAGTTTAAT +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSEAEL*TCSQFN
Trigger: ATTAAACTGTGAACATGTGCACAGTTCGGCCTCAGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATAGTATTCTGCTTCTTTaGTGTGCTGTGTTCTCTCCA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSILLL*CAVFSP
Trigger: TGGAGAGAACACAGCACACCAAAGAAGCAGAATACT...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGACAACAAAAATTTTaGGTTGTCACCAATGCGGGT +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRGQQKF*VVTNAG
Trigger: ACCCGCATTGGTGACAACCCAAAATTTTTGTTGTCC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGTATTGCAATAGAAGTTaGATTTCCCCAGGAGAAGCC +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRYCNRS*ISPGEA
Trigger: GGCTTCTCCTGGGGAAATCCAACTTCTATTGCAATA...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCCTGCAAAATGTGCTTaGAGCCATATTCCCAATAAT +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRPAKCA*SHIPNN
Trigger: ATTATTGGGAATATGGCTTCAAGCACATTTTGCAGG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGTTACAGAGGTGCTCTaGTCTCTAAAAGTAATCACA +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCVTEVL*SLKVIT
Trigger: TGTGATTACTTTTAGAGATCAGAGCACCTCTGTAAC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGAGATGGTGATTTCCAGTaGTTGGTGGAACCATTTACT +
Preference number: 2 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRDGDFQ*LVEPFT
Trigger: AGTAAATGGTTCCACCAATCACTGGAAATCACCATC...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGAATGGAAAAAGTCAGTaGGGTAGCCTTCTTTGGTTC +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKNGKSQ*GSLLWF
Trigger: GAACCAAAGAAGGCTACCTCACTGACTTTTTCCATT...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCGGGTGTCAGAGTGTaGAGATTATTCTTAAAAGGA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSGVRV*RLFLKG
Trigger: TCCTTTTAAGAATAATCTTCACACTCTGACACCCGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACAGTCATATTACTGTTTaGGTCAATATGCTTGCCAGG +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYSHITV*VNMLAR
Trigger: CCTGGCAAGCATATTGACTCAAACAGTAATATGACT...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGAAACCTGATTCGATCTaGCTCATGTTGAAATCCCAA +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRKPDSI*LMLKSQ
Trigger: TTGGGATTTCAACATGAGTCAGATCGAATCAGGTTT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCAAGATGCTTTGTTCTaGAGTCTGTACTCAAGCAGA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKQDALF*SLYSSR
Trigger: TCTGCTTGAGTACAGACTGCAGAACAAAGCATCTTG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCTAACCAAAGCAAGATaGTTTGTTCTGCAGTCTGTA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYLTKAR*FVLQSV
Trigger: TACAGACTGCAGAACAAAGCATCTTGCTTTGGTTAG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCAAGGACAAGGTCTATaGCATGTAAAAATGACTGCT +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYQGQGL*HVKMTA
Trigger: AGCAGTCATTTTTACATGGCATAGACCTTGTCCTTG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGACCAGACCCCACTTTCTaGCATTGGTTTGTACTTTAT +
Preference number: 2 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRPDPTF*HWFVLY
Trigger: ATAAAGTACAAACCAATGGCAGAAAGTGGGGTCTGG...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTCTTATTCCTGTAGTTaGAGTAGCTTGGGACACTTT +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYSYSCS*SSLGHF
Trigger: AAAGTGTCCCAAGCTACTGCAACTACAGGAATAAGA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATAAGAAAATGGACACCTaGCCTATGATTACAGCTAGA +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYKKMDT*PMITAR
Trigger: TCTAGCTGTAATCATAGGCCAGGTGTCCATTTTCTT...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGAGGATGAATCAGCAATaGAAGAGAGTTAGGAAGAGA +
Preference number: 2 (lower is better)
Translates to: SSSPFSELQNLVADWVLRRMNQQ*KRVRKR
Trigger: TCTCTTCCTAACTCTCTTCCATTGCTGATTCATCCT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp TTCTTCACCTGCTCCCTGCTCACTCACCTGGTAAGACTAGCAAGTTaGAATCAGAGCATTACTCTCCTAATATTGCTACAGGACAGTAAA +
Preference number: 2 (lower is better)
Translates to: FFTCSLLTHLVRLAS*NQSITLLILLQDSK
Trigger: TTTACTGTCCTGTAGCAATATTAGGAGAGTAATGCTCTGATTCAAACTTGCTAGTCTTACCAGGTGAGTGAGCAGGGAGCAGGTGAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp GCTCATAACTGTAAGCTCACCACTAAGCACATAGAGGCAGAAGGATaGGGAGTTCAAAGCCATCTTCTACACAATGAGTTTAAAGCTACC +
Preference number: 2 (lower is better)
Translates to: AHNCKLTTKHIEAEG*GVQSHLLHNEFKAT
Trigger: GGTAGCTTTAAACTCATTGTGTAGAAGATGGCTTTGAACTCCCAATCCTTCTGCCTCTATGTGCTTAGTGGTGAGCTTACAGTTATGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGTCCTCATTTGGAGATaGCTTGTGCCCAGGTGGAGA +
Preference number: 2 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPVLIWR*LVPRWR
Trigger: TCTCCACCTGGGCACAAGTCATCTCCAAATGAGGAC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGAGCACAGTTGTGAAATaGATGCTTAACAAATGGTGC +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKSTVVK*MLNKWC
Trigger: GCACCATTTGTTAAGCATTCATTTCACAACTGTGCT...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTCCAGCAGCACAGCTCTaGGCTAGTCTGATGGATAAA +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPPAAQL*ASLMDK
Trigger: TTTATCCATCAGACTAGCTCAGAGCTGTGCTGCTGG...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGTTTCAAGAGAATTGTaGTTTCAAGTCACCAGTGAA +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCVSREL*FQVTSE
Trigger: TTCACTGGTGACTTGAAAGCACAATTCTCTTGAAAC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGACAACCTGCAAAATGTaGTTGAAGCCATATTCCCAA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKTTCKM*LKPYSQ
Trigger: TTGGGAATATGGCTTCAAGCACATTTTGCAGGTTGT...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGAACTCAAGCTTGTCAGTaGAAACTGGTAATTACTACC +
Preference number: 2 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRTQACQ*KLVITT
Trigger: GGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGT...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTATGGGGAATTACCCTaGTGCTTGGTGAATTTATGT +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKYGELP*CLVNLC
Trigger: ACATAAATTCACCAAGCAGCAGGGTAATTCCCCATA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTCTTCTGTAGTGTTTTaGAATCCTGTGTCTATACTC +
Preference number: 2 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYSSVVF*NPVSIL
Trigger: GAGTATAGACACAGGATTCCAAAACACTACAGAAGA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTAGAGACGACAGGAAGTaGCTTATTAAACTGTTTCTT +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCRDDRK*LIKLFL
Trigger: AAGAAACAGTTTAATAAGCCACTTCCTGTCGTCTCT...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCATTTACTCATTCAATaGGACAGTTCTGTTTGTTGC +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYHLLIQ*DSSVCC
Trigger: GCAACAAACAGAACTGTCCCATTGAATGAGTAAATG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATACAGTGTGTCTTCGGTaGTTTTGTTGTTTCTTTCAT +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYTVCLR*FCCFFH
Trigger: ATGAAAGAAACAACAAAACCACCGAAGACACACTGT...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGATGGAAAATGGATTTCTaGTGTTTTGCTCCACAACAG +
Preference number: 2 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRWKMDF*CFAPQQ
Trigger: CTGTTGTGGAGCAAAACACCAGAAATCCATTTTCCA...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTACTGGCCGGACATGGTaGCTCATAACTGTAAGCTCA +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPTGRTW*LITVSS
Trigger: TGAGCTTACAGTTATGAGCCACCATGTCCGGCCAGT...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCTAGATCTTCTTAAATaGTGCATTTGCTCCTGTACT +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKLDLLK*CICSCT
Trigger: AGTACAGGAGCAAATGCATCATTTAAGAAGATCTAG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTCCCAAAAGGTCTGTTTaGACACAGTGTGTCTTCGGT +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPPKRSV*TQCVFG
Trigger: ACCGAAGACACACTGTGTTCAAACAGACCTTTTGGG...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTCGTTGGGTCACAACTaGAAGAGAAACGTTAAAATA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKSLGHN*KRNVKI
Trigger: TATTTTAACGTTTCTCTTTCAGTTGTGACCCAACGA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTTATCCAATGAAAAGATaGCTGAGTTGGAAAAACATG +
Preference number: 2 (lower is better)
Translates to: THTHTQLANTTSTRPHLCYPMKR*LSWKNM
Trigger: CATGTTTTTCCAACTCAGGCATCTTTTCATTGGATA...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTCACTGCTAAAGGATTaGTACTTTCCTACATTCAGA +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKSLLKD*YFPTFR
