RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLIG2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039830

Ensembl transcript IDs: ENSMUST00000035608.10

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGGGATGAACCTGCAGGGTGAGGCCCAGAGGTCGCTTCTGCAGTaGGGTTCCTGGGAGTCTCCTACCCCGCCTGAAGTGGGGGAAAGA +
Preference number: 1 (lower is better)
Translates to: PGMNLQGEAQRSLLQ*GSWESPTPPEVGER
Trigger: TCTTTCCCCCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCTGGGCCTCACCCTGCAGGTTCATCCCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 90 bp AACCTGCAGGGTGAGGCCCAGAGGTCGCTTCTGCAGTGCGGTTCCTaGGAGTCTCCTACCCCGCCTGAAGTGGGGGAAAGAAGTCAAGTG +
Preference number: 1 (lower is better)
Translates to: NLQGEAQRSLLQCGS*ESPTPPEVGERSQV
Trigger: CACTTGACTTCTTTCCCCCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCTGGGCCTCACCCTGCAGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR TCA 90 bp GAGGTCGCTTCTGCAGTGCGGTTCCTGGGAGTCTCCTACCCCGCCTaGAGTGGGGGAAAGAAGTCAAGTGCAGTGCTCTGCGTCTCGTCT +
Preference number: 1 (lower is better)
Translates to: EVASAVRFLGVSYPA*SGGKKSSAVLCVSS
Trigger: AGACGAGACGCAGAGCACTGCACTTGACTTCTTTCCCCCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 90 bp GTTCCAGGGATGAAAGTACCCGCGCGTTGTGGCCGTTTTGTACAATaGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCA +
Preference number: 1 (lower is better)
Translates to: VPGMKVPARCGRFVQ*RLPDPWSVQPKSQP
Trigger: TGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR GCA 90 bp GAGTCTCCTACCCCGCCTGAAGTGGGGGAAAGAAGTCAAGTGCAGTaGTCTGCGTCTCGTCTAAGCCCAGACAGGGAGTCAATCTTTGTA +
Preference number: 1 (lower is better)
Translates to: ESPTPPEVGERSQVQ*SASRLSPDRESIFV
Trigger: TACAAAGATTGACTCCCTGTCTGGGCTTAGACGAGACGCAGAGCACTGCACTTGACTTCTTTCCCCCACTTCAGGCGGGGTAGGAGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 90 bp CCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTaGAACGAACGCATCTCTCCATCGCTTCAAATGCTCCCATTGCTT +
Preference number: 1 (lower is better)
Translates to: PPRPLECSAKESTRF*NERISPSLQMLPLL
Trigger: AAGCAATGGGAGCATTTGAAGCGATGGAGAGATGCGTTCGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR-3UTR CCA 90 bp CTGATACCCACGCCAGCGTCTACTAACTTAGTGCCTGGCCCTGGGCCAGGGATGCTACCCCGCCTGAAGTaGGGGAAAGAAGTCAAGTGC +
Preference number: 2 (lower is better)
Translates to: LIPTPASTNLVPGPGPGMLPRLK*GKEVKC
Trigger: GCACTTGACTTCTTTCCCCCACTTCAGGCGGGGTAG...CATCCCTGGCCCAGGGCCAGGCACTAAGTTAGTAGACGCTGGCGTGGGTATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR-3UTR TCA 90 bp GTCTGTAAAGCTTGCTCCTGTGCTCTGAAAAGGAACATTCACAGATTTGTTAGGGCCCTGGGCCAGGGATaGACCTGCAGGGTGAGGCCC +
Preference number: 2 (lower is better)
Translates to: VCKACSCALKRNIHRFVRALGQG*TCRVRP
Trigger: GGGCCTCACCCTGCAGGTTCATCCCTGGCCCAGGGC...CCTAACAAATCTGTGAATGTTCCTTTTCAGAGCACAGGAGCAAGCTTTACAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR-3UTR CAA 90 bp GGGTGCAGGCAGGAAGTTCCAGGGATGAAAGTACCCGCGCGTTGTGGCCGTTTTGCTGCTCCGCAGCCCTaGGCTCTCCAGGACGCACCC +
Preference number: 3 (lower is better)
Translates to: GCRQEVPGMKVPARCGRFAAPQP*ALQDAP
