Pregenerated sensors for OLIG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046160Ensembl transcript IDs: ENSMUST00000056882.7
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGAGCCTGTaGGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGAC | + |
Preference number: 1 (lower is better) Translates to: PPRSAWFGWREQGSL*AQALDKERTPLWVD Trigger: GTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 90 bp | TCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAAC | + |
Preference number: 1 (lower is better) Translates to: SGPGQGKDAPLGRHC*GAALRPGSGSMPGN Trigger: GTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 90 bp | TACAGTCTGTCGTCTGGGAGAGAAGTCTGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGA | + |
Preference number: 1 (lower is better) Translates to: YSLSSGREVWKCPPF*GQLCLDPGRGGAGR Trigger: TCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 90 bp | GCGGGGAAGAAGGCGCCCTACAGTCTGTCGTCTGGGAGAGAAGTCTaGAAATGTCCTCCTTTCTGGGGCCAGCTCTGCCTAGATCCAGGA | + |
Preference number: 1 (lower is better) Translates to: AGKKAPYSLSSGREV*KCPPFWGQLCLDPG Trigger: TCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTAGGGCGCCTTCTTCCCCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR TCA 90 bp | AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCACCCCTGCCAGTGGGTaGGTTGTGGTGGGGATGCGA | + |
Preference number: 2 (lower is better) Translates to: KCQRLPACSAAGRRFGILTPASG*VVVGMR Trigger: TCGCATCCCCACCACAACTCACCCACTGGCAGGGGT...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | GCTAGTCACAAGCCAAGACGCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTCCAGCTCGGAAACCCTaGGCTTTCCAGAGCGGCCCA | + |
Preference number: 2 (lower is better) Translates to: ASHKPRRGTHARTRPRSSPARKP*AFQSGP Trigger: TGGGCCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGG...AGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGCGTCTTGGCTTGTGACTAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR GCA 90 bp | CACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGCCCATCCGGAGCAAGGGAGCCTGTaGGCTCAGGCCCTGGACAAG | + |
Preference number: 2 (lower is better) Translates to: HPRNIQLGNPGLSRAAHPEQGSL*AQALDK Trigger: CTTGTCCAGGGCCTGAGCGCACAGGCTCCCTTGCTC...CGGATGGGCCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGTGTCACCCCTGCCAGTaGGTGAGTTGTGGTGGGGAT | + |
Preference number: 2 (lower is better) Translates to: ERKHARKPSWGQPFAAPRCHPCQ*VSCGGD Trigger: ATCCCCACCACAACTCACCCACTGGCAGGGGTGACA...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGGAAAGGACGCCCCTCTaGGTAGACACTGTTGGGGAG | + |
Preference number: 2 (lower is better) Translates to: TERTRVTSSSETLGFPERERTPL*VDTVGE Trigger: CTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTC...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | GCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTTCAGCCGCACTGCTGTGGTCCTGAAAAACAGAACTaGGAGTGGAGAGGAACCTCT | + |
Preference number: 2 (lower is better) Translates to: AAPTRARVHGVLQPHCCGPEKQN*EWRGTS Trigger: AGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGG...ACCACAGCAGTGCGGCTGAAGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR GCA 90 bp | ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGTTGGGTTATTTTAATTaGCAGGGAGTGGGGGCGGGG | + |
Preference number: 2 (lower is better) Translates to: TERTRVTSSSETLGFPERLGYFN*QGVGAG Trigger: CCCCGCCCCCACTCCCTGGCAATTAAAATAACCCAA...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR GCA 90 bp | AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCTTAAGGAGCATAAACTaGAACAAAACACCTGGGCGA | + |
Preference number: 2 (lower is better) Translates to: KCQRLPACSAAGRRFGILLRSIN*NKTPGR Trigger: TCGCCCAGGTGTTTTGTTGCAGTTTATGCTCCTTAA...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGAT | + |
