RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLIG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046160

Ensembl transcript IDs: ENSMUST00000056882.7

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGAGCCTGTaGGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGAC +
Preference number: 1 (lower is better)
Translates to: PPRSAWFGWREQGSL*AQALDKERTPLWVD
Trigger: GTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 90 bp TCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAAC +
Preference number: 1 (lower is better)
Translates to: SGPGQGKDAPLGRHC*GAALRPGSGSMPGN
Trigger: GTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 90 bp TACAGTCTGTCGTCTGGGAGAGAAGTCTGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGA +
Preference number: 1 (lower is better)
Translates to: YSLSSGREVWKCPPF*GQLCLDPGRGGAGR
Trigger: TCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 90 bp GCGGGGAAGAAGGCGCCCTACAGTCTGTCGTCTGGGAGAGAAGTCTaGAAATGTCCTCCTTTCTGGGGCCAGCTCTGCCTAGATCCAGGA +
Preference number: 1 (lower is better)
Translates to: AGKKAPYSLSSGREV*KCPPFWGQLCLDPG
Trigger: TCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTAGGGCGCCTTCTTCCCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR TCA 90 bp AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCACCCCTGCCAGTGGGTaGGTTGTGGTGGGGATGCGA +
Preference number: 2 (lower is better)
Translates to: KCQRLPACSAAGRRFGILTPASG*VVVGMR
Trigger: TCGCATCCCCACCACAACTCACCCACTGGCAGGGGT...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp GCTAGTCACAAGCCAAGACGCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTCCAGCTCGGAAACCCTaGGCTTTCCAGAGCGGCCCA +
Preference number: 2 (lower is better)
Translates to: ASHKPRRGTHARTRPRSSPARKP*AFQSGP
Trigger: TGGGCCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGG...AGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGCGTCTTGGCTTGTGACTAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR GCA 90 bp CACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGCCCATCCGGAGCAAGGGAGCCTGTaGGCTCAGGCCCTGGACAAG +
Preference number: 2 (lower is better)
Translates to: HPRNIQLGNPGLSRAAHPEQGSL*AQALDK
Trigger: CTTGTCCAGGGCCTGAGCGCACAGGCTCCCTTGCTC...CGGATGGGCCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGTGTCACCCCTGCCAGTaGGTGAGTTGTGGTGGGGAT +
Preference number: 2 (lower is better)
Translates to: ERKHARKPSWGQPFAAPRCHPCQ*VSCGGD
Trigger: ATCCCCACCACAACTCACCCACTGGCAGGGGTGACA...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGGAAAGGACGCCCCTCTaGGTAGACACTGTTGGGGAG +
Preference number: 2 (lower is better)
Translates to: TERTRVTSSSETLGFPERERTPL*VDTVGE
Trigger: CTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTC...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp GCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTTCAGCCGCACTGCTGTGGTCCTGAAAAACAGAACTaGGAGTGGAGAGGAACCTCT +
Preference number: 2 (lower is better)
Translates to: AAPTRARVHGVLQPHCCGPEKQN*EWRGTS
Trigger: AGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGG...ACCACAGCAGTGCGGCTGAAGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR GCA 90 bp ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGTTGGGTTATTTTAATTaGCAGGGAGTGGGGGCGGGG +
Preference number: 2 (lower is better)
Translates to: TERTRVTSSSETLGFPERLGYFN*QGVGAG
Trigger: CCCCGCCCCCACTCCCTGGCAATTAAAATAACCCAA...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR GCA 90 bp AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCTTAAGGAGCATAAACTaGAACAAAACACCTGGGCGA +
Preference number: 2 (lower is better)
Translates to: KCQRLPACSAAGRRFGILLRSIN*NKTPGR
Trigger: TCGCCCAGGTGTTTTGTTGCAGTTTATGCTCCTTAA...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGAT +
Preference number: 2 (lower is better)
Translates to: ERKHARKPSWGQPFAAPRKCPPF*GQLCLD
Trigger: ATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTT...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR GCA 90 bp CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGAGGGGGTTGTCACCCCTaGCAGTGGGTGAGTTGTGGT +