Trigger: GGGTGCGTCCTGGAGAGCCAAGGGCTGCGGAGCAGC...AAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAACTTCCTGCCTGCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR GCA 72 bp AACCTGCAGGGTGAGGCCCAGAGGTCGCTTCTGCAGTaGGGTTCCTGGGAGTCTCCTACCCCGCCTGAAGTG +
Preference number: 3 (lower is better)
Translates to: NLQGEAQRSLLQ*GSWESPTPPEV
Trigger: CACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCTGGGCCTCACCCTGCAGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 72 bp GGTGAGGCCCAGAGGTCGCTTCTGCAGTGCGGTTCCTaGGAGTCTCCTACCCCGCCTGAAGTGGGGGAAAGA +
Preference number: 3 (lower is better)
Translates to: GEAQRSLLQCGS*ESPTPPEVGER
Trigger: TCTTTCCCCCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCTGGGCCTCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR-3UTR CAA 90 bp CCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGAAGTCCAGCTCCCCTTCTaGCAACAGAGCCCCGGAGCC +
Preference number: 3 (lower is better)
Translates to: PPRPLECSAKESTRFWNEVQLPF*QQSPGA
Trigger: GGCTCCGGGGCTCTGTTGCAAGAAGGGGAGCTGGAC...TTCGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR GCA 72 bp ACCCCGCCTGAAGTGGGGGAAAGAAGTCAAGTGCAGTaGTCTGCGTCTCGTCTAAGCCCAGACAGGGAGTCA +
Preference number: 3 (lower is better)
Translates to: TPPEVGERSQVQ*SASRLSPDRES
Trigger: TGACTCCCTGTCTGGGCTTAGACGAGACGCAGAGCACTGCACTTGACTTCTTTCCCCCACTTCAGGCGGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 72 bp GCAGGAAGTTCCAGGGATGAAAGTACCCGCGCGTTGTaGCCGTTTTGTACAATGGCGCCTCCCAGACCCTTG +
Preference number: 3 (lower is better)
Translates to: AGSSRDESTRAL*PFCTMAPPRPL
Trigger: CAAGGGTCTGGGAGGCGCCATTGTACAAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAACTTCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR GCA 72 bp CAGCGTCCCCAGTCGGGTAAGAAACCAATTGATGTGTaGTTAGAATGTGTGTTGCGTGAGTGTGTGTGTGCG +
Preference number: 3 (lower is better)
Translates to: QRPQSGKKPIDV*LECVLRECVCA
Trigger: CGCACACACACACTCACGCAACACACATTCTAAGCACACATCAATTGGTTTCTTACCCGACTGGGGACGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CCA 72 bp CCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTaGAACGAACGCATCTCTCCATCGCTTCAAATGCTC +
Preference number: 3 (lower is better)
Translates to: PLECSAKESTRF*NERISPSLQML
Trigger: GAGCATTTGAAGCGATGGAGAGATGCGTTCGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR-3UTR CAA 90 bp TTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCACTTCAAATGCTCCCATaGCTTCGGTTCCCATATATT +
Preference number: 3 (lower is better)
Translates to: FVQWRLPDPWSVQPKSQPLQMLP*LRFPYI
Trigger: AATATATGGGAACCGAAGCAATGGGAGCATTTGAAG...TGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CCAGCGCTGGCCTGTCCGCGCTGCTCCGCAGCCCTTGGCTCTCCAGGACGCACCATAGCCGACACGTGGTaGTGCGGCGGCGGCACCTGG +
Preference number: 4 (lower is better)
Translates to: PALACPRCSAALGSPGRTIADTW*CGGGTW
Trigger: CCAGGTGCCGCCGCCGCACCACCACGTGTCGGCTAT...GGTGCGTCCTGGAGAGCCAAGGGCTGCGGAGCAGCGCGGACAGGCCAGCGCTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp CCCAGCGCTGGCCTGTCCGCGCTGCTCCGCAGCCCTTGGCTCTCCAGGACGCACTGCGTTCGCGGCTGTTaGTCTTCAGGCGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: PSAGLSALLRSPWLSRTHCVRGC*SSGAAA
