RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR948 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057349

Ensembl transcript IDs: ENSMUST00000216132.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAAGATCTCCTTCCTGCATGAACAGAATAAAGAAAAATTTGTGGTaGACATCTACAATAGAGAGGGAGATAGGGTACAAGTGCTATGAA +
Preference number: 1 (lower is better)
Translates to: TRSPSCMNRIKKNLW*TSTIEREIGYKCYE
Trigger: TTCATAGCACTTGTACCCTATCTCCCTCTCTATTGTAGATGTCCACCACAAATTTTTCTTTATTCTGTTCATGCAGGAAGGAGATCTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR CCA 90 bp AACACAAGATCTCCTTCCTGCATGAACAGAATAAAGAAAAATTTGTaGTGGACATCTACAATAGAGAGGGAGATAGGGTACAAGTGCTAT +
Preference number: 1 (lower is better)
Translates to: NTRSPSCMNRIKKNL*WTSTIEREIGYKCY
Trigger: ATAGCACTTGTACCCTATCTCCCTCTCTATTGTAGATGTCCACCACAAATTTTTCTTTATTCTGTTCATGCAGGAAGGAGATCTTGTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR TCA 90 bp TTAGTTCAGAAATTCTGCCATCATTTTGAGAAATTTGGAAGTGTATaGAGCCAGATCCAACTAGAAAAGGTAATACAACATACCCAGGGG +
Preference number: 1 (lower is better)
Translates to: LVQKFCHHFEKFGSV*SQIQLEKVIQHTQG
Trigger: CCCCTGGGTATGTTGTATTACCTTTTCTAGTTGGATCTGGCTTCATACACTTCCAAATTTCTCAAAATGATGGCAGAATTTCTGAACTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCTGTATCTTCTATGTATaGCAGGGAAGCAGCACTGCA +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRICIFYV*QGSSTA
Trigger: TGCAGTGCTGCTTCCCTGTCATACATAGAAGATACA...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCTGGGAGAATGGCTGGTaGGAGATGAGGAAAATGATT +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIWENGW*EMRKMI
Trigger: AATCATTTTCCTCATCTCCCACCAGCCATTCTCCCA...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCGGGATGGGAAGTCAATaGAGAAATAGGAGAAGGGAA +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIGMGSQ*RNRRRE
Trigger: TTCCCTTCTCCTATTTCTCCATTGACTTCCCATCCC...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCCGTAACATGGAAAAATaGAATCCAAGTAGCCAAGGG +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIRNMEK*NPSSQG
Trigger: CCCTTGGCTACTTGGATTTCATTTTTCCATGTTACG...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCAATGGCAATGGAAGCTaGAGCTTTAGAAGACCATCA +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRINGNGS*SFRRPS
Trigger: TGATGGTCTTCTAAAGCTTCAGCTTCCATTGCCATT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCGAATACAGGAGCAAGTaGTTCAGAGTGATTCTAAAC +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIEYRSK*FRVILN
Trigger: GTTTAGAATCACTCTGAATCACTTGCTCCTGTATTC...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAATCTTTTTACGTCAGGTaGAAACAATTACAGACCTCC +
Preference number: 2 (lower is better)
Translates to: TQNIICYCSCPYCVLETKSFYVR*KQLQTS
Trigger: GGAGGTCTGTAATTGTTTCCACCTGACGTAAAAAGA...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCTCGAAGTGTCATAAATaGGTAATAGTAATGACAGGG +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRISKCHK*VIVMTG
Trigger: CCCTGTCATTACTATTACTCATTTATGACACTTCGA...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAAAAGAGGTTACTATTTaGGAGAGAACAGGAAGATCA +
Preference number: 2 (lower is better)
Translates to: TQNIICYCSCPYCVLETKKEVTI*ERTGRS
Trigger: TGATCTTCCTGTTCTCTCTCAAATAGTAACCTCTTT...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCTCCTATGGGTATATATaGAGGAAAGGAAAAGAGGTT +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRISYGYI*RKGKEV
Trigger: AACCTCTTTTCCTTTCCTTCATATATACCCATAGGA...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCATACAACATAGATTATaGTTCAGCCAAGTTCACTGC +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIIQHRL*FSQVHC