Preference number: 2 (lower is better)
Translates to: LGFLDLLDPHGLAGESKGGGCHP*QWVSCG
Trigger: ACCACAACTCACCCACTGGCAGGGGTGACAACCCCC...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAATTGCCAGGGAGTaGGGGCGGGGAAGAAGGCGC +
Preference number: 2 (lower is better)
Translates to: PMAWNVVGILFSSKLKRWLIARE*GRGRRR
Trigger: GCGCCTTCTTCCCCGCCCCCACTCCCTGGCAATTAA...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp AGTCCGAACACCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTAAACAGAACTGGGAGTaGAGAGGAACCTCTCCACTT +
Preference number: 2 (lower is better)
Translates to: SPNTDGMERGWNFVFKQAKQNWE*RGTSPL
Trigger: AAGTGGAGAGGTTCCTCTCCACTCCCAGTTCTGTTT...AGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGGTGTTCGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CCA 90 bp CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTACTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCA +
Preference number: 2 (lower is better)
Translates to: RGWNFVFKQAQTLVKLPLLGRHC*GAALRP
Trigger: TGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAG...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 90 bp GGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTaGGTTAAGCTACCTTTAGGGAAGTGGAGACTAAGTAAGGGTTTT +
Preference number: 2 (lower is better)
Translates to: GMERGWNFVFKQAQT*VKLPLGKWRLSKGF
Trigger: AAAACCCTTACTTAGTCTCCACTTCCCTAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR GCA 72 bp AGCCGCACTGCTGTGGTTAAGGACCAGCCTGTGAAGTaGCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGG +
Preference number: 3 (lower is better)
Translates to: SRTAVVKDQPVK*QRLPACSAAGR
Trigger: CCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTTCACAGGCTGGTCCTTAACCACAGCAGTGCGGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CAA 90 bp CCTGTGCGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTCCGCGGTGGTGGGGGTaGTCACCCCTGCCAGTGGGT +
Preference number: 3 (lower is better)
Translates to: PVRSGPGQGKDAPLGRHCPRWWG*SPLPVG
Trigger: ACCCACTGGCAGGGGTGACAACCCCCACCACCGCGG...ACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCACAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR TCA 72 bp TCTTCAGCCGCACTGCTGTGGTTAAGGACCAGCCTGTaGAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGG +
Preference number: 3 (lower is better)
Translates to: SSAALLWLRTSL*SASAFPPAARR
Trigger: CCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTTCACAGGCTGGTCCTTAACCACAGCAGTGCGGCTGAAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR GCA 72 bp GCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTaGACCCAGGGCAACCCCCTTATACCGCACCGGCCG +
Preference number: 3 (lower is better)
Translates to: ACQETKLGAAFR*TQGNPLIPHRP
Trigger: CGGCCGGTGCGGTATAAGGGGGTTGCCCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR GCA 72 bp GTTGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATaGCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGC +
Preference number: 3 (lower is better)
Translates to: VGEQLLGQGAEA*QETKLGAAFRC
Trigger: GCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp CGCGATGCTCACGGATACGAGAATAGCCCGCGGTGGTaGGGGTTGTCACCCCTGCCAGTGGGTGAGTTGTGG +
Preference number: 3 (lower is better)
Translates to: RDAHGYENSPRW*GLSPLPVGELW
Trigger: CCACAACTCACCCACTGGCAGGGGTGACAACCCCCACCACCGCGGGCTATTCTCGTATCCGTGAGCATCGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp TGCGCTCAGGCCCTGGACAAGGAAAGGACGCCCCTCTaGGTAGACACTGTTGGGGAGCAGCTCTTAGGCCAG +
Preference number: 3 (lower is better)
Translates to: CAQALDKERTPL*VDTVGEQLLGQ
Trigger: CTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCCAGGGCCTGAGCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR GCA 72 bp GAAGTCTGGAAATGTCCTCCTTTCTGGGGCCAGCTCTaGCTAGATCCAGGACGCGGGGGCGCGGGAAGATTG +
Preference number: 3 (lower is better)
Translates to: EVWKCPPFWGQL*LDPGRGGAGRL