Trigger: TCTGAATGTAGGAAAGTAGCAATCCTTTAGCAGTGA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATAAATGTTGTAATGGGTaGATTCCACAGTCATATTAC +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYKCCNG*IPQSYY
Trigger: GTAATATGACTGTGGAATGCACCCATTACAACATTT...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCAGAGGATAGTGTCTaGTTCAAAGAGATTAACTTT +
Preference number: 2 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSEDSV*FKEINF
Trigger: AAAGTTAATCTCTTTGAACCAGACACTATCCTCTGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGAAAAGATGCCTGAGTTaGAAAAACATGTCCTTGGAT +
Preference number: 2 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKKRCLS*KNMSLD
Trigger: ATCCAAGGACATGTTTTTCCAACTCAGGCATCTTTT...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGAATATTAACAGCTCGTTaGGTCACAACTGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRILTAR*VTTERE
Trigger: TTCTCTTTCAGTTGTGACCCAACGAGCTGTTAATAT...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTCAGAGAGGTCCAGACTaGCTAAATCGTTGCTTTGGT +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPQRGPD*LNRCFG
Trigger: ACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTG...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp AACACTATTATCTATGAGGTATATCTGAGAAAATTCGGTAAGGAATaGCGCGGTCTGCATTGCCAACATGCCCAGGTTCATGTTAAAGCT +
Preference number: 2 (lower is better)
Translates to: NTIIYEVYLRKFGKE*RGLHCQHAQVHVKA
Trigger: AGCTTTAACATGAACCTGGGCATGTTGGCAATGCAGACCGCGCAATTCCTTACCGAATTTTCTCAGATATACCTCATAGATAATAGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTGCCAGACAACCACAGTaGCTATTTAACTCTGGAATG +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPARQPQ*LFNSGM
Trigger: CATTCCAGAGTTAAATAGCCACTGTGGTTGTCTGGC...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTGCACTTCAGGACCTGTaGACTTATAGCAAAACCCAT +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPALQDL*TYSKTH
Trigger: ATGGGTTTTGCTATAAGTCCACAGGTCCTGAAGTGC...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp ATGCTTTGTTCTGCAGTCTGTACTCAAGCAGAACCACCCATTCCATaGTCCACAAGTCACAAAGACTCATTTAGTAAGATCCAAGTTAAT +
Preference number: 2 (lower is better)
Translates to: MLCSAVCTQAEPPIP*STSHKDSFSKIQVN
Trigger: ATTAACTTGGATCTTACTAAATGAGTCTTTGTGACTTGTGGACAATGGAATGGGTGGTTCTGCTTGAGTACAGACTGCAGAACAAAGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp GAAGGAAGAGACGTAGAGAAAGAACCTTTGGTATTAGTACAAATCTaGTTCTTTGCAGGGTTGCATTGCAAAGCACCACAGTACAATAAG +
Preference number: 2 (lower is better)
Translates to: EGRDVEKEPLVLVQI*FFAGLHCKAPQYNK
Trigger: CTTATTGTACTGTGGTGCTTTGCAATGCAACCCTGCAAAGAACAAGATTTGTACTAATACCAAAGGTTCTTTCTCTACGTCTCTTCCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTTCTGCGGTTAGCAAATaGCACAGAACTGTTAAACTC +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPSAVSK*HRTVKL
Trigger: GAGTTTAACAGTTCTGTGTCATTTGCTAACCGCAGA...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR TCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTATGTCTACTGGGAACTaGCAACAGAATCTAATTCCC +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPMSTGN*QQNLIP
Trigger: GGGAATTAGATTCTGTTGTCAGTTCCCAGTAGACAT...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp GAGAAAGAACCTTTGGTATTAGTACAAATCTTGTTCTTTGCAGGGTaGCATTGCAAAGCACCACAGTACAATAAGCCTACCAATTTACTG +
Preference number: 2 (lower is better)
Translates to: EKEPLVLVQILFFAG*HCKAPQYNKPTNLL
Trigger: CAGTAAATTGGTAGGCTTATTGTACTGTGGTGCTTTGCAATGCAACCCTGCAAAGAACAAGATTTGTACTAATACCAAAGGTTCTTTCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR GCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTGAGTTTGTAACAACCTaGAAAATGTGCTTGAAGCCA +
Preference number: 2 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPEFVTT*KMCLKP
Trigger: TGGCTTCAAGCACATTTTGCAGGTTGTTACAAACTC...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp ACAAATGGTGCATACGAGAAAACAAATAGTTGGACAACAAAAATTTaGGGTTGTCACCAATGCGGGTTAATCTATACGTGTACTCGTACA +
Preference number: 2 (lower is better)
Translates to: TNGAYEKTNSWTTKI*GCHQCGLIYTCTRT
Trigger: TGTACGAGTACACGTATAGATTAACCCGCATTGGTGACAACCCAAAATTTTTGTTGTCCAACTATTTGTTTTCTCGTATGCACCATTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 90 bp GACAGGAGGAATCACCTACCAAAAGTGAGAGTCAAGTATCCTGGCTaGATAAATATTGACTTTAGAATAGCCATGGTAATTAAACTCAAT +
Preference number: 2 (lower is better)
Translates to: DRRNHLPKVRVKYPG*INIDFRIAMVIKLN
Trigger: ATTGAGTTTAATTACCATGGCTATTCTAAAGTCAATATTTATCAAGCCAGGATACTTGACTCTCACTTTTGGTAGGTGATTCCTCCTGTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp AGTTCTGTGGGCCCTCTTTCACTTGCTATGGGAAGGTaGCCAACCAGGGCTGGCGTGGCGAAGTCACTGCCC +
Preference number: 3 (lower is better)
Translates to: SSVGPLSLAMGR*PTRAGVAKSLP
Trigger: GGGCAGTGACTTCGCCACGCCAGCCCTGGTTGGTCACCTTCCCATAGCAAGTGAAAGAGGGCCCACAGAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp TCTCCCAGAGTTCTGTGGGCCCTCTTTCACTTGCTATaGGAAGGTGACCAACCAGGGCTGGCGTGGCGAAGT +
Preference number: 3 (lower is better)
Translates to: SPRVLWALFHLL*EGDQPGLAWRS
Trigger: ACTTCGCCACGCCAGCCCTGGTTGGTCACCTTCCCATAGCAAGTGAAAGAGGGCCCACAGAACTCTGGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp AACTACTCCAACCTGGGCCCCAGTGGGGTGACTGTATaGGTCCTAGGGTCCCTTCCAGCTCTCCTACCCAAT +
Preference number: 3 (lower is better)
Translates to: NYSNLGPSGVTV*VLGSLPALLPN
Trigger: ATTGGGTAGGAGAGCTGGAAGGGACCCTAGGACCCATACAGTCACCCCACTGGGGCCCAGGTTGGAGTAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp AAGATCCCAGTGACAGCAGCGTCCCAACTGGCGTGCTaGACATGTGGGAGGAGGCAGCAGACAGATGCAAGA +
Preference number: 3 (lower is better)
Translates to: KIPVTAASQLAC*TCGRRQQTDAR
Trigger: TCTTGCATCTGTCTGCTGCCTCCTCCCACATGTTCAGCACGCCAGTTGGGACGCTGCTGTCACTGGGATCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CACTTGCTATGGGAAGGTGACCAACCAGGGCTGGCGTaGCGAAGTCACTGCCCGGATATTTGGCTAATGTCA +
Preference number: 3 (lower is better)
Translates to: HLLWEGDQPGLA*RSHCPDIWLMS
Trigger: TGACATTAGCCAAATATCCGGGCAGTGACTTCGCCACGCCAGCCCTGGTTGGTCACCTTCCCATAGCAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp AGCCGCCTTCGTCCGCACACATCGTTGTTGTTTCTTTaGGGGAGTCTGAGCTGTGGCTGTCCATACCATACG +
Preference number: 3 (lower is better)
Translates to: SRLRPHTSLLFL*GSLSCGCPYHT
Trigger: CGTATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CTTTTGGCTTGCTCCGAACACCCCTTGGTGCCCACCTaGGGCCATTCACTGGTAAATATGCACATAGTGACC +
Preference number: 3 (lower is better)
Translates to: LLACSEHPLVPT*GHSLVNMHIVT
Trigger: GGTCACTATGTGCATATTTACCAGTGAATGGCCCCAGGTGGGCACCAAGGGGTGTTCGGAGCAAGCCAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CAGTCTCAAGTGTCTGTAAAGAGTCATCGAAGCTTTTaGCTTGCTCCGAACACCCCTTGGTGCCCACCTGGG +
Preference number: 3 (lower is better)
Translates to: QSQVSVKSHRSF*LAPNTPWCPPG
Trigger: CCCAGGTGGGCACCAAGGGGTGTTCGGAGCAAGCCAAAAGCTTCGATGACTCTTTACAGACACTTGAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp ATCCGGGCTGATGACGTTGGATCTCAGCTTGAGTTCTaGAGCAGGTTCAGGCTGATCAGTCACTGCTTGTCC +
Preference number: 3 (lower is better)
Translates to: IRADDVGSQLEF*SRFRLISHCLS
Trigger: GGACAAGCAGTGACTGATCAGCCTGAACCTGCTTCAGAACTCAAGCTGAGATCCAACGTCATCAGCCCGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CCCTTCAACAATCCCGATCGACCCCAGTGCCAGCTATaGTTGCACTCAAGCTTGTCAGTGCAAACTGGTAAT +
Preference number: 3 (lower is better)
Translates to: PFNNPDRPQCQL*LHSSLSVQTGN
Trigger: ATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCAGTGCCAGCTATGGTaGCACTCAAGCTTGTCAGTG +
Preference number: 3 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYQCQLW*HSSLSV
Trigger: CACTGACAAGCTTGAGTGCAACCATAGCTGGCACTG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGTGTTCAGGCTGCCATaGCTCTTTCTAGATCCTCCC +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRVFRLP*LFLDPP
Trigger: GGGAGGATCTAGAAAGAGCAATGGCAGCCTGAACAC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp AATAGAAAGGCTCTGAGGGCCCCGGTAATTAAGAGGTaGAATTCGCCTGGTACCAAGTGGGGCTGTGAACTT +
Preference number: 3 (lower is better)
Translates to: NRKALRAPVIKR*NSPGTKWGCEL
Trigger: AAGTTCACAGCCCCACTTGGTACCAGGCGAATTTCACCTCTTAATTACCGGGGCCCTCAGAGCCTTTCTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp GTCCGCACACATCGTTGTTGTTTCTTTGGGGGAGTCTaGGCTGTGGCTGTCCATACCATACGTCAGAAAGAA +
Preference number: 3 (lower is better)
Translates to: VRTHRCCFFGGV*AVAVHTIRQKE
Trigger: TTCTTTCTGACGTATGGTATGGACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp CCCAGTGCCAGCTATGGTTGCACTCAAGCTTGTCAGTaGAAACTGGTAATTACTACCTCGAGGAGACCTGAT +
Preference number: 3 (lower is better)
Translates to: PSASYGCTQACQ*KLVITTSRRPD
Trigger: ATCAGGTCTCCTCGAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CAACCTAAGAAACTGCTGCTGCGTCATATCAGCCCTTaGCTCCAAATTTCAGGAGCTCTTAACGTCTCCACC +
Preference number: 3 (lower is better)
Translates to: QPKKLLLRHISP*LQISGALNVST
Trigger: GGTGGAGACGTTAAGAGCTCCTGAAATTTGGAGCCAAGGGCTGATATGACGCAGCAGCAGTTTCTTAGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CACAGGCCTGGTAGAAATATTCAGAGGAGCAACAGATaGAGTGGGGGAAAGGCCAGGATCTTTCTCCATCAT +
Preference number: 3 (lower is better)
Translates to: HRPGRNIQRSNR*SGGKARIFLHH
Trigger: ATGATGGAGAAAGATCCTGGCCTTTCCCCCACTCCATCTGTTGCTCCTCTGAATATTTCTACCAGGCCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp ACTAGGAGTTGGGTTTCCATTCAAGGCTTAGAGTCCTaGATCCACCACCCACAGCAGGAAAAAGAGCCAAGT +
Preference number: 3 (lower is better)
Translates to: TRSWVSIQGLES*IHHPQQEKEPS
Trigger: ACTTGGCTCTTTTTCCTGCTGTGGGTGGTGGATCCAGGACTCTAAGCCTTGAATGGAAACCCAACTCCTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp GACATTCAAGCGACAATCGTATTTCCCATGCTCTGCTaGGGAGAGAAAGGGACACCTTTCAGTATCCCGACA +
Preference number: 3 (lower is better)
Translates to: DIQATIVFPMLC*GEKGTPFSIPT
Trigger: TGTCGGGATACTGAAAGGTGTCCCTTTCTCTCCTCAGCAGAGCATGGGAAATACGATTGTCGCTTGAATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp ACTCACTCCAAGAAGGCCCCATTTGGGTCTCTGGGATaGTTAGCATACTCAGAGGATAGTGTCTGGTTCAAA +
Preference number: 3 (lower is better)
Translates to: THSKKAPFGSLG*LAYSEDSVWFK
Trigger: TTTGAACCAGACACTATCCTCTGAGTATGCTAAGCATCCCAGAGACCCAAATGGGGCCTTCTTGGAGTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp TCAACAATCCCGATCGACCCCAGTGCCAGCTATGGTTaGACTCAAGCTTGTCAGTGCAAACTGGTAATTACT +
Preference number: 3 (lower is better)
Translates to: STIPIDPSASYG*TQACQCKLVIT
Trigger: AGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp GAAAAGATGTCTCCAGCATCCTCACTGACAGACATGTaGGATGCTCTGCTGTCTGTTGGTGAGTTCCAGAAT +
Preference number: 3 (lower is better)
Translates to: EKMSPASSLTDM*DALLSVGEFQN
Trigger: ATTCTGGAACTCACCAACAGACAGCAGAGCATCGCACATGTCTGTCAGTGAGGATGCTGGAGACATCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTAGATTACCGAGTGAGTaGTCATATGAAGCAGCAGCC +
Preference number: 3 (lower is better)
Translates to: THTHTQLANTTSTRPHLCRLPSE*SYEAAA
Trigger: GGCTGCTGCTTCATATGACAACTCACTCGGTAATCT...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCCTAGAGGGGATTTCTaGCCTTTTTCCTTCATGCCA +
Preference number: 3 (lower is better)
Translates to: THTHTQLANTTSTRPHLCPRGDF*PFSFMP
Trigger: TGGCATGAAGGAAAAAGGCAAGAAATCCCCTCTAGG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCTTTGCAGGGTTGCATaGCAAAGCACCACAGTACAA +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRLCRVA*QSTTVQ
Trigger: TTGTACTGTGGTGCTTTGCAATGCAACCCTGCAAAG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGTGGATTTCTGGTGTTTaGCTCCACAACAGATGGGAA +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRWISGV*LHNRWE
Trigger: TTCCCATCTGTTGTGGAGCAAAACACCAGAAATCCA...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCCAAAGCAAGATGCTTaGTTCTGCAGTCTGTACTCA +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRPKQDA*FCSLYS
Trigger: TGAGTACAGACTGCAGAACAAAGCATCTTGCTTTGG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCACGTCTGTACACACTaGTGTGTACACAGTCTAGAT +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRHVCTH*CVHSLD
Trigger: ATCTAGACTGTGTACACACAAGTGTGTACAGACGTG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CTTACAGCTGCACTGAACTTGGTTGACATTGTGCTGTaGTTAACTCACTCCAAGAAGGCCCCATTTGGGTCT +
Preference number: 3 (lower is better)
Translates to: LTAALNLVDIVL*LTHSKKAPFGS
Trigger: AGACCCAAATGGGGCCTTCTTGGAGTGAGTTAATCACAGCACAATGTCAACCAAGTTCAGTGCAGCTGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TTGGATCTCAGCTTGAGTTCTGAAGCAGGTTCAGGCTaGTCAGTCACTGCTTGTCCACAAATCTGCTCTGTT +
Preference number: 3 (lower is better)
Translates to: LDLSLSSEAGSG*SVTACPQICSV
Trigger: AACAGAGCAGATTTGTGGACAAGCAGTGACTGATCAGCCTGAACCTGCTTCAGAACTCAAGCTGAGATCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TCGTTATCAATGAAAAGATGTCTCCAGCATCCTCACTaGCAGACATGTGCGATGCTCTGCTGTCTGTTGGTG +
Preference number: 3 (lower is better)
Translates to: SLSMKRCLQHPH*QTCAMLCCLLV
Trigger: CACCAACAGACAGCAGAGCATCGCACATGTCTGTCAGTGAGGATGCTGGAGACATCTTTTCATTGATAACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CAAGACCACCAAGTTCCCACCATGCCCTTTACTGTATaGATTAGGATCTGCCTTCATGCTGGTATTCGCTCA +
Preference number: 3 (lower is better)
Translates to: QDHQVPTMPFTV*IRICLHAGIRS
Trigger: TGAGCGAATACCAGCATGAAGGCAGATCCTAATTCATACAGTAAAGGGCATGGTGGGAACTTGGTGGTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp AGGACTTGGAGACACAAGACCACCAAGTTCCCACCATaGCCTTTACTGTATGAATTAGGATCTGCCTTCATG +
Preference number: 3 (lower is better)
Translates to: RTWRHKTTKFPP*PLLYELGSAFM
Trigger: CATGAAGGCAGATCCTAATTCATACAGTAAAGGGCATGGTGGGAACTTGGTGGTCTTGTGTCTCCAAGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp GAAACCCTTGCAGGAGTCAAGATGGAAGAAAGTCCTTaGGTAAAGGACTTGGAGACACAAGACCACCAAGTT +
Preference number: 3 (lower is better)
Translates to: ETLAGVKMEESP*VKDLETQDHQV
Trigger: AACTTGGTGGTCTTGTGTCTCCAAGTCCTTTACGCAAGGACTTTCTTCCATCTTGACTCCTGCAAGGGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp TCCAAATTTCAGGAGCTCTTAACGTCTCCACCCAGATaGTTGTATTCTCGTTTTGGGAAGTCCAGTGAGAGC +
Preference number: 3 (lower is better)
Translates to: SKFQELLTSPPR*LYSRFGKSSES
Trigger: GCTCTCACTGGACTTCCCAAAACGAGAATACAAGCATCTGGGTGGAGACGTTAAGAGCTCCTGAAATTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp CTGAAGACAGGGATAGAAAGCAACCTAAGAAACTGCTaGTGCGTCATATCAGCCCTTGGCTCCAAATTTCAG +
Preference number: 3 (lower is better)
Translates to: LKTGIESNLRNC*CVISALGSKFQ
Trigger: CTGAAATTTGGAGCCAAGGGCTGATATGACGCAGCAGCAGTTTCTTAGGTTGCTTTCTATCCCTGTCTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp TCCTACCCAATTCTTATTCCTGTAGTTGCAGTAGCTTaGGACACTTTTCCCTGTGATAGCTCCAGGACACAG +
Preference number: 3 (lower is better)
Translates to: SYPILIPVVAVA*DTFPCDSSRTQ
Trigger: CTGTGTCCTGGAGCTATCACAGGGAAAAGTGTCCCAAGCTACTGCAACTACAGGAATAAGAATTGGGTAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp GCTCTGCTGTCTGTTGGTGAGTTCCAGAATTCTGCATaGCAGACTGTTGAGTCCATCATTATTCCTCATCTC +
Preference number: 3 (lower is better)
Translates to: ALLSVGEFQNSA*QTVESIIIPHL
Trigger: GAGATGAGGAATAATGATGGACTCAACAGTCTGCCATGCAGAATTCTGGAACTCACCAACAGACAGCAGAGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGAGCGTGCTTTTTCTGTaGATGGTGATTTCCAGTGAT +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRSVLFL*MVISSD
Trigger: ATCACTGGAAATCACCATCAACAGAAAAAGCACGCT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTGGACAACAAAAATTTaGGGTTGTCACCAATGCGGG +
Preference number: 3 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKWTTKI*GCHQCG
Trigger: CCCGCATTGGTGACAACCCAAAATTTTTGTTGTCCA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp AGGGCTATTGATGCTTACAGCTGCACTGAACTTGGTTaGCATTGTGCTGTGATTAACTCACTCCAAGAAGGC +
Preference number: 3 (lower is better)
Translates to: RAIDAYSCTELG*HCAVINSLQEG
Trigger: GCCTTCTTGGAGTGAGTTAATCACAGCACAATGTCAACCAAGTTCAGTGCAGCTGTAAGCATCAATAGCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp ACTATGACTTGCAGGAAACTAGTGTTAGCAAGAGGTTaGCAGGGCCTGAATAGGGCTATTGATGCTTACAGC +
Preference number: 3 (lower is better)
Translates to: TMTCRKLVLARG*QGLNRAIDAYS
Trigger: GCTGTAAGCATCAATAGCCCTATTCAGGCCCTGTCAACCTCTTGCTAACACTAGTTTCCTGCAAGTCATAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp ATCTTTCACTTCCCTGTGGCTGTTATGAGAGTAACTTaGGGTCAATGGGCACTTCAGGACCTGTGGACTTAT +
Preference number: 3 (lower is better)
Translates to: IFHFPVAVMRVT*GQWALQDLWTY
Trigger: ATAAGTCCACAGGTCCTGAAGTGCCCATTGACCTCAAGTTACTCTCATAACAGCCACAGGGAAGTGAAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CCATACTCCACATCCCTGCTCTTGTCACGGCCCCTGTaGCAACATAGGTCTCTTCCATTTTCAAACTTTAAA +
Preference number: 3 (lower is better)
Translates to: PYSTSLLLSRPL*QHRSLPFSNFK
Trigger: TTTAAAGTTTGAAAATGGAAGAGACCTATGTTGTCACAGGGGCCGTGACAAGAGCAGGGATGTGGAGTATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp CTGAGAAAATTCGGTAAGGAATTGCGCGGTCTGCATTaGCAACATGCCCAGGTTCATGTTAAAGCTTTGGAA +
Preference number: 3 (lower is better)
Translates to: LRKFGKELRGLH*QHAQVHVKALE
Trigger: TTCCAAAGCTTTAACATGAACCTGGGCATGTTGGCAATGCAGACCGCGCAATTCCTTACCGAATTTTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CTTGCACACTTTAGAAAGAAGATAACTGGCCGGACATaGTGGCTCATAACTGTAAGCTCACCACTAAGCACA +
Preference number: 3 (lower is better)
Translates to: LAHFRKKITGRT*WLITVSSPLST