Trigger: GCAGTGAACTTGGCTGAACCATAATCTATGTTGTAT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR GCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCACCCAAAACATTATATaGTATTGCTCTTGCCCTTAT +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRITQNII*YCSCPY
Trigger: ATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR GCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCAGAAACATCCTATTTTaGCCAAACCATCAAAATCGA +
Preference number: 2 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIRNILF*PNHQNR
Trigger: TCGATTTTGATGGTTTGGGCAAAATAGGATGTTTCT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAGGCAAAATTCTTGCCTaGTTCTATAAACATAGTCAT +
Preference number: 2 (lower is better)
Translates to: TQNIICYCSCPYCVLETKGKILA*FYKHSH
Trigger: ATGACTATGTTTATAGAACCAGGCAAGAATTTTGCC...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR GCA 72 bp ACACAAACACACACACACCCCACCCAAAACATTATATaGTATTGCTCTTGCCCTTATTGTGTCCTAGAAACT +
Preference number: 3 (lower is better)
Translates to: TQTHTHPTQNII*YCSCPYCVLET
Trigger: AGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGTGGGGTGTGTGTGTGTTTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR CCA 72 bp TATGACCAAAGGTTTGACATTATACAACATAGATTATaGTTCAGCCAAGTTCACTGCACCTCTGCTCACAAT +
Preference number: 3 (lower is better)
Translates to: YDQRFDIIQHRL*FSQVHCTSAHN
Trigger: ATTGTGAGCAGAGGTGCAGTGAACTTGGCTGAACCATAATCTATGTTGTATAATGTCAAACCTTTGGTCATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CAA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCGAGGACTATTTGCTGTaGACTAGCTTTCGTAACATG +
Preference number: 3 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIEDYLL*TSFRNM
Trigger: CATGTTACGAAAGCTAGTCAACAGCAAATAGTCCTC...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR TCA 72 bp GTGGACATGTGGATTAGAGAAGAGATGAATGCTATATaGCGATCTTGTTCAGCACTTATTGTATATGCACAT +
Preference number: 3 (lower is better)
Translates to: VDMWIREEMNAI*RSCSALIVYAH
Trigger: ATGTGCATATACAATAAGTGCTGAACAAGATCGTCATATAGCATTCATCTCTTCTCTAATCCACATGTCCAC
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CAA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCAAAAGAGGTTACTATTaGAGAGAGAACAGGAAGATC +
Preference number: 3 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIKRGYY*RENRKI
Trigger: GATCTTCCTGTTCTCTCTCAAATAGTAACCTCTTTT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CAA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCCTGATATGGCTAATTTaGAAGTCTGTGTTGAGTTCT +
Preference number: 3 (lower is better)
Translates to: VMIDKSQLAQKASTVFRILIWLI*KSVLSS
Trigger: AGAACTCAACACAGACTTCAAAATTAGCCATATCAG...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR-3UTR CAA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCACTAACCCTCAATCATaGTTGACTGGATTACAAACT +
Preference number: 3 (lower is better)
Translates to: VMIDKSQLAQKASTVFRITNPQS*LTGLQT
Trigger: AGTTTGTAATCCAGTCAACAATGATTGAGGGTTAGT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR GCA 72 bp ATTGCCAGAAAGAAAAACAACACAAGATCTCCTTCCTaGATGAACAGAATAAAGAAAAATTTGTGGTGGACA +
Preference number: 3 (lower is better)
Translates to: IARKKNNTRSPS*MNRIKKNLWWT
Trigger: TGTCCACCACAAATTTTTCTTTATTCTGTTCATGCAGGAAGGAGATCTTGTGTTGTTTTTCTTTCTGGCAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR CCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCGAGGACACTTTCCCTTaGTCCACCAAACTCACTGAT +
Preference number: 4 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIEDTFP*STKLTD
