RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR975 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043331

Ensembl transcript IDs: ENSMUST00000054067.4, ENSMUST00000216647.2

Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCAGGAAGGGGAGGTGGGAGTGGGTGGGTGGGTGGGTGGGTGGATaGATGGAGGTGTACCCTCATAGAAGCAGAGAGAGGGGTATGGGG +
Preference number: 1 (lower is better)
Translates to: ARKGRWEWVGGWVGG*MEVYPHRSRERGMG
Trigger: CCCCATACCCCTCTCTCTGCTTCTATGAGGGTACACCTCCATCCATCCACCCACCCACCCACCCACCCACTCCCACCTCCCCTTCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 90 bp GGGATGGCCTTGTCAGGCATCAGTAGGAGGAGAGGATCTTGGCCCTaGGAAAGTTCTAAGGCCCAGTGTAGAGGGATGCCAGGAAGGGGA +
Preference number: 1 (lower is better)
Translates to: GMALSGISRRRGSWP*ESSKAQCRGMPGRG
Trigger: TCCCCTTCCTGGCATCCCTCTACACTGGGCCTTAGAACTTTCCCAGGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAAGGCCATCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 90 bp GTAGCAGGGATGGCCTTGTCAGGCATCAGTAGGAGGAGAGGATCTTaGCCCTGGGAAAGTTCTAAGGCCCAGTGTAGAGGGATGCCAGGA +
Preference number: 1 (lower is better)
Translates to: VAGMALSGISRRRGS*PWESSKAQCRGMPG
Trigger: TCCTGGCATCCCTCTACACTGGGCCTTAGAACTTTCCCAGGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAAGGCCATCCCTGCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CAA 90 bp ATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTaGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTTTCGAAAAA +
Preference number: 2 (lower is better)
Translates to: MCAEGSCSSVVLPGQ*SARKTLPTHSPFEK
Trigger: TTTTTCGAAAGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CAA 90 bp ATGGAGGGACCCATGGCTCTAGCCACATATGTAGCAGGGATGGCCTaGTCAGGCATCAGTAGGAGGAGAGGATCTTGGCCCTGGGAAAGT +
Preference number: 2 (lower is better)
Translates to: MEGPMALATYVAGMA*SGISRRRGSWPWES
Trigger: ACTTTCCCAGGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAAGGCCATCCCTGCTACATATGTGGCTAGAGCCATGGGTCCCTCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR TCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCAGCTGCCCTGATTAGCTaGAGCTGTGTGCCTGGTGAG +
Preference number: 2 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSAALIS*SCVPGE
Trigger: CTCACCAGGCACACAGCTTCAGCTAATCAGGGCAGC...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CCA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCACCTGGTGAGGTGGCGTaGCCTGCTGTGCGTGGATGG +
Preference number: 2 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPPGEVA*PAVRGW
Trigger: CCATCCACGCACAGCAGGCCACGCCACCTCACCAGG...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCACCTGCTGTGCGTGGATaGGAACTGAGAGTATATAAG +
Preference number: 2 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSPAVRG*ELRVYK
Trigger: CTTATATACTCTCAGTTCCCATCCACGCACAGCAGG...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CCA 90 bp CAGATAACACCAGCAAGCAGAAAGGGAAGCATAATACAAGGGACCACTGAAGAGGTGAATCCAATTTGGTaGAGATATGCCCCTGCTGCC +
Preference number: 2 (lower is better)
Translates to: QITPASRKGSIIQGTTEEVNPIW*RYAPAA
Trigger: GGCAGCAGGGGCATATCTCCACCAAATTGGATTCAC...CTCTTCAGTGGTCCCTTGTATTATGCTTCCCTTTCTGCTTGCTGGTGTTATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CCA 90 bp CAGATAACACCAGCAAGCAGAAAGGGAAGCATAATACAAGGGACCACTGAAGAGAGGAGGAGAGGATCTTaGCCCTGGGAAAGTTCTAAG +
Preference number: 2 (lower is better)
Translates to: QITPASRKGSIIQGTTEERRRGS*PWESSK