Trigger: TGTGCTTAGTGGTGAGCTTACAGTTATGAGCCACCATGTCCGGCCAGTTATCTTCTTTCTAAAGTGTGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp ATAGTGATATATCTGGGTTATGAGGCTCCAGAGTTGTaGGGTTCTAGTGGGCTAATTCCAACTTGGGTGACT +
Preference number: 3 (lower is better)
Translates to: IVIYLGYEAPEL*GSSGLIPTWVT
Trigger: AGTCACCCAAGTTGGAATTAGCCCACTAGAACCCCACAACTCTGGAGCCTCATAACCCAGATATATCACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGAAGTTTCAAGAGAATaGTGCTTTCAAGTCACCAGT +
Preference number: 3 (lower is better)
Translates to: SELQNLVADWVLRGAYWYEVSRE*CFQVTS
Trigger: ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGATGTTATGAGAGTAACTaGAGGTCAATGGGCACTTCA +
Preference number: 3 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRCYESN*RSMGTS
Trigger: TGAAGTGCCCATTGACCTCAAGTTACTCTCATAACA...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCTTTCTGCCATTGGTTaGTACTTTATTCCACATCAC +
Preference number: 3 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYLSAIG*YFIPHH
Trigger: GTGATGTGGAATAAAGTACAAACCAATGGCAGAAAG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGAATCTTTGGTATCTTaGGTGTCGTCAACACGATTA +
Preference number: 3 (lower is better)
Translates to: SSSPFSELQNLVADWVLRESLVS*VSSTRL
Trigger: TAATCGTGTTGACGACACCAAAGATACCAAAGATTC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATCAGTCATATTACTGTTaGAGTCAATATGCTTGCCAG +
Preference number: 3 (lower is better)
Translates to: SELQNLVADWVLRGAYWYQSYYC*SQYACQ
Trigger: CTGGCAAGCATATTGACTCAAACAGTAATATGACTG...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CAGCCTACTTATAAGGCCGTTCCTTCTCGTTATCAATaGAAAGATGTCTCCAGCATCCTCACTGACAGACAT +
Preference number: 3 (lower is better)
Translates to: QPTYKAVPSRYQ*KDVSSILTDRH
Trigger: ATGTCTGTCAGTGAGGATGCTGGAGACATCTTTTCATTGATAACGAGAAGGAACGGCCTTATAAGTAGGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp ATGGCAGGTAACAAATGTCTTTGGTTTGCAGTATTCTaGTTCTTTGGTGTGCTGTGTTCTCTCCAGGTTCTG +
Preference number: 3 (lower is better)
Translates to: MAGNKCLWFAVF*FFGVLCSLQVL
Trigger: CAGAACCTGGAGAGAACACAGCACACCAAAGAAGCAGAATACTGCAAACCAAAGACATTTGTTACCTGCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp ACAGAAACCACGTATCCAATTCTGATCTTTCCTTCCTaGCTCAGAATAGCCTGTACCGCTATGTGGTACAAA +
Preference number: 3 (lower is better)
Translates to: TETTYPILIFPS*LRIACTAMWYK
Trigger: TTTGTACCACATAGCGGTACAGGCTATTCTGAGGCAGGAAGGAAAGATCAGAATTGGATACGTGGTTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp AGAAAAGGTGATGTTGCTTATGGGGAATTACCCTGCTaGTTGGTGAATTTATGTTCTCCCAGGTATTCTGGG +
Preference number: 3 (lower is better)
Translates to: RKGDVAYGELPC*LVNLCSPRYSG
Trigger: CCCAGAATACCTGGGAGAACATAAATTCACCAAGCAGCAGGGTAATTCCCCATAAGCAACATCACCTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp GCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCCTaGTGCTTGGTGAATTTATGTTCTCCCAGGTATTCT +
Preference number: 3 (lower is better)
Translates to: ARKGDVAYGELP*CLVNLCSPRYS
Trigger: AGAATACCTGGGAGAACATAAATTCACCAAGCAGCAGGGTAATTCCCCATAAGCAACATCACCTTTTCTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGGTTGTGCTTGATACTTaGAGCTCAAGTGAATTGACT +
Preference number: 3 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKVVLDT*SSSELT
Trigger: AGTCAATTCACTTGAGCTCAAAGTATCAAGCACAAC...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTTCACTCAATATTCTTaGGGTTTCTGTCACCCTATG +
Preference number: 3 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKFTQYS*GFCHPM
Trigger: CATAGGGTGACAGAAACCCAAAGAATATTGAGTGAA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTTCACTGCTAAAGGATaGCTACTTTCCTACATTCAG +
Preference number: 3 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKFTAKG*LLSYIQ
Trigger: CTGAATGTAGGAAAGTAGCAATCCTTTAGCAGTGAA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TGTCATATGAAGCAGCAGCCATTGAGGCTCGTCTGTTaGTTTGTGTCTCAACCCTTTCTTTCAAATCTGCTT +
Preference number: 3 (lower is better)
Translates to: CHMKQQPLRLVC*FVSQPFLSNLL
Trigger: AAGCAGATTTGAAAGAAAGGGTTGAGACACAAATCAACAGACGAGCCTCAATGGCTGCTGCTTCATATGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TATTCATCTGACCCAGCTGAAATGGGAGCAAGCCTCTaGGGAAATACGCTTTTTCTTGGTCATTTGACCATA +
Preference number: 3 (lower is better)
Translates to: YSSDPAEMGASL*GNTLFLGHLTI
Trigger: TATGGTCAAATGACCAAGAAAAAGCGTATTTCCTCAGAGGCTTGCTCCCATTTCAGCTGGGTCAGATGAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TCTGTAAGAGTCTTCTTTCTGGCTTTAGTGAGTAACTaGAACCCTTGCAGGAGTCAAGATGGAAGAAAGTCC +
Preference number: 3 (lower is better)
Translates to: SVRVFFLALVSN*NPCRSQDGRKS
Trigger: GGACTTTCTTCCATCTTGACTCCTGCAAGGGTTTCAGTTACTCACTAAAGCCAGAAAGAAGACTCTTACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp ATTCCACAGTCATATTACTGTTTGAGTCAATATGCTTaGCAGGGTAGAACCCCTGAAGAAGCCCTAGAATGT +
Preference number: 3 (lower is better)
Translates to: IPQSYYCLSQYA*QGRTPEEALEC
Trigger: ACATTCTAGGGCTTCTTCAGGGGTTCTACCCTGGCAAGCATATTGACTCAAACAGTAATATGACTGTGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp GTTTTGTTATGCTTTAGTTTGAAGGGACAACGAGATTaGGTTCCCAAAGCTGAAGCTGCTAAGAGCCTTTGT +
Preference number: 3 (lower is better)
Translates to: VLLCFSLKGQRD*VPKAEAAKSLC
Trigger: ACAAAGGCTCTTAGCAGCTTCAGCTTTGGGAACCCAATCTCGTTGTCCCTTCAAACTAAAGCATAACAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp TGGCAAACTATTTCCAAGCAGTGTTCTCTACCAAATTaGAATGGGAACTTTAAAGATCCCAGTGACAGCAGC +
Preference number: 3 (lower is better)
Translates to: WQTISKQCSLPN*NGNFKDPSDSS
Trigger: GCTGCTGTCACTGGGATCTTTAAAGTTCCCATTCCAATTTGGTAGAGAACACTGCTTGGAAATAGTTTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CTGGCCACCTTACTAAGCAAAGATCATACACAGCTCTaGATACATAATTTATGTATCGGGTGTCAGAGTGTG +
Preference number: 3 (lower is better)
Translates to: LATLLSKDHTQL*IHNLCIGCQSV
Trigger: CACACTCTGACACCCGATACATAAATTATGTATCCAGAGCTGTGTATGATCTTTGCTTAGTAAGGTGGCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGAACAAATGTCTTTGGTTaGCAGTATTCTGCTTCTTTG +
Preference number: 3 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRTNVFG*QYSASL
Trigger: CAAAGAAGCAGAATACTGCAAACCAAAGACATTTGT...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCAAAATCGATTACCTTaGTACAGATCAATGACGCTA +
Preference number: 3 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKQNRLP*YRSMTL
Trigger: TAGCGTCATTGATCTGTACAAAGGTAATCGATTTTG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CAAACCACACTTGTAATGCACATAGGAGGACCTGGGTaGCTTGTAAATCAAGGGCACAGTAATGATCTAAAA +
Preference number: 3 (lower is better)
Translates to: QTTLVMHIGGPG*LVNQGHSNDLK
Trigger: TTTTAGATCATTACTGTGCCCTTGATTTACAAGTCACCCAGGTCCTCCTATGTGCATTACAAGTGTGGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TTTTTCCCCACAACTGTGGTCTCTGCGGTTAGCAAATaGCACAGAACTGTTAAACTCTTCAGCTTTGCAAAT +
Preference number: 3 (lower is better)
Translates to: FFPTTVVSAVSK*HRTVKLFSFAN
Trigger: ATTTGCAAAGCTGAAGAGTTTAACAGTTCTGTGTCATTTGCTAACCGCAGAGACCACAGTTGTGGGGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp GTGATGTTGCTTATGGGGAATTACCCTGCTGCTTGGTaGATTTATGTTCTCCCAGGTATTCTGGGAATTTTT +
Preference number: 3 (lower is better)
Translates to: VMLLMGNYPAAW*IYVLPGILGIF
Trigger: AAAAATTCCCAGAATACCTGGGAGAACATAAATTCACCAAGCAGCAGGGTAATTCCCCATAAGCAACATCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTaGTTTCAAGTCACCAGTGAAGGGCCCCAGCTAAGA +
Preference number: 3 (lower is better)
Translates to: MITARLEVSREL*FQVTSEGPQLR
Trigger: TCTTAGCTGGGGCCCTTCACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp AAAACAAAAAGGACTACATTACAAAGCTGCCATCACTaGAGCCTACTTATAAGGCCGTTCCTTCTCGTTATC +
Preference number: 3 (lower is better)
Translates to: KTKRTTLQSCHH*SLLIRPFLLVI
Trigger: GATAACGAGAAGGAACGGCCTTATAAGTAGGCTGCAGTGATGGCAGCTTTGTAATGTAGTCCTTTTTGTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp TGTATTCTCGTTTTGGGAAGTCCAGTGAGAGCCAAGTaGTTTATAATCTTTCATGATGAGCTAACTGCTGGA +
Preference number: 3 (lower is better)
Translates to: CILVLGSPVRAK*FIIFHDELTAG
Trigger: TCCAGCAGTTAGCTCATCATGAAAGATTATAAAGCACTTGGCTCTCACTGGACTTCCCAAAACGAGAATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp CTGGTGGATAATGGTATCTACTGGAAAATGGATTTCTaGTGTTTTGCTCCACAACAGATGGGAATGAATCAC +
Preference number: 3 (lower is better)
Translates to: LVDNGIYWKMDF*CFAPQQMGMNH
Trigger: GTGATTCATTCCCATCTGTTGTGGAGCAAAACACCAGAAATCCATTTTCCAGTAGATACCATTATCCACCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp ACGTGCTTGGAAACTAAGAGGGCAAAAGGAAGATCGTaGATCAGTGTTGGGGCTTATTTATCTACTTCTTTA +
Preference number: 3 (lower is better)
Translates to: TCLETKRAKGRS*ISVGAYLSTSL
