Pregenerated sensors for OMD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048368Ensembl transcript IDs: ENSMUST00000065494.8, ENSMUST00000221170.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTaGGTCTCTCTACTCAAAGTCGTCAGGCTCGGTAGTAAATGCTTT | + |
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Preference number: 1 (lower is better) Translates to: TLAHVAEEKLTTCGN*VSLLKVVRLGSKCF Trigger: AAAGCATTTACTACCGAGCCTGACGACTTTGAGTAGAGAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| 3UTR-3UTR CCA 90 bp | TCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAGCTGAACCATCTTGCTaGCCCTTACAAGTTTTTGCA | + |
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Preference number: 2 (lower is better) Translates to: SSLSGTCTLAHVAEEKLTAEPSC*PLQVFA Trigger: TGCAAAAACTTGTAAGGGCCAGCAAGATGGTTCAGC...TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| 3UTR-3UTR TCA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTAAATGCTTTATCTGCTaGACCATCTTGCTGGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVKCFIC*TILLAL Trigger: AAGGGCCAGCAAGATGGTTCAGCAGATAAAGCATTT...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| 3UTR-3UTR GCA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTTCTGCTGAACCATCTTaGTGGCCCTTACAAGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVSAEPS*WPLQVF Trigger: AAAAACTTGTAAGGGCCAGCAAGATGGTTCAGCAGA...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| 3UTR GCA 72 bp | ATTTTATGTAATTTATCATCGTCATTGTCAGGAACATaGACACTAGCACACGTGGCAGAGGAAAAGTTGACA | + |
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Preference number: 3 (lower is better) Translates to: ILCNLSSSLSGT*TLAHVAEEKLT Trigger: TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGATAAATTACATAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CCA 90 bp | TCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGTCACCAGCCCGTCCATaGCATTTGTTGGAAGTATGG | + |
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Preference number: 4 (lower is better) Translates to: SGTCTLAHVAEEKLTTCGSPARP*HLLEVW Trigger: CCATACTTCCAACAAATGCCATGGACGGGCTGGTGA...CCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR TCA 90 bp | TCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGCCTCTTGGTAGCTCCTaGAAACTTGGGTCTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SGTCTLAHVAEEKLTTCGPLGSS*KLGSSV Trigger: AACTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGG...CCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR TCA 90 bp | AGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATCAAGAGTGTTGTCCTaGCTGTCATGGTCGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: RNMHTSTRGRGKVDNLRESRVLS*LSWSSS Trigger: GGAAGACGACCATGACAGTCAGGACAACACTCTTGA...TTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR TCA 90 bp | CACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGAGTCTCAGTTGCATTGATGAATaGATTTGCAGTCACAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: HTSTRGRGKVDNLRELSLSCIDE*ICSHSL Trigger: GAGGCTGTGACTGCAAATTCATTCATCAATGCAACT...GAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CCA 90 bp | AGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAAATGGTGATGGTGTACTaGATCAGGAGAAGGACATAT | + |
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Preference number: 4 (lower is better) Translates to: RNMHTSTRGRGKVDNLREMVMVY*IRRRTY Trigger: ATATGTCCTTCTCCTGATCCAGTACACCATCACCAT...TTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR TCA 90 bp | TCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACATCATCTGATACTTCTTaGCCCTCAAGAGTGTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SSLSGTCTLAHVAEEKLTSSDTS*PSRVLS Trigger: GGACAACACTCTTGAGGGTCAAGAAGTATCAGATGA...TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR TCA 90 bp | CACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGAGTCTCGCAGAAGAAGATGTATaGACTTATTGGTTCTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: HTSTRGRGKVDNLRELSLAEEDV*TYWFFQ Trigger: CTGAAAGAACCAATAAGTTCATACATCTTCTTCTGC...GAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CCA 90 bp | CACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGAGTCTCGTCCATGGCATTTGTTaGAAGTATGGAGATTTCATT | + |
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Preference number: 4 (lower is better) Translates to: HTSTRGRGKVDNLRELSLVHGIC*KYGDFI Trigger: AATGAAATCTCCATACTTCCAACAAATGCCATGGAC...GAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CCA 90 bp | TCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAGTGCATTGGAATAATTaGGATAGTCTTGAGTTTACG | + |