Preference number: 2 (lower is better) Translates to: ERKHARKPSWGQPFAAPRKCPPF*GQLCLD Trigger: ATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTT...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR GCA 90 bp | CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGAGGGGGTTGTCACCCCTaGCAGTGGGTGAGTTGTGGT | + |
Preference number: 2 (lower is better) Translates to: LGFLDLLDPHGLAGESKGGGCHP*QWVSCG Trigger: ACCACAACTCACCCACTGGCAGGGGTGACAACCCCC...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAATTGCCAGGGAGTaGGGGCGGGGAAGAAGGCGC | + |
Preference number: 2 (lower is better) Translates to: PMAWNVVGILFSSKLKRWLIARE*GRGRRR Trigger: GCGCCTTCTTCCCCGCCCCCACTCCCTGGCAATTAA...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | AGTCCGAACACCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTAAACAGAACTGGGAGTaGAGAGGAACCTCTCCACTT | + |
Preference number: 2 (lower is better) Translates to: SPNTDGMERGWNFVFKQAKQNWE*RGTSPL Trigger: AAGTGGAGAGGTTCCTCTCCACTCCCAGTTCTGTTT...AGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGGTGTTCGGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CCA 90 bp | CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTACTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCA | + |
Preference number: 2 (lower is better) Translates to: RGWNFVFKQAQTLVKLPLLGRHC*GAALRP Trigger: TGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAG...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 90 bp | GGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTaGGTTAAGCTACCTTTAGGGAAGTGGAGACTAAGTAAGGGTTTT | + |
Preference number: 2 (lower is better) Translates to: GMERGWNFVFKQAQT*VKLPLGKWRLSKGF Trigger: AAAACCCTTACTTAGTCTCCACTTCCCTAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR GCA 72 bp | AGCCGCACTGCTGTGGTTAAGGACCAGCCTGTGAAGTaGCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGG | + |
Preference number: 3 (lower is better) Translates to: SRTAVVKDQPVK*QRLPACSAAGR Trigger: CCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTTCACAGGCTGGTCCTTAACCACAGCAGTGCGGCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CAA 90 bp | CCTGTGCGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTCCGCGGTGGTGGGGGTaGTCACCCCTGCCAGTGGGT | + |
Preference number: 3 (lower is better) Translates to: PVRSGPGQGKDAPLGRHCPRWWG*SPLPVG Trigger: ACCCACTGGCAGGGGTGACAACCCCCACCACCGCGG...ACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCACAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR TCA 72 bp | TCTTCAGCCGCACTGCTGTGGTTAAGGACCAGCCTGTaGAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGG | + |
Preference number: 3 (lower is better) Translates to: SSAALLWLRTSL*SASAFPPAARR Trigger: CCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTTCACAGGCTGGTCCTTAACCACAGCAGTGCGGCTGAAGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR GCA 72 bp | GCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTaGACCCAGGGCAACCCCCTTATACCGCACCGGCCG | + |
Preference number: 3 (lower is better) Translates to: ACQETKLGAAFR*TQGNPLIPHRP Trigger: CGGCCGGTGCGGTATAAGGGGGTTGCCCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR GCA 72 bp | GTTGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATaGCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGC | + |
Preference number: 3 (lower is better) Translates to: VGEQLLGQGAEA*QETKLGAAFRC Trigger: GCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | CGCGATGCTCACGGATACGAGAATAGCCCGCGGTGGTaGGGGTTGTCACCCCTGCCAGTGGGTGAGTTGTGG | + |
Preference number: 3 (lower is better) Translates to: RDAHGYENSPRW*GLSPLPVGELW Trigger: CCACAACTCACCCACTGGCAGGGGTGACAACCCCCACCACCGCGGGCTATTCTCGTATCCGTGAGCATCGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | TGCGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTaGGTAGACACTGTTGGGGAGCAGCTCTTAGGCCAG | + |
Preference number: 3 (lower is better) Translates to: CAQALDKERTPL*VDTVGEQLLGQ Trigger: CTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR GCA 72 bp | GAAGTCTGGAAATGTCCTCCTTTCTGGGGCCAGCTCTaGCTAGATCCAGGACGCGGGGGCGCGGGAAGATTG | + |