Trigger: AGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCA...GTGCGTCCTGGAGAGCCAAGGGCTGCGGAGCAGCGCGGACAGGCCAGCGCTGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp GGGTGCAGGCAGGAAGTTCCAGGGATGAAAGTACCCGCGCGTTGTGGCCGTTTTCCGGTAGAGAGGCGCTaGACACCGCTGCGGCGGCGG +
Preference number: 4 (lower is better)
Translates to: GCRQEVPGMKVPARCGRFPVERR*TPLRRR
Trigger: CCGCCGCCGCAGCGGTGTCCAGCGCCTCTCTACCGG...AAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAACTTCCTGCCTGCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp AGAGGTCGCTTCTGCAGTGCGGTTCCTGGGAGTCTCCTACCCCGCCTGAAGTGGACACAGTCCCTCCTGTaGAGCCGCTGCTGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: RGRFCSAVPGSLLPRLKWTQSLL*SRCCFP
Trigger: GGGGAAGCAGCAGCGGCTTCACAGGAGGGACTGTGT...CCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp AGAGGTCGCTTCTGCAGTGCGGTTCCTGGGAGTCTCCTACCCCGCCTGAAGTGGGGTGCTGGAGGAAGATaGCTTGAAGCCACCGCCGCC +
Preference number: 4 (lower is better)
Translates to: RGRFCSAVPGSLLPRLKWGAGGR*LEATAA
Trigger: GGCGGCGGTGGCTTCAAGTCATCTTCCTCCAGCACC...CCACTTCAGGCGGGGTAGGAGACTCCCAGGAACCGCACTGCAGAAGCGACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp CCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGAAGCCGACACGTGGTGGTaGGGCGGCGGCACCTGGCAC +
Preference number: 4 (lower is better)
Translates to: PPRPLECSAKESTRFWNEADTWW*GGGTWH
Trigger: GTGCCAGGTGCCGCCGCCGCACCACCACGTGTCGGC...TTCGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGATGCCGCCCCAGTGCTaGAAGCCACCGCTGCCACCG +
Preference number: 4 (lower is better)
Translates to: RLPDPWSVQPKSQPGSGTMPPQC*KPPLPP
Trigger: CGGTGGCAGCGGTGGCTTCCAGCACTGGGGCGGCAT...CGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp CTGATACCCACGCCAGCGTCTACTAACTTAGTGCCTGGCCCTGGGCCAGGGATGATCTTCAGGCGCAGCTaGTGCAGCTCGGGCTCAGTC +
Preference number: 4 (lower is better)
Translates to: LIPTPASTNLVPGPGPGMIFRRS*CSSGSV
Trigger: GACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGAT...CATCCCTGGCCCAGGGCCAGGCACTAAGTTAGTAGACGCTGGCGTGGGTATCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp CCGTTTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAGCTGGAAGCCACCGCTaGCACCGCTGCCTCCACCCC +
Preference number: 4 (lower is better)
Translates to: PFCTMAPPRPLECSAKESAGSHR*HRCLHP
Trigger: GGGGTGGAGGCAGCGGTGGCAGCGGTGGCTTCCAGC...TGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAAACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CTGATACCCACGCCAGCGTCTACTAACTTAGTGCCTGGCCCTGGGCCAGGGATGGGGTTCTGGGGACGATaGGCGACTAGACACCAGGCT +
Preference number: 4 (lower is better)
Translates to: LIPTPASTNLVPGPGPGMGFWGR*ATRHQA
Trigger: AGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCC...CATCCCTGGCCCAGGGCCAGGCACTAAGTTAGTAGACGCTGGCGTGGGTATCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp TTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAACTTGGCGTCGGAGGTaGGGCGCGGCAAGGTGCCGG +
Preference number: 4 (lower is better)
Translates to: FVQWRLPDPWSVQPKSQPTWRRR*GAARCR
Trigger: CCGGCACCTTGCCGCGCCTCACCTCCGACGCCAAGT...TGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CAA 72 bp CAGGCAGGAAGTTCCAGGGATGAAAGTACCCGCGCGTaGTGGCCGTTTTGTACAATGGCGCCTCCCAGACCC +