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Preference number: 4 (lower is better) Translates to: SSLSGTCTLAHVAEEKLTVHWNN*DSLEFT Trigger: CGTAAACTCAAGACTATCCCAATTATTCCAATGCAC...TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CCA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTTTGCTGAATGTGCATTaGAATAATTGGGATAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVLLNVH*NNWDSL Trigger: AAGACTATCCCAATTATTCCAATGCACATTCAGCAA...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGGATCATAATCCTCATTaGGCTCTTGGTCATAATCGT | + |
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Preference number: 5 (lower is better) Translates to: SGTCTLAHVAEEKLTTCGDHNPH*ALGHNR Trigger: ACGATTATGACCAAGAGCCAAATGAGGATTATGATC...CCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | AACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGCGTCCATGGCATTTGTaGGAAGTATGGAGATTTCAT | + |
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Preference number: 5 (lower is better) Translates to: NMHTSTRGRGKVDNLRELRPWHL*EVWRFH Trigger: ATGAAATCTCCATACTTCCAACAAATGCCATGGACG...CAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGTGGAATGTAGAATGCTaGCTTCAATTTATTGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SGTCTLAHVAEEKLTTCGWNVEC*LQFIVS Trigger: GGACACAATAAATTGAAGCAAGCATTCTACATTCCA...CCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | CACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGAGTCTCAACTTGGGTCTTCAGTaGAATTGTTTCACCGTTAGT | + |
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Preference number: 5 (lower is better) Translates to: HTSTRGRGKVDNLRELSLNLGLQ*NCFTVS Trigger: ACTAACGGTGAAACAATTCAACTGAAGACCCAAGTT...GAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | CACACTAGCACACGTGGCAGAGGAAAAGTTGACAACCTGCGGGAATTGAGTCTCGTCTTGAGTTTACGATaGTCACAGTACATTGATGTT | + |
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Preference number: 5 (lower is better) Translates to: HTSTRGRGKVDNLRELSLVLSLR*SQYIDV Trigger: AACATCAATGTACTGTGACAATCGTAAACTCAAGAC...GAGACTCAATTCCCGCAGGTTGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TTTATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAATTCCTCTTCCTCCTCTaGGTAGCTCCTGAAAACTTG | + |
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Preference number: 5 (lower is better) Translates to: FIIVIVRNMHTSTRGRGKFLFLL*VAPENL Trigger: CAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAA...TTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGAACTGAAGGTTGAGTaGCTGAATGTGCATTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVELKVE*LNVHWN Trigger: ATTCCAATGCACATTCAGCAACTCAACCTTCAGTTC...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACATTCTTTCAGCTTATTTaGGTCCACACGAAGGTATGT | + |
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Preference number: 5 (lower is better) Translates to: SSLSGTCTLAHVAEEKLTFFQLI*VHTKVC Trigger: ACATACCTTCGTGTGGACCAAAATAAGCTGAAAGAA...TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS CCA 90 bp | GAGGTCAAGCATAGTCACATTCACCAGCCCGTCCATGGCATTTGTTaGAAGTATGGAGATTTCATTATAACCAAGAAGGAGTCTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: EVKHSHIHQPVHGIC*KYGDFIITKKESFQ Trigger: TTGGAAAGACTCCTTCTTGGTTATAATGAAATCTCCATACTTCCAACAAATGCCATGGACGGGCTGGTGAATGTGACTATGCTTGACCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGACAATGTCTTCCAGTTTGTaGTGTGATATTCTTAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: SSLSGTCTLAHVAEEKLTMSSSL*CDILRA Trigger: TGCTCTAAGAATATCACACAACAAACTGGAAGACAT...TGTCAACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTGCTTGCTTCAATTTATaGTGTCCAACGTTGAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVACFNL*CPTLSS Trigger: AGAACTCAACGTTGGACACAATAAATTGAAGCAAGC...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTAGTATCTTGCCACTCTaGCATCTCATAGTAATGAGA | + |
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Preference number: 5 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVSILPL*HLIVMR Trigger: TCTCATTACTATGAGATGCAAGAGTGGCAAGATACT...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | ATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGTTATAATTGGGATAGTCTaGAGTTTACGATTGTCACAG | + |