Preference number: 3 (lower is better) Translates to: EVWKCPPFWGQL*LDPGRGGAGRL Trigger: CAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | TCGTCTGGGAGAGAAGTCTGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGC | + |
Preference number: 3 (lower is better) Translates to: SSGREVWKCPPF*GQLCLDPGRGG Trigger: GCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | GGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATG | + |
Preference number: 3 (lower is better) Translates to: GQGKDAPLGRHC*GAALRPGSGSM Trigger: CATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | CGGTGGCCTGGGCTTTCTAGACCTCCTAGATCCGCATaGTTTGGCTGGAGAGAGCAAGGGAGCCTGTGCGCT | + |
Preference number: 3 (lower is better) Translates to: RWPGLSRPPRSA*FGWREQGSLCA Trigger: AGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCCACCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR-3UTR CAA 90 bp | CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGACTGCCAGTGGGTGAGTaGTGGTGGGGATGCGAAGAC | + |
Preference number: 3 (lower is better) Translates to: LGFLDLLDPHGLAGESKGLPVGE*WWGCED Trigger: GTCTTCGCATCCCCACCACAACTCACCCACTGGCAG...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | AAGGCGCCCTACAGTCTGTCGTCTGGGAGAGAAGTCTaGAAATGTCCTCCTTTCTGGGGCCAGCTCTGCCTA | + |
Preference number: 3 (lower is better) Translates to: KAPYSLSSGREV*KCPPFWGQLCL Trigger: TAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTAGGGCGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CCA 72 bp | AAACACCTGGGCGAGCCTGAAAAACAGAACTGGGAGTaGAGAGGAACCTCTCCACTTCGCATCCCCAACCAC | + |
Preference number: 3 (lower is better) Translates to: KHLGEPEKQNWE*RGTSPLRIPNH Trigger: GTGGTTGGGGATGCGAAGTGGAGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGGCTCGCCCAGGTGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR TCA 72 bp | AGGAGCATAAACTGCAACAAAACACCTGGGCGAGCCTaGAAAACAGAACTGGGAGTGGAGAGGAACCTCTCC | + |
Preference number: 3 (lower is better) Translates to: RSINCNKTPGRA*KTELGVERNLS Trigger: GGAGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGGCTCGCCCAGGTGTTTTGTTGCAGTTTATGCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | CTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGATaGGCTGAGGTCGCGCTCCGCCCCGGGCCCAGCCAG | + |
Preference number: 4 (lower is better) Translates to: LCLDPGRGGAGR*AEVALRPGPSQ Trigger: CTGGCTGGGCCCGGGGCGGAGCGCGACCTCAGCCAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | GGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCAGCGAGGCCCCGAGCTaGACGTCTCCAGGCCGCTGT | + |
Preference number: 4 (lower is better) Translates to: GQGAEACQETKLGAAFRCSEAPS*TSPGRC Trigger: ACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCT...GCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGTCCCACGGCACCGGGTaGCAGCAGCACAGAGCCCGG | + |
Preference number: 4 (lower is better) Translates to: GAEACQETKLGAAFRCTQSHGTG*QQHRAR Trigger: CCGGGCTCTGTGCTGCTGGCACCCGGTGCCGTGGGA...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CCA 90 bp | GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCA | + |
Preference number: 4 (lower is better) Translates to: GAEACQETKLGAAFRCTQAVAAT*SREPRS Trigger: TGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGC...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | GCTAGTCACAAGCCAAGACGCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTAGTTCAGGTCCTGCATaGGCTTCCGCTCGCGGCTGT | + |
Preference number: 4 (lower is better) Translates to: ASHKPRRGTHARTRPRSSSSGPA*ASARGC Trigger: ACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACT...AGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGCGTCTTGGCTTGTGACTAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGGCCAAGTTCAGGTCCTaGATGCGCTTCCGCTCGCGG | + |
Preference number: 4 (lower is better) Translates to: TERTRVTSSSETLGFPERAKFRS*MRFRSR Trigger: CCGCGAGCGGAAGCGCATGCAGGACCTGAACTTGGC...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | TGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGCCGGCGGGGACCAGATaGGGGAACTTGCACACCGCA | + |