Preference number: 4 (lower is better)
Translates to: QAGSSRDESTRA*WPFCTMAPPRP
Trigger: GGGTCTGGGAGGCGCCATTGTACAAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAACTTCCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp CCGTTTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAGACTTGAGCAGGCCGTaGGGAGGCCGGATGGATCCG +
Preference number: 4 (lower is better)
Translates to: PFCTMAPPRPLECSAKESDLSRP*GGRMDP
Trigger: CGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTC...TGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAAACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CCGTTTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAGGCAGTCGCTCGGCGTaGACGAGGACACAGTCCCTC +
Preference number: 4 (lower is better)
Translates to: PFCTMAPPRPLECSAKESGSRSA*TRTQSL
Trigger: GAGGGACTGTGTCCTCGTCCACGCCGAGCGACTGCC...TGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAAACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp CCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGAACGTCCATGGCGATGTTaGGGTCGTGCATGCGCTTGC +
Preference number: 4 (lower is better)
Translates to: PPRPLECSAKESTRFWNERPWRC*GRACAC
Trigger: GCAAGCGCATGCACGACCTCAACATCGCCATGGACG...TTCGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGTCTTGTCTTTCTTGGTaGAAGACGTGGCCGCCGAGG +
Preference number: 4 (lower is better)
Translates to: RLPDPWSVQPKSQPGSGTSCLSW*KTWPPR
Trigger: CCTCGGCGGCCACGTCTTCCACCAAGAAAGACAAGA...CGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp CGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCAGGTTCTGGAACGAAGATCATCGGGTTCTaGGGACGATGGGCGACTAGA +
Preference number: 4 (lower is better)
Translates to: RLPDPWSVQPKSQPGSGTKIIGF*GRWATR
Trigger: TCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTT...CGTTCCAGAACCTGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR TCA 90 bp TTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCATGGAGGAAGATGACTTaGAGCCACCGCCGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: FVQWRLPDPWSVQPKSQPWRKMT*SHRRPV
Trigger: AACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCA...TGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp ATTCACAGATTTGTTAGGAAACCACAAATCAACAGGAGAGACAACAGGAGGGAACACCGCTGCCACCGCTaGCTCCACCCCCGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: IHRFVRKPQINRRDNRREHRCHR*LHPRLR
Trigger: TCGGAGGCGGGGGTGGAGGCAGCGGTGGCAGCGGTG...TTCCCTCCTGTTGTCTCTCCTGTTGATTTGTGGTTTCCTAACAAATCTGTGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp ATTCACAGATTTGTTAGGAAACCACAAATCAACAGGAGAGACAACAGGAGGGAACTGCGGGAGGGAGGATaGGGTGGTGCACGGCCGGGT +
Preference number: 4 (lower is better)
Translates to: IHRFVRKPQINRRDNRRELREGG*GGARPG
Trigger: ACCCGGCCGTGCACCACCCCATCCTCCCTCCCGCAG...TTCCCTCCTGTTGTCTCTCCTGTTGATTTGTGGTTTCCTAACAAATCTGTGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp AGCTCAAACTATATTCACAGCAACTTTTTGATGTTGTTCTTTTGTCAAGCCCCCGGAGGGAGGATGGGGTaGTGCACGGCCGGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: SSNYIHSNFLMLFFCQAPGGRMG*CTAGWC
