Pregenerated sensors for OMT2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066463Ensembl transcript IDs: ENSMUST00000113376.10, ENSMUST00000166056.9, ENSMUST00000173321.2
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGCCCTCAGGCTCACAGCTGAAATGCACAATCGGTGAGCCCAAGTaGTGGACCAGGGATCCATTGGATAGAATCCGTTCCTCTAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: WPSGSQLKCTIGEPK*WTRDPLDRIRSSRE Trigger: CTCTCTAGAGGAACGGATTCTATCCAATGGATCCCTGGTCCATCACTTGGGCTCACCGATTGTGCATTTCAGCTGTGAGCCTGAGGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173321.2 |
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| 3UTR CAA 90 bp | GGCGTCCTCTTAAATGAAGTACCTCCGGTTCCACCACACAGGGCTTaGCAGGCCTCTGGCCCAGGCTCTGGCTGGGTAGGTAAACATTTT | + |
|
Preference number: 2 (lower is better) Translates to: GVLLNEVPPVPPHRA*QASGPGSGWVGKHF Trigger: AAAATGTTTACCTACCCAGCCAGAGCCTGGGCCAGAGGCCTGCAAAGCCCTGTGTGGTGGAACCGGAGGTACTTCATTTAAGAGGACGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173321.2 |
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| 3UTR CCA 72 bp | CTGTCCTGGCACAAAAAGATCTGGAACTTGGCATCATaGTCAAGCCGGCTTCTCCACAGGCAAGGCTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: LSWHKKIWNLAS*SSRLLHRQGCS Trigger: GGAACAGCCTTGCCTGTGGAGAAGCCGGCTTGACCATGATGCCAAGTTCCAGATCTTTTTGTGCCAGGACAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 ENSMUST00000173321.2 |
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| 3UTR CAA 72 bp | TTAAATGAAGTACCTCCGGTTCCACCACACAGGGCTTaGCAGGCCTCTGGCCCAGGCTCTGGCTGGGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: LNEVPPVPPHRA*QASGPGSGWVG Trigger: ACCTACCCAGCCAGAGCCTGGGCCAGAGGCCTGCAAAGCCCTGTGTGGTGGAACCGGAGGTACTTCATTTAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173321.2 |
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| CDS-3UTR CCA 90 bp | TTGGCATCATGGTCAAGCCGGCTTCTCCACAGGCAAGGCTGTTCCAAGGTTAACAAGAATCGAATATGTTaGAGGGTTGCAGGGCATGAG | + |
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Preference number: 4 (lower is better) Translates to: LASWSSRLLHRQGCSKVNKNRIC*RVAGHE Trigger: CTCATGCCCTGCAACCCTCCAACATATTCGATTCTT...GTTAACCTTGGAACAGCCTTGCCTGTGGAGAAGCCGGCTTGACCATGATGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113376.10 |
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| CDS-3UTR CAA 90 bp | CATGGTCAAGCCGGCTTCTCCACAGGCAAGGCTGTTCCAAGGTTAACATTATGGGAATATGTTGGAGGGTaGCAGGGCATGAGTACGCCT | + |
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Preference number: 5 (lower is better) Translates to: HGQAGFSTGKAVPRLTLWEYVGG*QGMSTP Trigger: AGGCGTACTCATGCCCTGCAACCCTCCAACATATTC...CCATAATGTTAACCTTGGAACAGCCTTGCCTGTGGAGAAGCCGGCTTGACCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113376.10 |
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| CDS GCA 90 bp | GGCCTCTGGCCCAGGCTCTGGCTCGATTTCGCTTGGTCCGGAGATTaGAAGCTAGCGACACAATCACAAACATTGCAAACATTGCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: GLWPRLWLDFAWSGD*KLATQSQTLQTLQK Trigger: TTTTTGCAATGTTTGCAATGTTTGTGATTGTGTCGCTAGCTTGCAATCTCCGGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 |
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| CDS CCA 72 bp | ACCACACAGGGCTTTGCAGGCCTCTGGCCCAGGCTCTaGCTCGATTTCGCTTGGTCCGGAGATTGCAAGCTA | + |
|
Preference number: 6 (lower is better) Translates to: TTQGFAGLWPRL*LDFAWSGDCKL Trigger: TAGCTTGCAATCTCCGGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCCTGCAAAGCCCTGTGTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 |
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| CDS CCA 72 bp | GCAGGCCTCTGGCCCAGGCTCTGGCTCGATTTCGCTTaGTCCGGAGATTGCAAGCTAGCGACACAATCACAA | + |
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Preference number: 6 (lower is better) Translates to: AGLWPRLWLDFA*SGDCKLATQSQ Trigger: TTGTGATTGTGTCGCTAGCTTGCAATCTCCGGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 |
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| CDS CAA 90 bp | ACAGGGCTTTGCAGGCCTCTGGCCCAGGCTCTGGCTCGATTTCGCTaGGTCCGGAGATTGCAAGCTAGCGACACAATCACAAACATTGCA | + |
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Preference number: 6 (lower is better) Translates to: TGLCRPLAQALARFR*VRRLQASDTITNIA Trigger: TGCAATGTTTGTGATTGTGTCGCTAGCTTGCAATCTCCGGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCCTGCAAAGCCCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 |
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| CDS CAA 90 bp | AGGCCTCTGGCCCAGGCTCTGGCTCGATTTCGCTTGGTCCGGAGATaGCAAGCTAGCGACACAATCACAAACATTGCAAACATTGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: RPLAQALARFRLVRR*QASDTITNIANIAK Trigger: TTTTGCAATGTTTGCAATGTTTGTGATTGTGTCGCTAGCTTGCAATCTCCGGACCAAGCGAAATCGAGCCAGAGCCTGGGCCAGAGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113376.10 ENSMUST00000166056.9 |
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