Preference number: 4 (lower is better) Translates to: WGAALRPGSGSMPGNQAGPAGTR*GNLHTA Trigger: TGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGG...CCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CCA 90 bp | GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGAGACAGGTACTTGGTaGGGCGCAGCGTTTCGGGGG | + |
Preference number: 4 (lower is better) Translates to: GAEACQETKLGAAFRCTQETGTW*GAAFRG Trigger: CCCCCGAAACGCTGCGCCCCACCAAGTACCTGTCTC...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | AGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTaGGGATCCTCGCCCAACTCCGCTTACTTTAATGAG | + |
Preference number: 4 (lower is better) Translates to: SAFPPAARRVGG*GSSPNSAYFNE Trigger: CTCATTAAAGTAAGCGGAGTTGGGCGAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CCA 90 bp | CTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTTCTCGCGCGCAGGCTTaGGGAGAAGGGATGCGGTGG | + |
Preference number: 4 (lower is better) Translates to: LLGQGAEACQETKLGAAFSRAQA*GEGMRW Trigger: CCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGA...AAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGTTGCGCCGCAGCTGCTaGTGCTGCTGTTCCTCTTTG | + |
Preference number: 4 (lower is better) Translates to: TERTRVTSSSETLGFPERLRRSC*CCCSSL Trigger: CAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAA...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | TACCGGTGGCCTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGACAATCTTGGAGAGCTTaGGGCCCGGCGCGCCCTGGC | + |
Preference number: 4 (lower is better) Translates to: YRWPGLSRPPRSAWFGWRQSWRA*GPARPG Trigger: GCCAGGGCGCGCCGGGCCGCAAGCTCTCCAAGATTG...TCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCCACCGGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CCA 90 bp | GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGCTAGAGACAGGTACTTaGTGGGGCGCAGCGTTTCGG | + |
Preference number: 4 (lower is better) Translates to: ERKHARKPSWGQPFAAPRLETGT*WGAAFR Trigger: CCGAAACGCTGCGCCCCACCAAGTACCTGTCTCTAG...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | GGCCTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTaGGCTGGAGAGAGCAAGGGAGCCTGTGCGCTCAGG | + |
Preference number: 4 (lower is better) Translates to: GLGFLDLLDPHG*AGESKGACALR Trigger: CCTGAGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR TCA 90 bp | CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGATCCGCTCGCGGCTGTTaGTCTTGCGCCGCAGCTGCT | + |
Preference number: 4 (lower is better) Translates to: LGFLDLLDPHGLAGESKGSARGC*SCAAAA Trigger: AGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGA...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | ATCCCAAGCAACTACATCGCTCCTTGGAACACCCGCTaGGGTTATTTTAATTGCCAGGGAGTGGGGGCGGGG | + |
Preference number: 4 (lower is better) Translates to: IPSNYIAPWNTR*GYFNCQGVGAG Trigger: CCCCGCCCCCACTCCCTGGCAATTAAAATAACCCAAGCGGGTGTTCCAAGGAGCGATGTAGTTGCTTGGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CCA 90 bp | CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGACCCGCGCCACCAGCTaGGAGAGAGAACTGGCCGCA | + |
Preference number: 4 (lower is better) Translates to: PMAWNVVGILFSSKLKRWTRATS*ERELAA Trigger: TGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGT...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGATCTTGCGCCGCAGCTaGTGCTGCTGCTGTTCCTCT | + |
Preference number: 4 (lower is better) Translates to: PMAWNVVGILFSSKLKRWILRRS*CCCCSS Trigger: AGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGAT...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTATTGGAGAACTGGGCCTaGACCGCTGCCAAGCCCAGG | + |
Preference number: 4 (lower is better) Translates to: RGWNFVFKQAQTLVKLPLLENWA*TAAKPR Trigger: CCTGGGCTTGGCAGCGGTGCAGGCCCAGTTCTCCAA...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR GCA 90 bp | CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGA | + |
Preference number: 4 (lower is better) Translates to: RGWNFVFKQAQTLVKLPLPDAGT*TPHRSR Trigger: TCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGG...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | TTTAGTAAGTCCGAACACCGATGGCATGGAACGTGGTaGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGT | + |
Preference number: 4 (lower is better) Translates to: FSKSEHRWHGTW*EFCFQASSNVG Trigger: ACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGGTGTTCGGACTTACTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTaGGTTAAGCTACCTTTAGGGAAGTGGAGACTAAGT | + |
Preference number: 4 (lower is better) Translates to: RGWNFVFKQAQT*VKLPLGKWRLS Trigger: ACTTAGTCTCCACTTCCCTAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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3UTR CAA 72 bp | GAATCAAAGCAAGCTGGTGAAGATTATGCAATAATCTaGGGTAATTTCCTAACGCTAGTCACAAGCCAAGAC | + |
Preference number: 4 (lower is better) Translates to: ESKQAGEDYAII*GNFLTLVTSQD Trigger: GTCTTGGCTTGTGACTAGCGTTAGGAAATTACCCAAGATTATTGCATAATCTTCACCAGCTTGCTTTGATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 90 bp | GCACCGCTGCCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGAGGCCAGGGCTACCCGCGCCACCAG | + |
Preference number: 5 (lower is better) Translates to: APLPSPGRRGPDAGT*TPHRSRGQGYPRHQ Trigger: CTGGTGGCGCGGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGCAGCGGTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 90 bp | CGCTTCCGCTCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTGCTaGTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCTGGC | + |
Preference number: 5 (lower is better) Translates to: RFRSRLLILRRSCCC*CSSLASARAPPDSG Trigger: GCCAGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 90 bp | CTGCTGCTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCTaGCGCAGGTCCCCGAGGTTCAGCGAGCGGAGCTTCGGCCTTCTC | + |
Preference number: 5 (lower is better) Translates to: LLLFLFGVGPGAPGL*RRSPRFSERSFGLL Trigger: GAGAAGGCCGAAGCTCCGCTCGCTGAACCTCGGGGACCTGCGCCAGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CAA 90 bp | AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCGCAATCTTGGAGAGCTaGCGGCCCGGCGCGCCCTGG | + |
Preference number: 5 (lower is better) Translates to: KCQRLPACSAAGRRFGILAILES*RPGAPW Trigger: CCAGGGCGCGCCGGGCCGCAAGCTCTCCAAGATTGC...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 90 bp | AACTGGGCCTGCACCGCTGCCAAGCCCAGGCCGGCGGGGACCAGATaGGGGAACTTGCACACCGCACAGGAGCAGAGGCCAGGGCTACCC | + |
Preference number: 5 (lower is better) Translates to: NWACTAAKPRPAGTR*GNLHTAQEQRPGLP Trigger: GGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGCAGCGGTGCAGGCCCAGTT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 90 bp | CAGCTCATACAGCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTaGCCGCAACATGGTCGCGGGAGCCGCGTTCACACGCGCCTGGGA | + |
Preference number: 5 (lower is better) Translates to: QLIQRGPELHVSRPL*PQHGRGSRVHTRLG Trigger: TCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCTGTATGAGCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 90 bp | ATGCGCTTCCGCTCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTaGTGCTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCT | + |
Preference number: 5 (lower is better) Translates to: MRFRSRLLILRRSCC*CCSSLASARAPPDS Trigger: AGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCAT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 90 bp | GCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCACACGCGCCTGGGAAATCGCATAGT | + |
Preference number: 5 (lower is better) Translates to: ARPRAARLQAAVAAT*SREPRSHAPGKSHS Trigger: ACTATGCGATTTCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 90 bp | GAGCAGAGGCCAGGGCTACCCGCGCCACCAGCTGGGAGAGAGAACTaGCCGCACGGTGGCTCGTCGAGCGCTAGAGACAGGTACTTGGTG | + |