Trigger: GCACCACCCGGCCGTGCACCACCCCATCCTCCCTCC...GGGGGCTTGACAAAAGAACAACATCAAAAAGTTGCTGTGAATATAGTTTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CCA 90 bp AGCTCAAACTATATTCACAGCAACTTTTTGATGTTGTTCTTTTGTCAAGCCCCCCCCATAGCCGACACGTaGTGGTGCGGCGGCGGCACC +
Preference number: 4 (lower is better)
Translates to: SSNYIHSNFLMLFFCQAPPIADT*WCGGGT
Trigger: GGTGCCGCCGCCGCACCACCACGTGTCGGCTATGGG...GGGGGCTTGACAAAAGAACAACATCAAAAAGTTGCTGTGAATATAGTTTGAGCT
52% GC, longest homopolymer 8 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp AGCTCAAACTATATTCACAGCAACTTTTTGATGTTGTTCTTTTGTCAAGCCCCCGCACCTGGCACATGCTaGAGGGGCACGGCATGCCGC +
Preference number: 4 (lower is better)
Translates to: SSNYIHSNFLMLFFCQAPAPGTC*RGTACR
Trigger: GCGGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGC...GGGGGCTTGACAAAAGAACAACATCAAAAAGTTGCTGTGAATATAGTTTGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR GCA 90 bp TTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAACCATCGGGCTCAGTCATCTaGTTCTTGTCTTTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: FVQWRLPDPWSVQPKSQPSGSVI*FLSFLV
Trigger: CACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGA...TGGTTGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
3UTR CAA 72 bp AAGACCCAAAAAGGATTCCGTTCCATATCGGGACTTTaGGGATTATTCCATTCCACAAGTGCTATTTTAAGC +
Preference number: 4 (lower is better)
Translates to: KTQKGFRSISGL*GLFHSTSAILS
Trigger: GCTTAAAATAGCACTTGTGGAATGGAATAATCCCAAAAGTCCCGATATGGAACGGAATCCTTTTTGGGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 90 bp GGATGGATCCGACCGAGGACAGCCCGGAGCCCGGTAGAGAGGCGCTaGACACCGCTGCGGCGGCGGCGGCTGCGGCGGCGGCGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: GWIRPRTARSPVERR*TPLRRRRLRRRRRL
Trigger: CAGCCGCCGCCGCCGCCGCAGCCGCCGCCGCCGCAGCGGTGTCCAGCGCCTCTCTACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS TCA 90 bp CACCCCCGCCTCCGAGAGGGGCGGCTGCGGCTGCCGACGGTGACTTaGGCAGGCCGTGCGGAGGCCGGATGGATCCGACCGAGGACAGCC +
Preference number: 5 (lower is better)
Translates to: HPRLREGRLRLPTVT*AGRAEAGWIRPRTA
Trigger: GGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAGGCGGGGGTG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS TCA 90 bp GCCTCCACCCCCGCCTCCGAGAGGGGCGGCTGCGGCTGCCGACGGTaGCTTGAGCAGGCCGTGCGGAGGCCGGATGGATCCGACCGAGGA +
Preference number: 5 (lower is better)
Translates to: ASTPASERGGCGCRR*LEQAVRRPDGSDRG
Trigger: TCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAGGCGGGGGTGGAGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS GCA 90 bp CCGAGAGGGGCGGCTGCGGCTGCCGACGGTGACTTGAGCAGGCCGTaGGGAGGCCGGATGGATCCGACCGAGGACAGCCCGGAGCCCGGT +
Preference number: 5 (lower is better)
Translates to: PRGAAAAADGDLSRP*GGRMDPTEDSPEPG
Trigger: ACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS GCA 90 bp GTGAGGCGCGGCAAGGTGCCGGCGCCCATAGCCGACACGTGGTGGTaGGGCGGCGGCACCTGGCACATGCTGCAGGGGCACGGCATGCCG +
Preference number: 5 (lower is better)
Translates to: VRRGKVPAPIADTWW*GGGTWHMLQGHGMP
Trigger: CGGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGCCGCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCTCAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 90 bp CACCGCCGCCCAGTTTGTCCCCGGGATGCGCGCCTGACGCGCCCATaGCCCCTCGTAGCTCGGAGCTCAGCTCTGGCGGGCAGTCGCTCG +