Trigger: TAAAGAAGTAGATAAATAAGCCCCAACACTGATCCACGATCTTCCTTTTGCCCTCTTAGTTTCCAAGCACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAATGTGTTGTCCTCATTaGGAGATGACTTGTGCCCAG +
Preference number: 3 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPMCCPH*EMTCAQ
Trigger: CTGGGCACAAGTCATCTCCAAATGAGGACAACACAT...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTTGGTTGCACTCAAGCTaGTCAGTGCAAACTGGTAAT +
Preference number: 3 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPWLHSS*SVQTGN
Trigger: ATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCA...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR-3UTR CAA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTGGTTTTTGGTATGTGTaGTCCTCATTTGGAGATGAC +
Preference number: 3 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPGFWYV*SSFGDD
Trigger: GTCATCTCCAAATGAGGACAACACATACCAAAAACC...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp GTATTCTGGGAATTTTTATTGCCAATAGGAATTCGGTaGTCAACTGCTTGGAAAGAAGACCTTGCAGATTGG +
Preference number: 3 (lower is better)
Translates to: VFWEFLLPIGIR*STAWKEDLADW
Trigger: CCAATCTGCAAGGTCTTCTTTCCAAGCAGTTGATCACCGAATTCCTATTGGCAATAAAAATTCCCAGAATAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp AAAGACATTTATCAAGAGTTCCTAGAGGGGATTTCTTaGCTTTTTCCTTCATGCCATCATCTTCCAAGGATG +
Preference number: 3 (lower is better)
Translates to: KDIYQEFLEGIS*LFPSCHHLPRM
Trigger: CATCCTTGGAAGATGATGGCATGAAGGAAAAAGGCAAGAAATCCCCTCTAGGAACTCTTGATAAATGTCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp GGAATTTTTATTGCCAATAGGAATTCGGTGATCAACTaGTTGGAAAGAAGACCTTGCAGATTGGCCTTGATA +
Preference number: 3 (lower is better)
Translates to: GIFIANRNSVIN*LERRPCRLALI
Trigger: TATCAAGGCCAATCTGCAAGGTCTTCTTTCCAAGCAGTTGATCACCGAATTCCTATTGGCAATAAAAATTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR GCA 72 bp GTAGGTATTACCATATCTTCATCAAGAGGAACCGTTTaGGGGCTTGTAAGTATAAGAGGAGAACTTAATGCA +
Preference number: 3 (lower is better)
Translates to: VGITISSSRGTV*GLVSIRGELNA
Trigger: TGCATTAAGTTCTCCTCTTATACTTACAAGCCCGCAAACGGTTCCTCTTGATGAAGATATGGTAATACCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp CCAACTTGGGTGACTTTTCTCATCATAATACAAACCTaGTTCGATCTGACTCATGTTGAAATCCCAACAGAT +
Preference number: 3 (lower is better)
Translates to: PTWVTFLIIIQT*FDLTHVEIPTD
Trigger: ATCTGTTGGGATTTCAACATGAGTCAGATCGAATCAGGTTTGTATTATGATGAGAAAAGTCACCCAAGTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CCA 72 bp AATGGGAGCAAGCCTCTGAGGAAATACGCTTTTTCTTaGTCATTTGACCATAAGTTCATGGATTATAAGCAA +
Preference number: 3 (lower is better)
Translates to: NGSKPLRKYAFS*SFDHKFMDYKQ
Trigger: TTGCTTATAATCCATGAACTTATGGTCAAATGACCAAGAAAAAGCGTATTTCCTCAGAGGCTTGCTCCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp AGATCTGTATACATTCAAGCTCACAGACTGTATAAATaGCAGGCAAACTTATCTAACAAGGACAAGGTCTAT +
Preference number: 3 (lower is better)
Translates to: RSVYIQAHRLYK*QANLSNKDKVY
Trigger: ATAGACCTTGTCCTTGTTAGATAAGTTTGCCTGTCATTTATACAGTCTGTGAGCTTGAATGTATACAGATCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR TCA 72 bp TTTTCTTTCAGCTACCTAGCAAAACGATACTTTGTATaGCCTGAAATTTGGATACATATGTGTACAGATGCA +
Preference number: 3 (lower is better)
Translates to: FSFSYLAKRYFV*PEIWIHMCTDA
Trigger: TGCATCTGTACACATATGTATCCAAATTTCAGGTCATACAAAGTATCGTTTTGCTAGGTAGCTGAAAGAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTTGGCCGCAGGCGGGGTaGCCAGGCCTCGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCWPQAG*PGLGTG
Trigger: ACCTGTCCCGAGGCCTGGGCACCCCGCCTGCGGCCA...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCCGCGTGGTGGGGGCTaGGGCTGGCCAGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRPRGGG*GWPAAP
Trigger: AGGAGCTGCTGGCCAGCCCCAGCCCCCACCACGCGG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCCAGCTGCCCGGACGTaGCCACCTGAGAACCCGAGG +
Preference number: 4 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYPAART*PPENPR
Trigger: CCTCGGGTTCTCAGGTGGCCACGTCCGGGCAGCTGG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp CTCCAGGTTAGCAGCCGCCTTCGTCCGCACACATCGTaGTTGTTTCTTTGGGGGAGTCTGAGCTGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: LQVSSRLRPHTS*LFLWGSLSCGC
Trigger: ACAGCCACAGCTCAGACTCCCCCAAAGAAACAACAACGATGTGTGCGGACGAAGGCGGCTGCTAACCTGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTCGAGGCCATACTGGTaGCCATGGCCGAGCGCGACG +
Preference number: 4 (lower is better)
Translates to: SELQNLVADWVLRGAYWYSRPYW*PWPSAT
Trigger: CGTCGCGCTCGGCCATGGTCACCAGTATGGCCTCGA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTACTGGCCCGTGGGACTaGGTGTGGCCAGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCTGPWD*VWPGWC
Trigger: ACACCACCCTGGCCACACTCAGTCCCACGGGCCAGT...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCCGGACGTGGCCACCTaGGAACCCGAGGAGGACGAA +
Preference number: 4 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYPDVAT*EPEEDE
Trigger: TTCGTCCTCCTCGGGTTCTCAGGTGGCCACGTCCGG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACCCGCCGACCGGCCCGTaGAAAGTGCCCAGACTTTCC +
Preference number: 4 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYPPTGP*KVPRLS
Trigger: GGAAAGTCTGGGCACTTTGCACGGGCCGGTCGGCGG...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATGACCGTAGAGATGGGTaGCAGCGGCTGGAGCGGCGT +
Preference number: 4 (lower is better)
Translates to: SELQNLVADWVLRGAYWYDRRDG*QRLERR
Trigger: ACGCCGCTCCAGCCGCTGCCACCCATCTCTACGGTC...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCGTTGCCCAGCGGCGTaGCAGCCAATGGAGACAGGC +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCRCPAA*QPMETG
Trigger: GCCTGTCTCCATTGGCTGCCACGCCGCTGGGCAACG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCACCGCGGGTCAGCATaGCAGTGTGGTGCGCGTCGA +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCHRGSA*QCGARR
Trigger: TCGACGCGCACCACACTGCCATGCTGACCCGCGGTG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp ACCAGGGCTGGCGTGGCGAAGTCACTGCCCGGATATTaGGCTAATGTCATTGATGTAGCTGGTCTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: TRAGVAKSLPGY*ANVIDVAGLLS
Trigger: GCTGAGCAGACCAGCTACATCAATGACATTAGCCAAATATCCGGGCAGTGACTTCGCCACGCCAGCCCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGCGGGATGGAGAGCTCTaGTCGGTAGTCGCTGCCGTC +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRRDGEL*SVVAAV
Trigger: GACGGCAGCGACTACCGACCAGAGCTCTCCATCCCG...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTCCGGCGGACCGTAGTTaGGCAGGCTCTGCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCPADRS*AGSAEH
Trigger: ATGCTCAGCAGAGCCTGCCCAACTACGGTCCGCCGG...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGCTAGGAGCCAGCACTaGCCCGTGGGACTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCARSQH*PVGLSV
Trigger: CACACTCAGTCCCACGGGCCAGTGCTGGCTCCTAGC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGCGGTGCCCAGCTCCTaGTGCGCGGTTGGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPAVPSS*CAVGGG
Trigger: GCCGCCGCCAACCGCGCATCAGGAGCTGGGCACCGC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGATGTTGCTCATGCCCATaGCTGGCGGCGACGAGTCGC +
Preference number: 4 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRCCSCP*LAATSR
Trigger: GCGACTCGTCGCCGCCAGGCATGGGCATGAGCAACA...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTTGTAGGTGTTGCTCATaGCCATGCCTGGCGGCGACG +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCCRCCS*PCLAAT
Trigger: CGTCGCCGCCAGGCATGGGCATGAGCAACACCTACA...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGGCGTAAGGCAGACATaGGCTGGAACTCGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCGVRQT*AGTRAP
Trigger: AGGAGCCCGAGTTCCAGCGCATGTCTGCCTTACGCC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TCAGTCTCAAGTGTCTGTAAAGAGTCATCGAAGCTTTaGGCTTGCTCCGAACACCCCTTGGTGCCCACCTGG +
Preference number: 4 (lower is better)
Translates to: SVSSVCKESSKL*ACSEHPLVPTW
Trigger: CCAGGTGGGCACCAAGGGGTGTTCGGAGCAAGCCAAAAGCTTCGATGACTCTTTACAGACACTTGAGACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGGCCACCCAGCCCGTTaGCCAGCGGCGTGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPGHPAR*PAAWQP
Trigger: TGGCTGCCACGCCGCTGGGCAACGGGCTGGGTGGCC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGTCAGCATGGCAGTGTaGTGCGCGTCGAAATTGGGG +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCVSMAV*CASKLG
Trigger: CCCCAATTTCGACGCGCACCACACTGCCATGCTGAC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGTGGTGTAAGCCATTaGGGTGAGACATCATGGCCG +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRGGVSH*GETSWP