Preference number: 5 (lower is better) Translates to: EQRPGLPAPPAGREN*PHGGSSSARDRYLV Trigger: CACCAAGTACCTGTCTCTAGCGCTCGACGAGCCACCGTGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGTAGCCCTGGCCTCTGCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CAA 90 bp | TTTCTGGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGATTGGCTTCTCGCGCGCAGGCTaGGGGAGAAGGGATGCGGTG | + |
Preference number: 5 (lower is better) Translates to: FLGPALPRSRTRGRGKIGFSRAG*GRRDAV Trigger: CACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAA...GCCAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CAA 90 bp | CACCCACGCGCGCACGCGTCCACGGAGTTCTTCAGCCGCACTGCTGTGGTTAAGTTCCGCTCGCGGCTGTaGATCTTGCGCCGCAGCTGC | + |
Preference number: 5 (lower is better) Translates to: HPRAHASTEFFSRTAVVKFRSRL*ILRRSC Trigger: GCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAA...CTTAACCACAGCAGTGCGGCTGAAGAACTCCGTGGACGCGTGCGCGCGTGGGTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS-3UTR CAA 90 bp | TGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGCTAGAGACAGGTACTaGGTGGGGCGCAGCGTTTCG | + |
Preference number: 5 (lower is better) Translates to: WGAALRPGSGSMPGNQAGARDRY*VGRSVS Trigger: CGAAACGCTGCGCCCCACCAAGTACCTGTCTCTAGC...CCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 72 bp | CAGCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTaGCCGCAACATGGTCGCGGGAGCCGCGTTCACACG | + |
Preference number: 6 (lower is better) Translates to: QRGPELHVSRPL*PQHGRGSRVHT Trigger: CGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 72 bp | TCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTGCTaGTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCG | + |
Preference number: 6 (lower is better) Translates to: SRLLILRRSCCC*CSSLASARAPP Trigger: CGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS GCA 72 bp | CCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGAGGCCAGGGCTACCCG | + |
Preference number: 6 (lower is better) Translates to: PSPGRRGPDAGT*TPHRSRGQGYP Trigger: CGGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CAA 72 bp | GCCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTaGCACACCGCACAGGAGCAGAGGCCAGGGCTACCC | + |
Preference number: 6 (lower is better) Translates to: AKPRPAGTRCGN*HTAQEQRPGLP Trigger: GGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 72 bp | CGAGCTGCACGTCTCCAGGCCGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCACACGCGCCTGGGAAA | + |
Preference number: 6 (lower is better) Translates to: RAARLQAAVAAT*SREPRSHAPGK Trigger: TTTCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 72 bp | ACAGGAGCAGAGGCCAGGGCTACCCGCGCCACCAGCTaGGAGAGAGAACTGGCCGCACGGTGGCTCGTCGAG | + |
Preference number: 6 (lower is better) Translates to: TGAEARATRATS*ERELAARWLVE Trigger: CTCGACGAGCCACCGTGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGTAGCCCTGGCCTCTGCTCCTGT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CCA 72 bp | CAGCGAGCGGAGCTTCGGCCTTCTCGCGCGCAGGCTTaGGGAGAAGGGATGCGGTGGAAGAGGATGAGGATG | + |
Preference number: 6 (lower is better) Translates to: QRAELRPSRAQA*GEGMRWKRMRM Trigger: CATCCTCATCCTCTTCCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAAGGCCGAAGCTCCGCTCGCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CAA 72 bp | TCAGCGAGCGGAGCTTCGGCCTTCTCGCGCGCAGGCTaGGGGAGAAGGGATGCGGTGGAAGAGGATGAGGAT | + |
Preference number: 6 (lower is better) Translates to: SASGASAFSRAG*GRRDAVEEDED Trigger: ATCCTCATCCTCTTCCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAAGGCCGAAGCTCCGCTCGCTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |
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CDS CAA 72 bp | AAGTTCAGGTCCTGCATGCGCTTCCGCTCGCGGCTGTaGATCTTGCGCCGCAGCTGCTGCTGCTGCTGTTCC | + |
Preference number: 6 (lower is better) Translates to: KFRSCMRFRSRL*ILRRSCCCCCS Trigger: GGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACTT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056882.7 |