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Preference number: 5 (lower is better) Translates to: IIVIVRNMHTSTRGRGKVIIGIV*SLRLSQ Trigger: CTGTGACAATCGTAAACTCAAGACTATCCCAATTAT...AACTTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS-3UTR CAA 90 bp | TTTATCATCGTCATTGTCAGGAACATGCACACTAGCACACGTGGCAGAGGAAAAGATGTTCCAAATTCCTaGGAATGTAGAATGCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: FIIVIVRNMHTSTRGRGKDVPNS*ECRMLA Trigger: AGCAAGCATTCTACATTCCAAGGAATTTGGAACATC...TTTTCCTCTGCCACGTGTGCTAGTGTGCATGTTCCTGACAATGACGATGATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221170.2 |
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| CDS TCA 90 bp | GGTTCTTTCAGCTTATTTTGGTCCACACGAAGGTATGTTAAATGGTaGTGGTGTACTGGATCAGGAGAAGGACATATCATTGTCACATTG | + |
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Preference number: 5 (lower is better) Translates to: GSFSLFWSTRRYVKW*WCTGSGEGHIIVTL Trigger: CAATGTGACAATGATATGTCCTTCTCCTGATCCAGTACACCATCACCATTTAACATACCTTCGTGTGGACCAAAATAAGCTGAAAGAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS TCA 90 bp | ACCATAATAAATACTGTGTATACGAGGGAAGCAGAAGAAGATGTATaGACTTATTGGTTCTTTCAGCTTATTTTGGTCCACACGAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: TIINTVYTREAEEDV*TYWFFQLILVHTKV Trigger: TACCTTCGTGTGGACCAAAATAAGCTGAAAGAACCAATAAGTTCATACATCTTCTTCTGCTTCCCTCGTATACACAGTATTTATTATGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS TCA 72 bp | CATGGTCGTCTTCCTCTTCCTCCTCTTGGTAGCTCCTaGAAACTTGGGTCTTCAGTTGAATTGTTTCACCGT | + |
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Preference number: 6 (lower is better) Translates to: HGRLPLPPLGSS*KLGSSVELFHR Trigger: ACGGTGAAACAATTCAACTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAAGACGACCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CCA 72 bp | CATAGTCACATTCACCAGCCCGTCCATGGCATTTGTTaGAAGTATGGAGATTTCATTATAACCAAGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: HSHIHQPVHGIC*KYGDFIITKKE Trigger: CTCCTTCTTGGTTATAATGAAATCTCCATACTTCCAACAAATGCCATGGACGGGCTGGTGAATGTGACTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 90 bp | TTCCTCTTCCTCCTCTTGGTAGCTCCTGAAAACTTGGGTCTTCAGTaGAATTGTTTCACCGTTAGTACTCCTCTGCTCACCATAATAAAT | + |
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Preference number: 6 (lower is better) Translates to: FLFLLLVAPENLGLQ*NCFTVSTPLLTIIN Trigger: ATTTATTATGGTGAGCAGAGGAGTACTAACGGTGAAACAATTCAACTGAAGACCCAAGTTTTCAGGAGCTACCAAGAGGAGGAAGAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 72 bp | AGTCACAGCCTCAATGTCATTGAACTGAAGGTTGAGTaGCTGAATGTGCATTGGAATAATTGGGATAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SHSLNVIELKVE*LNVHWNNWDSL Trigger: AAGACTATCCCAATTATTCCAATGCACATTCAGCAACTCAACCTTCAGTTCAATGACATTGAGGCTGTGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 72 bp | TTGGTCATAATCGTCATCCCATCGGTAAGCTTCATATaGGCAGTATACTCTAACTCCAAAACAGAAGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: LVIIVIPSVSFI*AVYSNSKTEEK Trigger: CTTTTCTTCTGTTTTGGAGTTAGAGTATACTGCCAATATGAAGCTTACCGATGGGATGACGATTATGACCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 72 bp | TTTGATGAAATTGGAATTCTGGATCATAATCCTCATTaGGCTCTTGGTCATAATCGTCATCCCATCGGTAAG | + |
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Preference number: 6 (lower is better) Translates to: FDEIGILDHNPH*ALGHNRHPIGK Trigger: CTTACCGATGGGATGACGATTATGACCAAGAGCCAAATGAGGATTATGATCCAGAATTCCAATTTCATCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 90 bp | ATTTGGCTCTTGGTCATAATCGTCATCCCATCGGTAAGCTTCATATaGGCAGTATACTCTAACTCCAAAACAGAAGAAAAGGACATATAT | + |
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Preference number: 6 (lower is better) Translates to: IWLLVIIVIPSVSFI*AVYSNSKTEEKDIY Trigger: ATATATGTCCTTTTCTTCTGTTTTGGAGTTAGAGTATACTGCCAATATGAAGCTTACCGATGGGATGACGATTATGACCAAGAGCCAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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| CDS CAA 90 bp | ATTTTGATGAAATTGGAATTCTGGATCATAATCCTCATTTGGCTCTaGGTCATAATCGTCATCCCATCGGTAAGCTTCATATTGGCAGTA | + |
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Preference number: 6 (lower is better) Translates to: ILMKLEFWIIILIWL*VIIVIPSVSFILAV Trigger: TACTGCCAATATGAAGCTTACCGATGGGATGACGATTATGACCAAGAGCCAAATGAGGATTATGATCCAGAATTCCAATTTCATCAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065494.8 ENSMUST00000221170.2 |
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