Trigger: ATCAGTGAGTTTGGTGGACCAAGGGAAAGTGTCCTC...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR CAA 72 bp AGATCTCCTTCCTGCATGAACAGAATAAAGAAAAATTaGTGGTGGACATCTACAATAGAGAGGGAGATAGGG +
Preference number: 4 (lower is better)
Translates to: RSPSCMNRIKKN*WWTSTIEREIG
Trigger: CCCTATCTCCCTCTCTATTGTAGATGTCCACCACAAATTTTTCTTTATTCTGTTCATGCAGGAAGGAGATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR GCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCAGAACTCAGTCACTATaGAATGGTTTGCAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIRTQSL*NGLQLP
Trigger: TGGCAGCTGCAAACCATTGCATAGTGACTGAGTTCT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR GCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAACTGATCCCAATCAATaGAATCATCCCCAGGTTTCC +
Preference number: 4 (lower is better)
Translates to: TQNIICYCSCPYCVLETKTDPNQ*NHPQVS
Trigger: GGAAACCTGGGGATGATTGCATTGATTGGGATCAGT...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR CCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAATGGGTGTGTGCAAGTaGGAACTGATCCCAATCAAT +
Preference number: 4 (lower is better)
Translates to: TQNIICYCSCPYCVLETKMGVCK*ELIPIN
Trigger: ATTGATTGGGATCAGTTCCCACTTGCACACACCCAT...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR CAA 72 bp AAATTGATCTTAAGGCCCACTGAACAGGCAAAATTCTaGCCTGGTTCTATAAACATAGTCATCTATGAGATG +
Preference number: 4 (lower is better)
Translates to: KLILRPTEQAKF*PGSINIVIYEM
Trigger: CATCTCATAGATGACTATGTTTATAGAACCAGGCAAGAATTTTGCCTGTTCAGTGGGCCTTAAGATCAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
3UTR CAA 72 bp AATATGCAATTCCACTCATGGCCTATGACCAAAGGTTaGACATTATACAACATAGATTATGGTTCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: NMQFHSWPMTKG*TLYNIDYGSAK
Trigger: CTTGGCTGAACCATAATCTATGTTGTATAATGTCAAACCTTTGGTCATAGGCCATGAGTGGAATTGCATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR TCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAAACTTTTTGATTCTCTaGGAGTCCAGCCAAGAAGAA +
Preference number: 4 (lower is better)
Translates to: TQNIICYCSCPYCVLETKNFLIL*ESSQEE
Trigger: TTCTTCTTGGCTGGACTCTCAGAGAATCAAAAAGTT...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCATCCAGAGTAGGAGATaGTGTTCTTCTTTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIIQSRR*CSSLSE
Trigger: TTCTGACAAAGAAGAACATCATCTCCTACTCTGGAT...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCTTTTCAATGCAAGAGTaGCATCCTTATTCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIFSMQE*HPYSSS
Trigger: GCTTGAGGAATAAGGATGTCACTCTTGCATTGAAAA...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR GCA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAAATAGGTATTAGAGCATaGAAGTTTCAACAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: TQNIICYCSCPYCVLETKIGIRA*KFQQGK
Trigger: CTTCCCCTGTTGAAACTTGCATGCTCTAATACCTAT...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR TCA 90 bp GTTATGATAGATAAATCCCAACTAGCACAAAAAGCAAGTACTGTGTTCAGAATCCACAGAAATAGTGGTTaGTCACATTTAACTTGCAGA +
Preference number: 4 (lower is better)
Translates to: VMIDKSQLAQKASTVFRIHRNSG*SHLTCR
Trigger: TCTGCAAGTTAAATGTGATCAACCACTATTTCTGTG...GATTCTGAACACAGTACTTGCTTTTTGTGCTAGTTGGGATTTATCTATCATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2
CDS-3UTR CAA 90 bp ACCCAAAACATTATATGCTATTGCTCTTGCCCTTATTGTGTCCTAGAAACTAAACAAGTACTGAAGGCTTaGAACTTGCCCTCACTGGAG +
Preference number: 5 (lower is better)
Translates to: TQNIICYCSCPYCVLETKQVLKA*NLPSLE
Trigger: CTCCAGTGAGGGCAAGTTCAAAGCCTTCAGTACTTG...TTTAGTTTCTAGGACACAATAAGGGCAAGAGCAATAGCATATAATGTTTTGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216132.2