Preference number: 5 (lower is better)
Translates to: HRRPVCPRDARLTRP*PLVARSSALAGSRS
Trigger: CGAGCGACTGCCCGCCAGAGCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTGGGCGGCGGTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS GCA 90 bp GAGGAAGATGACTTGAAGCCACCGCCGCCCAGTTTGTCCCCGGGATaGGCGCCTGACGCGCCCATGGCCCCTCGTAGCTCGGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: EEDDLKPPPPSLSPG*APDAPMAPRSSELS
Trigger: GCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CAA 90 bp CTGATACCCACGCCAGCGTCTACTAACTTAGTGCCTGGCCCTGGGCCAGGGATGCCACCGCCGCCCAGTTaGTCCCCGGGATGCGCGCCT +
Preference number: 5 (lower is better)
Translates to: LIPTPASTNLVPGPGPGMPPPPS*SPGCAP
Trigger: AGGCGCGCATCCCGGGGACAAACTGGGCGGCGGTGG...CATCCCTGGCCCAGGGCCAGGCACTAAGTTAGTAGACGCTGGCGTGGGTATCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CAA 90 bp CCGTTTTGTACAATGGCGCCTCCCAGACCCTTGGAGTGTTCAGCCAAAGAGTCAGCTGCCGACGGTGACTaGAGCAGGCCGTGCGGAGGC +
Preference number: 5 (lower is better)
Translates to: PFCTMAPPRPLECSAKESAADGD*SRPCGG
Trigger: GCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGC...TGACTCTTTGGCTGAACACTCCAAGGGTCTGGGAGGCGCCATTGTACAAAACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 90 bp GCTCGGGCTCAGTCATCTGCTTCTTGTCTTTCTTGGTGGAAGACGTaGCCGCCGAGGACGTGGACGAGGAGGTGCTGGAGGAAGATGACT +
Preference number: 5 (lower is better)
Translates to: ARAQSSASCLSWWKT*PPRTWTRRCWRKMT
Trigger: AGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCCTCGGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CAA 90 bp GGGTGCAGGCAGGAAGTTCCAGGGATGAAAGTACCCGCGCGTTGTGGCCGTTTTTCAGTCATCTGCTTCTaGTCTTTCTTGGTGGAAGAC +
Preference number: 5 (lower is better)
Translates to: GCRQEVPGMKVPARCGRFSVICF*SFLVED
Trigger: GTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGA...AAAACGGCCACAACGCGCGGGTACTTTCATCCCTGGAACTTCCTGCCTGCACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CAA 90 bp AGCTCAAACTATATTCACAGCAACTTTTTGATGTTGTTCTTTTGTCAAGCCCCCTTGCGTTCGCGGCTGTaGATCTTCAGGCGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SSNYIHSNFLMLFFCQAPLRSRL*IFRRSC
Trigger: GCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAA...GGGGGCTTGACAAAAGAACAACATCAAAAAGTTGCTGTGAATATAGTTTGAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS-3UTR CAA 90 bp ATTCACAGATTTGTTAGGAAACCACAAATCAACAGGAGAGACAACAGGAGGGAATGCTTCTTGTCTTTCTaGGTGGAAGACGTGGCCGCC +
Preference number: 5 (lower is better)
Translates to: IHRFVRKPQINRRDNRRECFLSF*VEDVAA
Trigger: GGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCA...TTCCCTCCTGTTGTCTCTCCTGTTGATTTGTGGTTTCCTAACAAATCTGTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 90 bp CCACCCCCGCCTCCGAGAGGGGCGGCTGCGGCTGCCGACGGTGACTaGAGCAGGCCGTGCGGAGGCCGGATGGATCCGACCGAGGACAGC +
Preference number: 6 (lower is better)
Translates to: PPPPPRGAAAAADGD*SRPCGGRMDPTEDS
Trigger: GCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAGGCGGGGGTGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS TCA 72 bp CTCCGAGAGGGGCGGCTGCGGCTGCCGACGGTGACTTaGGCAGGCCGTGCGGAGGCCGGATGGATCCGACCG +