Trigger: CGGCCATGATGTCTCACCTCAATGGCTTACACCACC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTCTGGCCAGCAGCTCCTaGTCATGGCCCGGGCCCCCG +
Preference number: 4 (lower is better)
Translates to: MITARLEVSRELCFQVTSLASSS*SWPGPP
Trigger: CGGGGGCCCGGGCCATGAGCAGGAGCTGCTGGCCAG...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGAAGCATGGCAGTGTGGTaGGCGTCGAAATTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRSMAVW*ASKLGL
Trigger: CAGCCCCAATTTCGACGCGCACCACACTGCCATGCT...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGACATACTCATGGCGTaGTGTAGCGGGATGGAGAGC +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRDILMA*CSGMES
Trigger: GCTCTCCATCCCGCTACACCACGCCATGAGTATGTC...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACAAGAGTGTTCGGCGTTaGAGGTCCGTGAACACCAGG +
Preference number: 4 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYKSVRR*RSVNTR
Trigger: CCTGGTGTTCACGGACCTCCAACGCCGAACACTCTT...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp GATCGACCCCAGTGCCAGCTATGGTTGCACTCAAGCTaGTCAGTGCAAACTGGTAATTACTACCTCGAGGAG +
Preference number: 4 (lower is better)
Translates to: DRPQCQLWLHSS*SVQTGNYYLEE
Trigger: CTCCTCGAGGTAGTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp GGAGTCAAGATGGAAGAAAGTCCTTGCGTAAAGGACTaGGAGACACAAGACCACCAAGTTCCCACCATGCCC +
Preference number: 4 (lower is better)
Translates to: GVKMEESPCVKD*ETQDHQVPTMP
Trigger: GGGCATGGTGGGAACTTGGTGGTCTTGTGTCTCCAAGTCCTTTACGCAAGGACTTTCTTCCATCTTGACTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGCCGGCCCGTGCAAAGTaGCCAGACTTTCCATTGTCA +
Preference number: 4 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKPARAK*PDFPLS
Trigger: TGACAATGGAAAGTCTGGGCACTTTGCACGGGCCGG...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTGGGAAATGGTGATCTaGATCTCCTTCGAAGGGCGC +
Preference number: 4 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYWEMVI*ISFEGR
Trigger: GCGCCCTTCGAAGGAGATGCAGATCACCATTTCCCA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGTACAAGTGCTGGAGGTaGATGAAGAACCCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRYKCWR*MKNPLC
Trigger: GCACAGGGGGTTCTTCATCCACCTCCAGCACTTGTA...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TCTTCTTGGCAAATTCTAGTGAGCCAGATCCCAGGCTaGCTTGTTGTAAAAAGGGGCTGGGCATGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: SSWQILVSQIPG*LVVKRGWACSC
Trigger: ACAGGAGCATGCCCAGCCCCTTTTTACAACAAGCAAGCCTGGGATCTGGCTCACTAGAATTTGCCAAGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp ATGCAGACCGCACAGAGAAAGGAATCTTTGGTATCTTTGGTGTCGTCAACACGACTTCTAGGTCTTTGGTaGGGCATCGATAGGCGGTGT +
Preference number: 4 (lower is better)
Translates to: MQTAQRKESLVSLVSSTRLLGLW*GIDRRC
Trigger: ACACCGCCTATCGATGCCTCACCAAAGACCTAGAAG...TCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTCCTCGGGACAGGTGTTaGTCACCGCGGGTCAGCATG +
Preference number: 4 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPPRDRC*SPRVSM
Trigger: CATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGG...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGCTCATGCCCATGCCTaGCGGCGACGAGTCGCAGGA +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPAHAHA*RRRVAG
Trigger: TCCTGCGACTCGTCGCCGCCAGGCATGGGCATGAGC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TTCAACAATCCCGATCGACCCCAGTGCCAGCTATGGTaGCACTCAAGCTTGTCAGTGCAAACTGGTAATTAC +
Preference number: 4 (lower is better)
Translates to: FNNPDRPQCQLW*HSSLSVQTGNY
Trigger: GTAATTACCAGTTTGCACTGACAAGCTTGAGTGCAACCATAGCTGGCACTGGGGTCGATCGGGATTGTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGCTTCAGCTCGGCGGTaGTACGCTGGGCCACCTCTT +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPASARR*YAGPPL
Trigger: AAGAGGTGGCCCAGCGTATCACCGCCGAGCTGAAGC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGGCGCTTATTTTCCTTaGAGATGGCGAAGAGTGTTC +
Preference number: 4 (lower is better)
Translates to: THTHTQLANTTSTRPHLCGAYFP*RWRRVF
Trigger: GAACACTCTTCGCCATCTTCAAGGAAAATAAGCGCC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTCTGGTCGGTAGTCGCTaGCGTCCAAGATCGAGGCCA +
Preference number: 4 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPLVGSR*RPRSRP
Trigger: TGGCCTCGATCTTGGACGGCAGCGACTACCGACCAG...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCATCGGAGAGAGTCCCCTaGGACCGGCATAGAACCCTC +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPSERVP*DRHRTL
Trigger: GAGGGTTCTATGCCGGTCTCAGGGGACTCTCTCCGA...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGGCGTTGGAGGTCCGTaGACACCAGGCGGGATTTCT +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPGVGGP*TPGGIS
Trigger: AGAAATCCCGCCTGGTGTTCACGGACCTCCAACGCC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp TCCTCATCTCCATTCTCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGATGCTTTGGTACAAGTaGTGGAGGTGGATGAAGAAC +
Preference number: 4 (lower is better)
Translates to: SSSPFSELQNLVADWVLRMLWYK*WRWMKN
Trigger: GTTCTTCATCCACCTCCAGCACTTGTACCAAAGCAT...CCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGAGAATGGAGATGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp CCTGTGTCTATACTCAGGCCAAATATCCACTATGACTaGCAGGAAACTAGTGTTAGCAAGAGGTTGACAGGG +
Preference number: 4 (lower is better)
Translates to: PVSILRPNIHYD*QETSVSKRLTG
Trigger: CCCTGTCAACCTCTTGCTAACACTAGTTTCCTGCAAGTCATAGTGGATATTTGGCCTGAGTATAGACACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TATCTTTCACTTCCCTGTGGCTGTTATGAGAGTAACTaGAGGTCAATGGGCACTTCAGGACCTGTGGACTTA +
Preference number: 4 (lower is better)
Translates to: YLSLPCGCYESN*RSMGTSGPVDL
Trigger: TAAGTCCACAGGTCCTGAAGTGCCCATTGACCTCAAGTTACTCTCATAACAGCCACAGGGAAGTGAAAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TCTATAGTGATATATCTGGGTTATGAGGCTCCAGAGTaGTGGGGTTCTAGTGGGCTAATTCCAACTTGGGTG +
Preference number: 4 (lower is better)
Translates to: SIVIYLGYEAPE*WGSSGLIPTWV
Trigger: CACCCAAGTTGGAATTAGCCCACTAGAACCCCACAACTCTGGAGCCTCATAACCCAGATATATCACTATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCATGTAAGCCATTGAGGTaGGACATCATGGCCGCAGGC +
Preference number: 4 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPCKPLR*DIMAAG
Trigger: GCCTGCGGCCATGATGTCTCACCTCAATGGCTTACA...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTTGTAAAGGTTGTTCATaGACGGAAGCCCGCGCTCGT +
Preference number: 4 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPCKGCS*TEARAR
Trigger: ACGAGCGCGGGCTTCCGTCCATGAACAACCTTTACA...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp ATCTATGAGGTATATCTGAGAAAATTCGGTAAGGAATaGCGCGGTCTGCATTGCCAACATGCCCAGGTTCAT +
Preference number: 4 (lower is better)
Translates to: IYEVYLRKFGKE*RGLHCQHAQVH
Trigger: ATGAACCTGGGCATGTTGGCAATGCAGACCGCGCAATTCCTTACCGAATTTTCTCAGATATACCTCATAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTGTGGTGGAACTTGTCTaGGACCGTAGAGATGGGTGG +
Preference number: 4 (lower is better)
Translates to: MITARLEVSRELCFQVTSVVELV*DRRDGW
Trigger: CCACCCATCTCTACGGTCTCAGACAAGTTCCACCAC...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CCA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTTCAGCTCCGGGTTCATaGCGCAGCCTTCTAGGTCTT +
Preference number: 4 (lower is better)
Translates to: MITARLEVSRELCFQVTSSAPGS*RSLLGL
Trigger: AAGACCTAGAAGGCTGCGCCATGAACCCGGAGCTGA...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp CCTATGATTACAGCTAGATTAGAAGTTTCAAGAGAATaGTGCTTTCAAGTCACCAGTGAAGGGCCCCAGCTA +
Preference number: 4 (lower is better)
Translates to: PMITARLEVSRE*CFQVTSEGPQL
Trigger: TAGCTGGGGCCCTTCACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCATAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TTGTCATATGAAGCAGCAGCCATTGAGGCTCGTCTGTaGATTTGTGTCTCAACCCTTTCTTTCAAATCTGCT +
Preference number: 4 (lower is better)
Translates to: LSYEAAAIEARL*ICVSTLSFKSA
Trigger: AGCAGATTTGAAAGAAAGGGTTGAGACACAAATCAACAGACGAGCCTCAATGGCTGCTGCTTCATATGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TCTGCAGTCTGTACTCAAGCAGAACCACCCATTCCATaGTCCACAAGTCACAAAGACTCATTTAGTAAGATC +
Preference number: 4 (lower is better)
Translates to: SAVCTQAEPPIP*STSHKDSFSKI
Trigger: GATCTTACTAAATGAGTCTTTGTGACTTGTGGACAATGGAATGGGTGGTTCTGCTTGAGTACAGACTGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp TGTAAGCTCACCACTAAGCACATAGAGGCAGAAGGATaGGGAGTTCAAAGCCATCTTCTACACAATGAGTTT +
Preference number: 4 (lower is better)
Translates to: CKLTTKHIEAEG*GVQSHLLHNEF
Trigger: AAACTCATTGTGTAGAAGATGGCTTTGAACTCCCAATCCTTCTGCCTCTATGTGCTTAGTGGTGAGCTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR GCA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTGTGCCTAGGTCATCTTaGCATTTCTCCAGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: MITARLEVSRELCFQVTSVPRSS*HFSRLR