Trigger: CTTAGAACTTTCCCAGGGCCAAGATCCTCTCCTCCT...CTCTTCAGTGGTCCCTTGTATTATGCTTCCCTTTCTGCTTGCTGGTGTTATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR TCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCAAAGAAGAAACAGGACTaGATAAATGTGTGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSKKKQD*INVCRR
Trigger: CCTTCTGCACACATTTATTCAGTCCTGTTTCTTCTT...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 72 bp GGGAGGTGGGAGTGGGTGGGTGGGTGGGTGGGTGGATaGATGGAGGTGTACCCTCATAGAAGCAGAGAGAGG +
Preference number: 3 (lower is better)
Translates to: GRWEWVGGWVGG*MEVYPHRSRER
Trigger: CCTCTCTCTGCTTCTATGAGGGTACACCTCCATCCATCCACCCACCCACCCACCCACCCACTCCCACCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR TCA 72 bp AAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTTaGGCGCGCGCAAGACCCTACCCACCCACTCCCCTT +
Preference number: 3 (lower is better)
Translates to: KDPVAASFFLAS*ARARPYPPTPL
Trigger: AAGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 72 bp GGTGGGAGTGGGTGGGTGGGTGGGTGGGTGGATGGATaGAGGTGTACCCTCATAGAAGCAGAGAGAGGGGTA +
Preference number: 3 (lower is better)
Translates to: GGSGWVGGWVDG*RCTLIEAERGV
Trigger: TACCCCTCTCTCTGCTTCTATGAGGGTACACCTCCATCCATCCACCCACCCACCCACCCACCCACTCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR TCA 72 bp ATTTGGTGGAGATATGCCCCTGCTGCCCTGATTAGCTaGAGCTGTGTGCCTGGTGAGGTGGCGTGGCCTGCT +
Preference number: 3 (lower is better)
Translates to: IWWRYAPAALIS*SCVPGEVAWPA
Trigger: AGCAGGCCACGCCACCTCACCAGGCACACAGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTCCACCAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 72 bp ATGGCCTTGTCAGGCATCAGTAGGAGGAGAGGATCTTaGCCCTGGGAAAGTTCTAAGGCCCAGTGTAGAGGG +
Preference number: 3 (lower is better)
Translates to: MALSGISRRRGS*PWESSKAQCRG
Trigger: CCCTCTACACTGGGCCTTAGAACTTTCCCAGGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAAGGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CCA 72 bp TTGTCAGGCATCAGTAGGAGGAGAGGATCTTGGCCCTaGGAAAGTTCTAAGGCCCAGTGTAGAGGGATGCCA +
Preference number: 3 (lower is better)
Translates to: LSGISRRRGSWP*ESSKAQCRGMP
Trigger: TGGCATCCCTCTACACTGGGCCTTAGAACTTTCCCAGGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CAA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCAGGGTATATATTAGGTTaGGGCAGGAAGGGGAGGAGG +
Preference number: 3 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPGYILG*GRKGRR
Trigger: CCTCCTCCCCTTCCTGCCCAAACCTAATATATACCC...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR TCA 72 bp TTGCACCTGACTTCCTCATATAAGACACAAACATCTTaGGTGCTGCGCAGGTGTACCAGGATACAGGTGAAT +
Preference number: 3 (lower is better)
Translates to: LHLTSSYKTQTS*VLRRCTRIQVN
Trigger: ATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGTCAGGTGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR-3UTR CAA 90 bp CAGATAACACCAGCAAGCAGAAAGGGAAGCATAATACAAGGGACCACTGAAGAGCTTTGTATACCAGGCTaGCCTCACACATATATAGAT +
Preference number: 3 (lower is better)
Translates to: QITPASRKGSIIQGTTEELCIPG*PHTYID
Trigger: ATCTATATATGTGTGAGGCAAGCCTGGTATACAAAG...CTCTTCAGTGGTCCCTTGTATTATGCTTCCCTTTCTGCTTGCTGGTGTTATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR TCA 72 bp ATACAAGGGACCACTGAAGAGCAGAATCAGTTACACTaGGTGCTTATGTCACAGCTCTTACTGTTTTTATTT +
Preference number: 3 (lower is better)
Translates to: IQGTTEEQNQLH*VLMSQLLLFLF