Preference number: 6 (lower is better)
Translates to: LREGRLRLPTVT*AGRAEAGWIRP
Trigger: CGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS GCA 72 bp GCGGCTGCGGCTGCCGACGGTGACTTGAGCAGGCCGTaGGGAGGCCGGATGGATCCGACCGAGGACAGCCCG +
Preference number: 6 (lower is better)
Translates to: AAAAADGDLSRP*GGRMDPTEDSP
Trigger: CGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS GCA 72 bp GGCAAGGTGCCGGCGCCCATAGCCGACACGTGGTGGTaGGGCGGCGGCACCTGGCACATGCTGCAGGGGCAC +
Preference number: 6 (lower is better)
Translates to: GKVPAPIADTWW*GGGTWHMLQGH
Trigger: GTGCCCCTGCAGCATGTGCCAGGTGCCGCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 72 bp CCTCCGAGAGGGGCGGCTGCGGCTGCCGACGGTGACTaGAGCAGGCCGTGCGGAGGCCGGATGGATCCGACC +
Preference number: 6 (lower is better)
Translates to: PPRGAAAAADGD*SRPCGGRMDPT
Trigger: GGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGCCCCTCTCGGAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 72 bp CCAGTTTGTCCCCGGGATGCGCGCCTGACGCGCCCATaGCCCCTCGTAGCTCGGAGCTCAGCTCTGGCGGGC +
Preference number: 6 (lower is better)
Translates to: PVCPRDARLTRP*PLVARSSALAG
Trigger: GCCCGCCAGAGCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 90 bp GAGGAGGTGCTGGAGGAAGATGACTTGAAGCCACCGCCGCCCAGTTaGTCCCCGGGATGCGCGCCTGACGCGCCCATGGCCCCTCGTAGC +
Preference number: 6 (lower is better)
Translates to: EEVLEEDDLKPPPPS*SPGCAPDAPMAPRS
Trigger: GCTACGAGGGGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 72 bp CTGGAGGAAGATGACTTGAAGCCACCGCCGCCCAGTTaGTCCCCGGGATGCGCGCCTGACGCGCCCATGGCC +
Preference number: 6 (lower is better)
Translates to: LEEDDLKPPPPS*SPGCAPDAPMA
Trigger: GGCCATGGGCGCGTCAGGCGCGCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 72 bp GAGGACGTGGACGAGGAGGTGCTGGAGGAAGATGACTaGAAGCCACCGCCGCCCAGTTTGTCCCCGGGATGC +
Preference number: 6 (lower is better)
Translates to: EDVDEEVLEEDD*KPPPPSLSPGC
Trigger: GCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 72 bp CTTGCTCCGGGCGGGCAGAAAAAGATCATCGGGTTCTaGGGACGATGGGCGACTAGACACCAGGCTGGCGTC +
Preference number: 6 (lower is better)
Translates to: LAPGGQKKIIGF*GRWATRHQAGV
Trigger: GACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTTTTTCTGCCCGCCCGGAGCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 72 bp GGCGGGCAGAAAAAGATCATCGGGTTCTGGGGACGATaGGCGACTAGACACCAGGCTGGCGTCCGAGTCCAT +
Preference number: 6 (lower is better)
Translates to: GGQKKIIGFWGR*ATRHQAGVRVH
Trigger: ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTTTTTCTGCCCGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CCA 72 bp GCAGCTCGGGCTCAGTCATCTGCTTCTTGTCTTTCTTaGTGGAAGACGTGGCCGCCGAGGACGTGGACGAGG +
Preference number: 6 (lower is better)
Translates to: AARAQSSASCLS*WKTWPPRTWTR
Trigger: CCTCGTCCACGTCCTCGGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10
CDS CAA 72 bp TGCAGCTCGGGCTCAGTCATCTGCTTCTTGTCTTTCTaGGTGGAAGACGTGGCCGCCGAGGACGTGGACGAG +
Preference number: 6 (lower is better)
Translates to: CSSGSVICFLSF*VEDVAAEDVDE
Trigger: CTCGTCCACGTCCTCGGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGAGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035608.10