Trigger: TCGCAGCCTGGAGAAATGGCAAGATGACCTAGGCAC...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp AAGACTGATGTAAACGGCCTTGTCAAACTGGATGCGTaGAAACCAGAGCCTTCCTTATTTCTGTATATCTTC +
Preference number: 4 (lower is better)
Translates to: KTDVNGLVKLDA*KPEPSLFLYIF
Trigger: GAAGATATACAGAAATAAGGAAGGCTCTGGTTTCAACGCATCCAGTTTGACAAGGCCGTTTACATCAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp ATTTTTATTGCCAATAGGAATTCGGTGATCAACTGCTaGGAAAGAAGACCTTGCAGATTGGCCTTGATAGGG +
Preference number: 4 (lower is better)
Translates to: IFIANRNSVINC*ERRPCRLALIG
Trigger: CCCTATCAAGGCCAATCTGCAAGGTCTTCTTTCCAAGCAGTTGATCACCGAATTCCTATTGGCAATAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp CCTTTGGTATTAGTACAAATCTTGTTCTTTGCAGGGTaGCATTGCAAAGCACCACAGTACAATAAGCCTACC +
Preference number: 4 (lower is better)
Translates to: PLVLVQILFFAG*HCKAPQYNKPT
Trigger: GGTAGGCTTATTGTACTGTGGTGCTTTGCAATGCAACCCTGCAAAGAACAAGATTTGTACTAATACCAAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp GACGTAGAGAAAGAACCTTTGGTATTAGTACAAATCTaGTTCTTTGCAGGGTTGCATTGCAAAGCACCACAG +
Preference number: 4 (lower is better)
Translates to: DVEKEPLVLVQI*FFAGLHCKAPQ
Trigger: CTGTGGTGCTTTGCAATGCAACCCTGCAAAGAACAAGATTTGTACTAATACCAAAGGTTCTTTCTCTACGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp AAAGGAAATATATTGGAACTTGTCTTCCCTTCTGTTTaGGTGGGAGCAGTAAGAATTCGCTGGGCAAGAAAG +
Preference number: 4 (lower is better)
Translates to: KGNILELVFPSV*VGAVRIRWARK
Trigger: CTTTCTTGCCCAGCGAATTCTTACTGCTCCCACCAAAACAGAAGGGAAGACAAGTTCCAATATATTTCCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR TCA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTGTTGCTGGGAAATGGTaGTCTGCATCTCCTTCGAAG +
Preference number: 4 (lower is better)
Translates to: MITARLEVSRELCFQVTSVAGKW*SASPSK
Trigger: CTTCGAAGGAGATGCAGATCACCATTTCCCAGCAAC...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp AGAAGCGAAATGCAGACCGCACAGAGAAAGGAATCTTaGGTATCTTTGGTGTCGTCAACACGATTAAAATTA +
Preference number: 4 (lower is better)
Translates to: RSEMQTAQRKES*VSLVSSTRLKL
Trigger: TAATTTTAATCGTGTTGACGACACCAAAGATACCAAAGATTCCTTTCTCTGTGCGGTCTGCATTTCGCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp GCATACGAGAAAACAAATAGTTGGACAACAAAAATTTaGGGTTGTCACCAATGCGGGTTAATCTATACGTGT +
Preference number: 4 (lower is better)
Translates to: AYEKTNSWTTKI*GCHQCGLIYTC
Trigger: ACACGTATAGATTAACCCGCATTGGTGACAACCCAAAATTTTTGTTGTCCAACTATTTGTTTTCTCGTATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp ATCCATAAACTACAGCTTCTTTTCACTGCTAAAGGATaGCTACTTTCCTACATTCAGATAACTACTCCAACC +
Preference number: 4 (lower is better)
Translates to: IHKLQLLFTAKG*LLSYIQITTPT
Trigger: GGTTGGAGTAGTTATCTGAATGTAGGAAAGTAGCAATCCTTTAGCAGTGAAAAGAAGCTGTAGTTTATGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
3UTR CAA 72 bp AATCACCTACCAAAAGTGAGAGTCAAGTATCCTGGCTaGATAAATATTGACTTTAGAATAGCCATGGTAATT +
Preference number: 4 (lower is better)
Translates to: NHLPKVRVKYPG*INIDFRIAMVI
Trigger: AATTACCATGGCTATTCTAAAGTCAATATTTATCAAGCCAGGATACTTGACTCTCACTTTTGGTAGGTGATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp CCGCCCCCGCCGCCTCCCCCGCCGCTGCCGCCGCCGACCGGCCCGTaGAAAGTGCCCAGACTTTCCATTGTCAGCTCCGGGTTCATGGCG +
Preference number: 5 (lower is better)
Translates to: PPPPPPPPLPPPTGP*KVPRLSIVSSGFMA
Trigger: CGCCATGAACCCGGAGCTGACAATGGAAAGTCTGGGCACTTTGCACGGGCCGGTCGGCGGCGGCAGCGGCGGGGGAGGCGGCGGGGGCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp GATCGAGGCCATACTGGTGACCATGGCCGAGCGCGACGCCGCGGCTaGCGCCGCCGCTGCGGTGCCCAGCTCCTGATGCGCGGTTGGCGG +
Preference number: 5 (lower is better)
Translates to: DRGHTGDHGRARRRG*RRRCGAQLLMRGWR
Trigger: CCGCCAACCGCGCATCAGGAGCTGGGCACCGCAGCGGCGGCGGCAGCCGCGGCGTCGCGCTCGGCCATGGTCACCAGTATGGCCTCGATC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS TCA 90 bp GCACTGGCCCGTGGGACTGAGTGTGGCCAGGGTGGTGTAAGCCATTaGGGTGAGACATCATGGCCGCAGGCGGGGTGCCCAGGCCTCGGG +
Preference number: 5 (lower is better)
Translates to: ALARGTECGQGGVSH*GETSWPQAGCPGLG
Trigger: CCCGAGGCCTGGGCACCCCGCCTGCGGCCATGATGTCTCACCTCAATGGCTTACACCACCCTGGCCACACTCAGTCCCACGGGCCAGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp GACATCATGGCCGCAGGCGGGGTGCCCAGGCCTCGGGACAGGTGTTaGTCACCGCGGGTCAGCATGGCAGTGTGGTGCGCGTCGAAATTG +
Preference number: 5 (lower is better)
Translates to: DIMAAGGVPRPRDRC*SPRVSMAVWCASKL
Trigger: CAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGCCTGGGCACCCCGCCTGCGGCCATGATGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp AGTTGGGCAGGCTCTGCTGAGCATTGTGAAGGCCACCCAGCCCGTTaGCCAGCGGCGTGGCAGCCAATGGAGACAGGCTCTGGCTCATAC +
Preference number: 5 (lower is better)
Translates to: SWAGSAEHCEGHPAR*PAAWQPMETGSGSY
Trigger: GTATGAGCCAGAGCCTGTCTCCATTGGCTGCCACGCCGCTGGGCAACGGGCTGGGTGGCCTTCACAATGCTCAGCAGAGCCTGCCCAACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp CCTCGGGACAGGTGTTGCTCACCGCGGGTCAGCATGGCAGTGTGGTaGGCGTCGAAATTGGGGCTGAGCATTTTGTCATGGCCCGGCGGA +
Preference number: 5 (lower is better)
Translates to: PRDRCCSPRVSMAVW*ASKLGLSILSWPGG
Trigger: TCCGCCGGGCCATGACAAAATGCTCAGCCCCAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 90 bp GCGGCGACGAGTCGCAGGACATACTCATGGCGTGGTGTAGCGGGATaGAGAGCTCTGGTCGGTAGTCGCTGCCGTCCAAGATCGAGGCCA +
Preference number: 5 (lower is better)
Translates to: AATSRRTYSWRGVAG*RALVGSRCRPRSRP
Trigger: TGGCCTCGATCTTGGACGGCAGCGACTACCGACCAGAGCTCTCCATCCCGCTACACCACGCCATGAGTATGTCCTGCGACTCGTCGCCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 90 bp TGCTCATGCCCATGCCTGGCGGCGACGAGTCGCAGGACATACTCATaGCGTGGTGTAGCGGGATGGAGAGCTCTGGTCGGTAGTCGCTGC +
Preference number: 5 (lower is better)
Translates to: CSCPCLAATSRRTYS*RGVAGWRALVGSRC
Trigger: GCAGCGACTACCGACCAGAGCTCTCCATCCCGCTACACCACGCCATGAGTATGTCCTGCGACTCGTCGCCGCCAGGCATGGGCATGAGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 90 bp AGGCCTCGGGACAGGTGTTGCTCACCGCGGGTCAGCATGGCAGTGTaGTGCGCGTCGAAATTGGGGCTGAGCATTTTGTCATGGCCCGGC +
Preference number: 5 (lower is better)
Translates to: RPRDRCCSPRVSMAV*CASKLGLSILSWPG
Trigger: GCCGGGCCATGACAAAATGCTCAGCCCCAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACGCCTCGGGACAGGTGTaGCTCACCGCGGGTCAGCAT +
Preference number: 5 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYASGQV*LTAGQH
Trigger: ATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGC...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp CAAGTGCTGGAGGTGGATGAAGAACCCCCTGTGCCTAGGTCATCTTaGCATTTCTCCAGGCTGCGACGCCGGGCATTCATGAAGAAGTTA +
Preference number: 5 (lower is better)
Translates to: QVLEVDEEPPVPRSS*HFSRLRRRAFMKKL
Trigger: TAACTTCTTCATGAATGCCCGGCGTCGCAGCCTGGAGAAATGGCAAGATGACCTAGGCACAGGGGGTTCTTCATCCACCTCCAGCACTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp AGAAAAGCACAGAGAGGTCCAGACTGGCTAAATCGTTGCTTTGGTTCAAGCAAGTTGGGGCTGAGCATTTaGTCATGGCCCGGCGGACCG +
Preference number: 5 (lower is better)
Translates to: RKAQRGPDWLNRCFGSSKLGLSI*SWPGGP
Trigger: CGGTCCGCCGGGCCATGACAAAATGCTCAGCCCCAA...CTTGCTTGAACCAAAGCAACGATTTAGCCAGTCTGGACCTCTCTGTGCTTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp ATGATTACAGCTAGATTAGAAGTTTCAAGAGAATTGTGCTTTCAAGTCACCAGTAGGCCACCCAGCCCGTaGCCCAGCGGCGTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: MITARLEVSRELCFQVTSRPPSP*PSGVAA
Trigger: GGCTGCCACGCCGCTGGGCAACGGGCTGGGTGGCCT...ACTGGTGACTTGAAAGCACAATTCTCTTGAAACTTCTAATCTAGCTGTAATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 90 bp AGTGTTCGGCGTTGGAGGTCCGTGAACACCAGGCGGGATTTCTTCTaGGAGTTGTTCCTGTCTTTGTTTGGTTCTTGCTCTTTGCGTTTG +
Preference number: 5 (lower is better)
Translates to: SVRRWRSVNTRRDFF*ELFLSLFGSCSLRL
Trigger: CAAACGCAAAGAGCAAGAACCAAACAAAGACAGGAACAACTCGCAGAAGAAATCCCGCCTGGTGTTCACGGACCTCCAACGCCGAACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTGCGGGTGGTGGAACTaGTCTGAGACCGTAGAGATG +
Preference number: 5 (lower is better)
Translates to: SELQNLVADWVLRGAYWYCGWWN*SETVEM
Trigger: CATCTCTACGGTCTCAGACAAGTTCCACCACCCGCA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTTGGTGCGCGTCGAAATaGGGGCTGAGCATTTTGTCA +
Preference number: 5 (lower is better)
Translates to: THTHTQLANTTSTRPHLCWCASK*GLSILS
Trigger: TGACAAAATGCTCAGCCCCAATTTCGACGCGCACCA...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp AGGGTCTCAGTGGTAGGAAGGCCAGAAAAGGTGATGTTGCTTATGGGGAATTACTCTTGCTCTTTGCGTTaGCATGCTGCCAGGCGTAAG +
Preference number: 5 (lower is better)