Trigger: CAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp TCGTCTGGGAGAGAAGTCTGGAAATGTCCTCCTTTCTaGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGC +
Preference number: 3 (lower is better)
Translates to: SSGREVWKCPPF*GQLCLDPGRGG
Trigger: GCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp GGACAAGGAAAGGACGCCCCTCTGGGTAGACACTGTTaGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATG +
Preference number: 3 (lower is better)
Translates to: GQGKDAPLGRHC*GAALRPGSGSM
Trigger: CATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCAACAGTGTCTACCCAGAGGGGCGTCCTTTCCTTGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp CGGTGGCCTGGGCTTTCTAGACCTCCTAGATCCGCATaGTTTGGCTGGAGAGAGCAAGGGAGCCTGTGCGCT +
Preference number: 3 (lower is better)
Translates to: RWPGLSRPPRSA*FGWREQGSLCA
Trigger: AGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCCACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR-3UTR CAA 90 bp CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGACTGCCAGTGGGTGAGTaGTGGTGGGGATGCGAAGAC +
Preference number: 3 (lower is better)
Translates to: LGFLDLLDPHGLAGESKGLPVGE*WWGCED
Trigger: GTCTTCGCATCCCCACCACAACTCACCCACTGGCAG...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp AAGGCGCCCTACAGTCTGTCGTCTGGGAGAGAAGTCTaGAAATGTCCTCCTTTCTGGGGCCAGCTCTGCCTA +
Preference number: 3 (lower is better)
Translates to: KAPYSLSSGREV*KCPPFWGQLCL
Trigger: TAGGCAGAGCTGGCCCCAGAAAGGAGGACATTTCCAGACTTCTCTCCCAGACGACAGACTGTAGGGCGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CCA 72 bp AAACACCTGGGCGAGCCTGAAAAACAGAACTGGGAGTaGAGAGGAACCTCTCCACTTCGCATCCCCAACCAC +
Preference number: 3 (lower is better)
Translates to: KHLGEPEKQNWE*RGTSPLRIPNH
Trigger: GTGGTTGGGGATGCGAAGTGGAGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGGCTCGCCCAGGTGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR TCA 72 bp AGGAGCATAAACTGCAACAAAACACCTGGGCGAGCCTaGAAAACAGAACTGGGAGTGGAGAGGAACCTCTCC +
Preference number: 3 (lower is better)
Translates to: RSINCNKTPGRA*KTELGVERNLS
Trigger: GGAGAGGTTCCTCTCCACTCCCAGTTCTGTTTTTCAGGCTCGCCCAGGTGTTTTGTTGCAGTTTATGCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp CTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGATaGGCTGAGGTCGCGCTCCGCCCCGGGCCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: LCLDPGRGGAGR*AEVALRPGPSQ
Trigger: CTGGCTGGGCCCGGGGCGGAGCGCGACCTCAGCCAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp GGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCAGCGAGGCCCCGAGCTaGACGTCTCCAGGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: GQGAEACQETKLGAAFRCSEAPS*TSPGRC
Trigger: ACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCT...GCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGTCCCACGGCACCGGGTaGCAGCAGCACAGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: GAEACQETKLGAAFRCTQSHGTG*QQHRAR
Trigger: CCGGGCTCTGTGCTGCTGGCACCCGGTGCCGTGGGA...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CCA 90 bp GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCA +
Preference number: 4 (lower is better)
Translates to: GAEACQETKLGAAFRCTQAVAAT*SREPRS
Trigger: TGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGC...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp GCTAGTCACAAGCCAAGACGCGGCACCCACGCGCGCACGCGTCCACGGAGTTCTAGTTCAGGTCCTGCATaGGCTTCCGCTCGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: ASHKPRRGTHARTRPRSSSSGPA*ASARGC
Trigger: ACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACT...AGAACTCCGTGGACGCGTGCGCGCGTGGGTGCCGCGTCTTGGCTTGTGACTAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGGCCAAGTTCAGGTCCTaGATGCGCTTCCGCTCGCGG +
Preference number: 4 (lower is better)
Translates to: TERTRVTSSSETLGFPERAKFRS*MRFRSR
Trigger: CCGCGAGCGGAAGCGCATGCAGGACCTGAACTTGGC...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp TGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGCCGGCGGGGACCAGATaGGGGAACTTGCACACCGCA +
Preference number: 4 (lower is better)