Trigger: AAATAAAAACAGTAAGAGCTGTGACATAAGCACTCAGTGTAACTGATTCTGCTCTTCAGTGGTCCCTTGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR GCA 72 bp AAGGGACCACTGAAGAGCAGAATCAGTTACACTGAGTaGTTATGTCACAGCTCTTACTGTTTTTATTTTAAT +
Preference number: 3 (lower is better)
Translates to: KGPLKSRISYTE*LCHSSYCFYFN
Trigger: ATTAAAATAAAAACAGTAAGAGCTGTGACATAAGCACTCAGTGTAACTGATTCTGCTCTTCAGTGGTCCCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp GTCGTTCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTAGCTCCCCATCCAGGTaGCCACAGCCATGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: VVLPGQLSARKTLPTHSPSSPSR*PQPWSH
Trigger: GTGGCTCCATGGCTGTGGCCACCTGGATGGGGAGCT...AGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CAA 72 bp GAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTaGAGCGCGCGCAAGACCCTACCCACCCACTCCCCT +
Preference number: 4 (lower is better)
Translates to: EGSCSSVVLPGQ*SARKTLPTHSP
Trigger: AGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR GCA 90 bp GTCGTTCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTAGAAGGCTCTGCGCCTaGCTTCAGAAGAACGGATCT +
Preference number: 4 (lower is better)
Translates to: VVLPGQLSARKTLPTHSPRRLCA*LQKNGS
Trigger: AGATCCGTTCTTCTGAAGGCAGGCGCAGAGCCTTCT...AGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp TCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTTTCGAGGATGGCCATCAGAATaGGTAGGTTTCCGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: SSWPVERAQDPTHPLPFRGWPSE*VGFREE
Trigger: CTCTTCCCGGAAACCTACTCATTCTGATGGCCATCC...TCGAAAGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp TCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTTTCGACAACACTTGAACCACTaGATCCAGCCAAGGACTGGA +
Preference number: 4 (lower is better)
Translates to: SSWPVERAQDPTHPLPFRQHLNH*IQPRTG
Trigger: TCCAGTCCTTGGCTGGATTCAGTGGTTCAAGTGTTG...TCGAAAGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp GTCGTTCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTGGAGAGCATCATCTTTaGGGAACTCACAGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: VVLPGQLSARKTLPTHSPGEHHL*GTHRRE
Trigger: TTCCCTTCTGTGAGTTCCCCAAAGATGATGCTCTCC...AGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp TCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTTTCGAAGAATGGATGTCAAGTaGGCACTGCAGGTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: SSWPVERAQDPTHPLPFRRMDVK*ALQVEK
Trigger: CTTCTCCACCTGCAGTGCCCACTTGACATCCATTCT...TCGAAAGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp GTCGTTCTTCCTGGCCAGTTGAGCGCGCGCAAGACCCTACCCACCCACTCCCCTCCCATGAACTCATTATaGCTGTGTACCTCAAAGGGT +
Preference number: 4 (lower is better)
Translates to: VVLPGQLSARKTLPTHSPPMNSL*LCTSKG
Trigger: ACCCTTTGAGGTACACAGTCATAATGAGTTCATGGG...AGGGGAGTGGGTGGGTAGGGTCTTGCGCGCGCTCAACTGGCCAGGAAGAACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CAA 72 bp CCCATGGCTCTAGCCACATATGTAGCAGGGATGGCCTaGTCAGGCATCAGTAGGAGGAGAGGATCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: PMALATYVAGMA*SGISRRRGSWP
Trigger: GGGCCAAGATCCTCTCCTCCTACTGATGCCTGACAAGGCCATCCCTGCTACATATGTGGCTAGAGCCATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR GCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCATGCCAGAGAGGTGTCTaGACAAGCCAGGGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSCQRGV*TSQGQH
Trigger: GTGCTGCCCCTGGCTTGTGCAGACACCTCTCTGGCA...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR GCA 90 bp CTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTGTGAGGACAGATGCGTaGAGACAGCTCCCCATCCAG +