Translates to: RVSVVGRPEKVMLLMGNYSCSLR*HAARRK
Trigger: CTTACGCCTGGCAGCATGCAAACGCAAAGAGCAAGA...GTAATTCCCCATAAGCAACATCACCTTTTCTGGCCTTCCTACCACTGAGACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp TCAGAACTGCAGAACCTGGTAGCTGATTGGGTTTTACGGGGAGCATACTGGTATTTTGGTTCTTGCTCTTaGCGTTTGCATGCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: SELQNLVADWVLRGAYWYFGSCS*RLHAAR
Trigger: CCTGGCAGCATGCAAACGCAAAGAGCAAGAACCAAA...ATACCAGTATGCTCCCCGTAAAACCCAATCAGCTACCAGGTTCTGCAGTTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp ACACACACACACACCCAACTAGCTAACACAACCTCCACAAGACCACACCTTTGTGTCTTTGTTTGGTTCTaGCTCTTTGCGTTTGCATGC +
Preference number: 5 (lower is better)
Translates to: THTHTQLANTTSTRPHLCVFVWF*LFAFAC
Trigger: GCATGCAAACGCAAAGAGCAAGAACCAAACAAAGAC...ACAAAGGTGTGGTCTTGTGGAGGTTGTGTTAGCTAGTTGGGTGTGTGTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTGAAGAGTGTTCGGCGTaGGAGGTCCGTGAACACCAG +
Preference number: 5 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPEECSA*EVREHQ
Trigger: CTGGTGTTCACGGACCTCCAACGCCGAACACTCTTC...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCATGCCCAGACTTTCCATaGTCAGCTCCGGGTTCATGG +
Preference number: 5 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPCPDFP*SAPGSW
Trigger: CCATGAACCCGGAGCTGACAATGGAAAGTCTGGGCA...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp AAATTCTTCTGTAGTGTTTTGGAATCCTGTGTCTATACTCAGGCCAAATATCCAGGGCGCTTATTTTCCTaGAAGATGGCGAAGAGTGTT +
Preference number: 5 (lower is better)
Translates to: KFFCSVLESCVYTQAKYPGRLFS*KMAKSV
Trigger: AACACTCTTCGCCATCTTCAAGGAAAATAAGCGCCC...TGGATATTTGGCCTGAGTATAGACACAGGATTCCAAAACACTACAGAAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS-3UTR CAA 90 bp CTGAGAGGAAAAAGAAAAGACATATTGTCTGAAGACAGGGATAGAAAGCAACCTTGTTCCTGTCTTTGTTaGGTTCTTGCTCTTTGCGTT +
Preference number: 5 (lower is better)
Translates to: LRGKRKDILSEDRDRKQPCSCLC*VLALCV
Trigger: AACGCAAAGAGCAAGAACCAAACAAAGACAGGAACA...AGGTTGCTTTCTATCCCTGTCTTCAGACAATATGTCTTTTCTTTTTCCTCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp CATACTGGTGACCATGGCCGAGCGCGACGCCGCGGCTaGCGCCGCCGCTGCGGTGCCCAGCTCCTGATGCGC +
Preference number: 6 (lower is better)
Translates to: HTGDHGRARRRG*RRRCGAQLLMR
Trigger: GCGCATCAGGAGCTGGGCACCGCAGCGGCGGCGGCAGCCGCGGCGTCGCGCTCGGCCATGGTCACCAGTATG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp GCCGCAGGCGGGGTGCCCAGGCCTCGGGACAGGTGTTaGTCACCGCGGGTCAGCATGGCAGTGTGGTGCGCG +
Preference number: 6 (lower is better)
Translates to: AAGGVPRPRDRC*SPRVSMAVWCA
Trigger: CGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGCCTGGGCACCCCGCCTGCGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 72 bp GGCCGCAGGCGGGGTGCCCAGGCCTCGGGACAGGTGTaGCTCACCGCGGGTCAGCATGGCAGTGTGGTGCGC +
Preference number: 6 (lower is better)
Translates to: GRRRGAQASGQV*LTAGQHGSVVR
Trigger: GCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGCCTGGGCACCCCGCCTGCGGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS TCA 72 bp GGTAGTCGCTGCCGTCCAAGATCGAGGCCATACTGGTaGCCATGGCCGAGCGCGACGCCGCGGCTGCCGCCG +
Preference number: 6 (lower is better)
Translates to: GSRCRPRSRPYW*PWPSATPRLPP
Trigger: CGGCGGCAGCCGCGGCGTCGCGCTCGGCCATGGTCACCAGTATGGCCTCGATCTTGGACGGCAGCGACTACC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS TCA 72 bp GTGTTGATCTCTTCCAGCTGCCCGGACGTGGCCACCTaGGAACCCGAGGAGGACGAAGGGGGCCGCTCACGG +
Preference number: 6 (lower is better)
Translates to: VLISSSCPDVAT*EPEEDEGGRSR
Trigger: CCGTGAGCGGCCCCCTTCGTCCTCCTCGGGTTCTCAGGTGGCCACGTCCGGGCAGCTGGAAGAGATCAACAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 90 bp AGACATCATGGCCGCAGGCGGGGTGCCCAGGCCTCGGGACAGGTGTaGCTCACCGCGGGTCAGCATGGCAGTGTGGTGCGCGTCGAAATT +
Preference number: 6 (lower is better)
Translates to: RHHGRRRGAQASGQV*LTAGQHGSVVRVEI
Trigger: AATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTCCCGAGGCCTGGGCACCCCGCCTGCGGCCATGATGTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp GGCTCTGCTGAGCATTGTGAAGGCCACCCAGCCCGTTaGCCAGCGGCGTGGCAGCCAATGGAGACAGGCTCT +
Preference number: 6 (lower is better)
Translates to: GSAEHCEGHPAR*PAAWQPMETGS
Trigger: AGAGCCTGTCTCCATTGGCTGCCACGCCGCTGGGCAACGGGCTGGGTGGCCTTCACAATGCTCAGCAGAGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 72 bp CCGCGGGTCAGCATGGCAGTGTGGTGCGCGTCGAAATaGGGGCTGAGCATTTTGTCATGGCCCGGCGGACCG +
Preference number: 6 (lower is better)
Translates to: PRVSMAVWCASK*GLSILSWPGGP
Trigger: CGGTCCGCCGGGCCATGACAAAATGCTCAGCCCCAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 72 bp CCATGCCTGGCGGCGACGAGTCGCAGGACATACTCATaGCGTGGTGTAGCGGGATGGAGAGCTCTGGTCGGT +
Preference number: 6 (lower is better)
Translates to: PCLAATSRRTYS*RGVAGWRALVG
Trigger: ACCGACCAGAGCTCTCCATCCCGCTACACCACGCCATGAGTATGTCCTGCGACTCGTCGCCGCCAGGCATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 72 bp CGCCGACCGGCCCGTGCAAAGTGCCCAGACTTTCCATaGTCAGCTCCGGGTTCATGGCGCAGCCTTCTAGGT +
Preference number: 6 (lower is better)
Translates to: RRPARAKCPDFP*SAPGSWRSLLG
Trigger: ACCTAGAAGGCTGCGCCATGAACCCGGAGCTGACAATGGAAAGTCTGGGCACTTTGCACGGGCCGGTCGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 72 bp CGTCAGCGTAGTGTAGGTGTTGCTCATGCCCATGCCTaGCGGCGACGAGTCGCAGGACATACTCATGGCGTG +
Preference number: 6 (lower is better)
Translates to: RQRSVGVAHAHA*RRRVAGHTHGV
Trigger: CACGCCATGAGTATGTCCTGCGACTCGTCGCCGCCAGGCATGGGCATGAGCAACACCTACACTACGCTGACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 72 bp AGTCGCAGGACATACTCATGGCGTGGTGTAGCGGGATaGAGAGCTCTGGTCGGTAGTCGCTGCCGTCCAAGA +
Preference number: 6 (lower is better)
Translates to: SRRTYSWRGVAG*RALVGSRCRPR
Trigger: TCTTGGACGGCAGCGACTACCGACCAGAGCTCTCCATCCCGCTACACCACGCCATGAGTATGTCCTGCGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp AGGTGTTGCTCACCGCGGGTCAGCATGGCAGTGTGGTaGGCGTCGAAATTGGGGCTGAGCATTTTGTCATGG +
Preference number: 6 (lower is better)
Translates to: RCCSPRVSMAVW*ASKLGLSILSW
Trigger: CCATGACAAAATGCTCAGCCCCAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp GAGGTGGATGAAGAACCCCCTGTGCCTAGGTCATCTTaGCATTTCTCCAGGCTGCGACGCCGGGCATTCATG +
Preference number: 6 (lower is better)
Translates to: EVDEEPPVPRSS*HFSRLRRRAFM
Trigger: CATGAATGCCCGGCGTCGCAGCCTGGAGAAATGGCAAGATGACCTAGGCACAGGGGGTTCTTCATCCACCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CCA 72 bp GACAGGTGTTGCTCACCGCGGGTCAGCATGGCAGTGTaGTGCGCGTCGAAATTGGGGCTGAGCATTTTGTCA +
Preference number: 6 (lower is better)
Translates to: DRCCSPRVSMAV*CASKLGLSILS
Trigger: TGACAAAATGCTCAGCCCCAATTTCGACGCGCACCACACTGCCATGCTGACCCGCGGTGAGCAACACCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp TGGTACAAGTGCTGGAGGTGGATGAAGAACCCCCTGTaGCTAGGTCATCTTGCCATTTCTCCAGGCTGCGAC +
Preference number: 6 (lower is better)
Translates to: WYKCWRWMKNPL*LGHLAISPGCD
Trigger: GTCGCAGCCTGGAGAAATGGCAAGATGACCTAGGCACAGGGGGTTCTTCATCCACCTCCAGCACTTGTACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 90 bp TCCGTGAACACCAGGCGGGATTTCTTCTGCGAGTTGTTCCTGTCTTaGTTTGGTTCTTGCTCTTTGCGTTTGCATGCTGCCAGGCGTAAG +
Preference number: 6 (lower is better)
Translates to: SVNTRRDFFCELFLS*FGSCSLRLHAARRK
Trigger: CTTACGCCTGGCAGCATGCAAACGCAAAGAGCAAGAACCAAACAAAGACAGGAACAACTCGCAGAAGAAATCCCGCCTGGTGTTCACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp CGTTGGAGGTCCGTGAACACCAGGCGGGATTTCTTCTaGGAGTTGTTCCTGTCTTTGTTTGGTTCTTGCTCT +
Preference number: 6 (lower is better)
Translates to: RWRSVNTRRDFF*ELFLSLFGSCS
Trigger: AGAGCAAGAACCAAACAAAGACAGGAACAACTCGCAGAAGAAATCCCGCCTGGTGTTCACGGACCTCCAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 72 bp GGCGGGATTTCTTCTGCGAGTTGTTCCTGTCTTTGTTaGGTTCTTGCTCTTTGCGTTTGCATGCTGCCAGGC +
Preference number: 6 (lower is better)
Translates to: GGISSASCSCLC*VLALCVCMLPG
Trigger: GCCTGGCAGCATGCAAACGCAAAGAGCAAGAACCAAACAAAGACAGGAACAACTCGCAGAAGAAATCCCGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS CAA 72 bp TGCGAGTTGTTCCTGTCTTTGTTTGGTTCTTGCTCTTaGCGTTTGCATGCTGCCAGGCGTAAGGCAGACATG +
Preference number: 6 (lower is better)
Translates to: CELFLSLFGSCS*RLHAARRKADM
Trigger: CATGTCTGCCTTACGCCTGGCAGCATGCAAACGCAAAGAGCAAGAACCAAACAAAGACAGGAACAACTCGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10
CDS GCA 72 bp TTCTTCTGCGAGTTGTTCCTGTCTTTGTTTGGTTCTTaGTCTTTGCGTTTGCATGCTGCCAGGCGTAAGGCA +
Preference number: 6 (lower is better)
Translates to: FFCELFLSLFGS*SLRLHAARRKA
Trigger: TGCCTTACGCCTGGCAGCATGCAAACGCAAAGAGCAAGAACCAAACAAAGACAGGAACAACTCGCAGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175965.10