Translates to: WGAALRPGSGSMPGNQAGPAGTR*GNLHTA
Trigger: TGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGG...CCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CCA 90 bp GGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGAGACAGGTACTTGGTaGGGCGCAGCGTTTCGGGGG +
Preference number: 4 (lower is better)
Translates to: GAEACQETKLGAAFRCTQETGTW*GAAFRG
Trigger: CCCCCGAAACGCTGCGCCCCACCAAGTACCTGTCTC...CTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp AGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTaGGGATCCTCGCCCAACTCCGCTTACTTTAATGAG +
Preference number: 4 (lower is better)
Translates to: SAFPPAARRVGG*GSSPNSAYFNE
Trigger: CTCATTAAAGTAAGCGGAGTTGGGCGAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CCA 90 bp CTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTTCTCGCGCGCAGGCTTaGGGAGAAGGGATGCGGTGG +
Preference number: 4 (lower is better)
Translates to: LLGQGAEACQETKLGAAFSRAQA*GEGMRW
Trigger: CCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGA...AAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp ACCGAGCGCACCCGCGTAACATCCAGCTCGGAAACCCTGGGCTTTCCAGAGCGGTTGCGCCGCAGCTGCTaGTGCTGCTGTTCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: TERTRVTSSSETLGFPERLRRSC*CCCSSL
Trigger: CAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAA...CCGCTCTGGAAAGCCCAGGGTTTCCGAGCTGGATGTTACGCGGGTGCGCTCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp TACCGGTGGCCTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGACAATCTTGGAGAGCTTaGGGCCCGGCGCGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: YRWPGLSRPPRSAWFGWRQSWRA*GPARPG
Trigger: GCCAGGGCGCGCCGGGCCGCAAGCTCTCCAAGATTG...TCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCCACCGGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CCA 90 bp GAGCGGAAGCATGCCAGGAAACCAAGCTGGGGGCAGCCTTTCGCTGCACCCAGGCTAGAGACAGGTACTTaGTGGGGCGCAGCGTTTCGG +
Preference number: 4 (lower is better)
Translates to: ERKHARKPSWGQPFAAPRLETGT*WGAAFR
Trigger: CCGAAACGCTGCGCCCCACCAAGTACCTGTCTCTAG...CCTGGGTGCAGCGAAAGGCTGCCCCCAGCTTGGTTTCCTGGCATGCTTCCGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp GGCCTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTaGGCTGGAGAGAGCAAGGGAGCCTGTGCGCTCAGG +
Preference number: 4 (lower is better)
Translates to: GLGFLDLLDPHG*AGESKGACALR
Trigger: CCTGAGCGCACAGGCTCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR TCA 90 bp CTGGGCTTTCTAGACCTCCTAGATCCGCATGGTTTGGCTGGAGAGAGCAAGGGATCCGCTCGCGGCTGTTaGTCTTGCGCCGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LGFLDLLDPHGLAGESKGSARGC*SCAAAA
Trigger: AGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGA...TCCCTTGCTCTCTCCAGCCAAACCATGCGGATCTAGGAGGTCTAGAAAGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp ATCCCAAGCAACTACATCGCTCCTTGGAACACCCGCTaGGGTTATTTTAATTGCCAGGGAGTGGGGGCGGGG +
Preference number: 4 (lower is better)
Translates to: IPSNYIAPWNTR*GYFNCQGVGAG
Trigger: CCCCGCCCCCACTCCCTGGCAATTAAAATAACCCAAGCGGGTGTTCCAAGGAGCGATGTAGTTGCTTGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CCA 90 bp CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGACCCGCGCCACCAGCTaGGAGAGAGAACTGGCCGCA +
Preference number: 4 (lower is better)
Translates to: PMAWNVVGILFSSKLKRWTRATS*ERELAA
Trigger: TGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGT...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp CCGATGGCATGGAACGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGATCTTGCGCCGCAGCTaGTGCTGCTGCTGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: PMAWNVVGILFSSKLKRWILRRS*CCCCSS
Trigger: AGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGAT...CCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTATTGGAGAACTGGGCCTaGACCGCTGCCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RGWNFVFKQAQTLVKLPLLENWA*TAAKPR
Trigger: CCTGGGCTTGGCAGCGGTGCAGGCCCAGTTCTCCAA...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR GCA 90 bp CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGTTAAGCTACCTTTACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGA +
Preference number: 4 (lower is better)
Translates to: RGWNFVFKQAQTLVKLPLPDAGT*TPHRSR
Trigger: TCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGG...TAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp TTTAGTAAGTCCGAACACCGATGGCATGGAACGTGGTaGGAATTTTGTTTTCAAGCAAGCTCAAACGTTGGT +
Preference number: 4 (lower is better)
Translates to: FSKSEHRWHGTW*EFCFQASSNVG
Trigger: ACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACGTTCCATGCCATCGGTGTTCGGACTTACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp CGTGGTTGGAATTTTGTTTTCAAGCAAGCTCAAACGTaGGTTAAGCTACCTTTAGGGAAGTGGAGACTAAGT +
Preference number: 4 (lower is better)
Translates to: RGWNFVFKQAQT*VKLPLGKWRLS
Trigger: ACTTAGTCTCCACTTCCCTAAAGGTAGCTTAACCAACGTTTGAGCTTGCTTGAAAACAAAATTCCAACCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
3UTR CAA 72 bp GAATCAAAGCAAGCTGGTGAAGATTATGCAATAATCTaGGGTAATTTCCTAACGCTAGTCACAAGCCAAGAC +
Preference number: 4 (lower is better)
Translates to: ESKQAGEDYAII*GNFLTLVTSQD
Trigger: GTCTTGGCTTGTGACTAGCGTTAGGAAATTACCCAAGATTATTGCATAATCTTCACCAGCTTGCTTTGATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 90 bp GCACCGCTGCCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGAGGCCAGGGCTACCCGCGCCACCAG +
Preference number: 5 (lower is better)
Translates to: APLPSPGRRGPDAGT*TPHRSRGQGYPRHQ
Trigger: CTGGTGGCGCGGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGCAGCGGTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 90 bp CGCTTCCGCTCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTGCTaGTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCTGGC +
Preference number: 5 (lower is better)
Translates to: RFRSRLLILRRSCCC*CSSLASARAPPDSG
Trigger: GCCAGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 90 bp CTGCTGCTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCTaGCGCAGGTCCCCGAGGTTCAGCGAGCGGAGCTTCGGCCTTCTC +
Preference number: 5 (lower is better)
Translates to: LLLFLFGVGPGAPGL*RRSPRFSERSFGLL
Trigger: GAGAAGGCCGAAGCTCCGCTCGCTGAACCTCGGGGACCTGCGCCAGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CAA 90 bp AAGTGCCAGCGCCTTCCCGCCTGCAGCGCGGCGGGTAGGCGGTTTGGGATCCTCGCAATCTTGGAGAGCTaGCGGCCCGGCGCGCCCTGG +
Preference number: 5 (lower is better)
Translates to: KCQRLPACSAAGRRFGILAILES*RPGAPW
Trigger: CCAGGGCGCGCCGGGCCGCAAGCTCTCCAAGATTGC...GAGGATCCCAAACCGCCTACCCGCCGCGCTGCAGGCGGGAAGGCGCTGGCACTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 90 bp AACTGGGCCTGCACCGCTGCCAAGCCCAGGCCGGCGGGGACCAGATaGGGGAACTTGCACACCGCACAGGAGCAGAGGCCAGGGCTACCC +
Preference number: 5 (lower is better)
Translates to: NWACTAAKPRPAGTR*GNLHTAQEQRPGLP
Trigger: GGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGCAGCGGTGCAGGCCCAGTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 90 bp CAGCTCATACAGCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTaGCCGCAACATGGTCGCGGGAGCCGCGTTCACACGCGCCTGGGA +
Preference number: 5 (lower is better)
Translates to: QLIQRGPELHVSRPL*PQHGRGSRVHTRLG
Trigger: TCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCTGTATGAGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 90 bp ATGCGCTTCCGCTCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTaGTGCTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCGGACTCT +
Preference number: 5 (lower is better)
Translates to: MRFRSRLLILRRSCC*CCSSLASARAPPDS
Trigger: AGAGTCCGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 90 bp GCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCACACGCGCCTGGGAAATCGCATAGT +
Preference number: 5 (lower is better)
Translates to: ARPRAARLQAAVAAT*SREPRSHAPGKSHS
Trigger: ACTATGCGATTTCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 90 bp GAGCAGAGGCCAGGGCTACCCGCGCCACCAGCTGGGAGAGAGAACTaGCCGCACGGTGGCTCGTCGAGCGCTAGAGACAGGTACTTGGTG +
Preference number: 5 (lower is better)
Translates to: EQRPGLPAPPAGREN*PHGGSSSARDRYLV