Preference number: 4 (lower is better)
Translates to: LNKCVQKDPVAASFFLASVRTDA*RQLPIQ
Trigger: CTGGATGGGGAGCTGTCTGCACGCATCTGTCCTCAC...ACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACATTTATTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp CTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTTGGGTGTGTGAAGGCTaGCGGAAGTCAGGATGGCCA +
Preference number: 4 (lower is better)
Translates to: LNKCVQKDPVAASFFLASWVCEG*RKSGWP
Trigger: TGGCCATCCTGACTTCCGCCAGCCTTCACACACCCA...ACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACATTTATTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp CAGATAACACCAGCAAGCAGAAAGGGAAGCATAATACAAGGGACCACTGAAGAGAGGTGGCCACAGCCATaGAGCCACACACCCATGAAC +
Preference number: 4 (lower is better)
Translates to: QITPASRKGSIIQGTTEERWPQP*SHTPMN
Trigger: GTTCATGGGTGTGTGGCTCCATGGCTGTGGCCACCT...CTCTTCAGTGGTCCCTTGTATTATGCTTCCCTTTCTGCTTGCTGGTGTTATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR GCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCAGAAACTTACAGCTTGTaGCAGAGAGGTGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSETYSL*QRGVCT
Trigger: TGTGCAGACACCTCTCTGGCACAAGCTGTAAGTTTC...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCACATAGAAGAGCAGAATaGATGTCAAGTGGGCACTGC +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSHRRAE*MSSGHC
Trigger: GCAGTGCCCACTTGACATCCATTCTGCTCTTCTATG...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp CAGATAACACCAGCAAGCAGAAAGGGAAGCATAATACAAGGGACCACTGAAGAGGGTTTCCGGGAAGAGTaGGCAGGTAGAAGGACAAAA +
Preference number: 4 (lower is better)
Translates to: QITPASRKGSIIQGTTEEGFREE*AGRRTK
Trigger: TTTTGTCCTTCTACCTGCTCACTCTTCCCGGAAACC...CTCTTCAGTGGTCCCTTGTATTATGCTTCCCTTTCTGCTTGCTGGTGTTATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR GCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCACATCCCTTGTGTCAATaGCTTTCTCAAAGCCACCTT +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSHPLCQ*LSQSHL
Trigger: AAGGTGGCTTTGAGAAAGGCATTGACACAAGGGATG...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCAGTAAATGAGGACCACTaGGCCATAGAAGAGCAGAAT +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSVNEDH*AIEEQN
Trigger: ATTCTGCTCTTCTATGGCCCAGTGGTCCTCATTTAC...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCATCTTCAATATGGAGATaGCGATGCGAGAGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSSSIWR*RCESRK
Trigger: TTTCCTACTCTCGCATCGTCATCTCCATATTGAAGA...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp CTGAATAAATGTGTGCAGAAGGATCCTGTAGCAGCGTCGTTCTTCCTGGCCAGTATATTATTCAACACTTaGACCACTGAATCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: LNKCVQKDPVAASFFLASILFNT*TTESSQ
Trigger: TTGGCTGGATTCAGTGGTTCAAGTGTTGAATAATAT...ACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGCACACATTTATTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CCA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCACAGGGGCAGCACCACTaGAATGTCGCAGAAAAAGTT +
Preference number: 4 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPQGQHH*NVAEKV
Trigger: AACTTTTTCTGCGACATTCCAGTGGTGCTGCCCCTG...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCATGTGACTATGTCCAGTaGGGGAGAGCATCATCTTTG +
Preference number: 4 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPCDYVQ*GRASSL
Trigger: CAAAGATGATGCTCTCCCTCACTGGACATAGTCACA...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR TCA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCAGGAGCCACACACCCATaGACTCATTATGACTGTGTA +
Preference number: 4 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPGATHP*THYDCV
Trigger: TACACAGTCATAATGAGTTCATGGGTGTGTGGCTCC...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
3UTR CAA 72 bp CTCTGGCTGTCCATGAACTCTCTTTGTATACCAGGCTaGCCTCACACATATATAGATCAACCAAAGAGTACA +
Preference number: 4 (lower is better)
Translates to: LWLSMNSLCIPG*PHTYIDQPKST
Trigger: TGTACTCTTTGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGACAGCCAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CAA 90 bp CTAAAGGCGCCAGGGACTGTAGCTAAGTCATATGACTTGCACCTGACTTCCTCAGATGAAACTTACAGCTaGTGCCAGAGAGGTGTCTGC +
Preference number: 5 (lower is better)
Translates to: LKAPGTVAKSYDLHLTSSDETYS*CQRGVC
Trigger: GCAGACACCTCTCTGGCACAAGCTGTAAGTTTCATC...TGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTACAGTCCCTGGCGCCTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS-3UTR CAA 90 bp TCCATGAACTCTCTTTGTATACCAGGCTTGCCTCACACATATATAGATCAACCAGCCACCTTTACCTCTTaGTTTCTCAAGGAATATATC +
Preference number: 5 (lower is better)
Translates to: SMNSLCIPGLPHTYIDQPATFTS*FLKEYI
Trigger: GATATATTCCTTGAGAAACAAAGAGGTAAAGGTGGC...TGGTTGATCTATATATGTGTGAGGCAAGCCTGGTATACAAAGAGAGTTCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216647.2
CDS GCA 72 bp GTTGATGAAACTTACAGCTTGTGCCAGAGAGGTGTCTaGACAAGCCAGGGGCAGCACCACTGGAATGTCGCA +
Preference number: 6 (lower is better)
Translates to: VDETYSLCQRGV*TSQGQHHWNVA
Trigger: TGCGACATTCCAGTGGTGCTGCCCCTGGCTTGTGCAGACACCTCTCTGGCACAAGCTGTAAGTTTCATCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2
CDS CAA 72 bp CAGTGCGACAAGACCTACGTTGATGAAACTTACAGCTaGTGCCAGAGAGGTGTCTGCACAAGCCAGGGGCAG +
Preference number: 6 (lower is better)
Translates to: QCDKTYVDETYS*CQRGVCTSQGQ
Trigger: CTGCCCCTGGCTTGTGCAGACACCTCTCTGGCACAAGCTGTAAGTTTCATCAACGTAGGTCTTGTCGCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2
CDS CAA 90 bp GAAATGAGGATAAGGAGGAAGCATACCAGTGCGACAAGACCTACGTaGATGAAACTTACAGCTTGTGCCAGAGAGGTGTCTGCACAAGCC +
Preference number: 6 (lower is better)
Translates to: EMRIRRKHTSATRPT*MKLTACAREVSAQA
Trigger: GGCTTGTGCAGACACCTCTCTGGCACAAGCTGTAAGTTTCATCAACGTAGGTCTTGTCGCACTGGTATGCTTCCTCCTTATCCTCATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2
CDS CAA 72 bp ATAAGGAGGAAGCATACCAGTGCGACAAGACCTACGTaGATGAAACTTACAGCTTGTGCCAGAGAGGTGTCT +
Preference number: 6 (lower is better)
Translates to: IRRKHTSATRPT*MKLTACAREVS
Trigger: AGACACCTCTCTGGCACAAGCTGTAAGTTTCATCAACGTAGGTCTTGTCGCACTGGTATGCTTCCTCCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2
CDS TCA 72 bp GGAAGGAGTAACAATATTATTCAACACTTGAACCACTaGATCCAGCCAAGGACTGGAGGCAGGTCTGAGGTA +
Preference number: 6 (lower is better)
Translates to: GRSNNIIQHLNH*IQPRTGGRSEV
Trigger: TACCTCAGACCTGCCTCCAGTCCTTGGCTGGATTCAGTGGTTCAAGTGTTGAATAATATTGTTACTCCTTCC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2
CDS CAA 90 bp CGCATCCCTTGTGTCAATGCCTTTCTCAAAGCCACCTTTACCTCTTaGTTTCTCAAGGAATATATCAAAGGATTGAGGGAAGGAGTAACA +
Preference number: 6 (lower is better)
Translates to: RIPCVNAFLKATFTS*FLKEYIKGLREGVT
Trigger: TGTTACTCCTTCCCTCAATCCTTTGATATATTCCTTGAGAAACAAAGAGGTAAAGGTGGCTTTGAGAAAGGCATTGACACAAGGGATGCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054067.4
ENSMUST00000216647.2