Trigger: CACCAAGTACCTGTCTCTAGCGCTCGACGAGCCACCGTGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGTAGCCCTGGCCTCTGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CAA 90 bp TTTCTGGGGCCAGCTCTGCCTAGATCCAGGACGCGGGGGCGCGGGAAGATTGGCTTCTCGCGCGCAGGCTaGGGGAGAAGGGATGCGGTG +
Preference number: 5 (lower is better)
Translates to: FLGPALPRSRTRGRGKIGFSRAG*GRRDAV
Trigger: CACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAA...GCCAATCTTCCCGCGCCCCCGCGTCCTGGATCTAGGCAGAGCTGGCCCCAGAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CAA 90 bp CACCCACGCGCGCACGCGTCCACGGAGTTCTTCAGCCGCACTGCTGTGGTTAAGTTCCGCTCGCGGCTGTaGATCTTGCGCCGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: HPRAHASTEFFSRTAVVKFRSRL*ILRRSC
Trigger: GCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAA...CTTAACCACAGCAGTGCGGCTGAAGAACTCCGTGGACGCGTGCGCGCGTGGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS-3UTR CAA 90 bp TGGGGAGCAGCTCTTAGGCCAGGGAGCGGAAGCATGCCAGGAAACCAAGCTGGGGCTAGAGACAGGTACTaGGTGGGGCGCAGCGTTTCG +
Preference number: 5 (lower is better)
Translates to: WGAALRPGSGSMPGNQAGARDRY*VGRSVS
Trigger: CGAAACGCTGCGCCCCACCAAGTACCTGTCTCTAGC...CCCAGCTTGGTTTCCTGGCATGCTTCCGCTCCCTGGCCTAAGAGCTGCTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 72 bp CAGCGAGGCCCCGAGCTGCACGTCTCCAGGCCGCTGTaGCCGCAACATGGTCGCGGGAGCCGCGTTCACACG +
Preference number: 6 (lower is better)
Translates to: QRGPELHVSRPL*PQHGRGSRVHT
Trigger: CGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCGGGGCCTCGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 72 bp TCGCGGCTGTTGATCTTGCGCCGCAGCTGCTGCTGCTaGTGTTCCTCTTTGGCGTCGGCCCGGGCGCCCCCG +
Preference number: 6 (lower is better)
Translates to: SRLLILRRSCCC*CSSLASARAPP
Trigger: CGGGGGCGCCCGGGCCGACGCCAAAGAGGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS GCA 72 bp CCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTTaGACACCGCACAGGAGCAGAGGCCAGGGCTACCCG +
Preference number: 6 (lower is better)
Translates to: PSPGRRGPDAGT*TPHRSRGQGYP
Trigger: CGGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CAA 72 bp GCCAAGCCCAGGCCGGCGGGGACCAGATGCGGGAACTaGCACACCGCACAGGAGCAGAGGCCAGGGCTACCC +
Preference number: 6 (lower is better)
Translates to: AKPRPAGTRCGN*HTAQEQRPGLP
Trigger: GGGTAGCCCTGGCCTCTGCTCCTGTGCGGTGTGCAAGTTCCCGCATCTGGTCCCCGCCGGCCTGGGCTTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 72 bp CGAGCTGCACGTCTCCAGGCCGCTGTGGCCGCAACATaGTCGCGGGAGCCGCGTTCACACGCGCCTGGGAAA +
Preference number: 6 (lower is better)
Translates to: RAARLQAAVAAT*SREPRSHAPGK
Trigger: TTTCCCAGGCGCGTGTGAACGCGGCTCCCGCGACCATGTTGCGGCCACAGCGGCCTGGAGACGTGCAGCTCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 72 bp ACAGGAGCAGAGGCCAGGGCTACCCGCGCCACCAGCTaGGAGAGAGAACTGGCCGCACGGTGGCTCGTCGAG +
Preference number: 6 (lower is better)
Translates to: TGAEARATRATS*ERELAARWLVE
Trigger: CTCGACGAGCCACCGTGCGGCCAGTTCTCTCTCCCAGCTGGTGGCGCGGGTAGCCCTGGCCTCTGCTCCTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CCA 72 bp CAGCGAGCGGAGCTTCGGCCTTCTCGCGCGCAGGCTTaGGGAGAAGGGATGCGGTGGAAGAGGATGAGGATG +
Preference number: 6 (lower is better)
Translates to: QRAELRPSRAQA*GEGMRWKRMRM
Trigger: CATCCTCATCCTCTTCCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAAGGCCGAAGCTCCGCTCGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CAA 72 bp TCAGCGAGCGGAGCTTCGGCCTTCTCGCGCGCAGGCTaGGGGAGAAGGGATGCGGTGGAAGAGGATGAGGAT +
Preference number: 6 (lower is better)
Translates to: SASGASAFSRAG*GRRDAVEEDED
Trigger: ATCCTCATCCTCTTCCACCGCATCCCTTCTCCCCAAGCCTGCGCGCGAGAAGGCCGAAGCTCCGCTCGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7
CDS CAA 72 bp AAGTTCAGGTCCTGCATGCGCTTCCGCTCGCGGCTGTaGATCTTGCGCCGCAGCTGCTGCTGCTGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: KFRSCMRFRSRL*ILRRSCCCCCS
Trigger: GGAACAGCAGCAGCAGCAGCTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAACTT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056882.7