RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR905 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096794

Ensembl transcript IDs: ENSMUST00000051111.3, ENSMUST00000214377.2

Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTTGTAGATCAGGATGTCCTCAAACTCTGAAATCTGCTTGCCTCTaGCTCCCAAGTGCTGGTTTTAAAGGCGTGCACCACCACCACCCG +
Preference number: 1 (lower is better)
Translates to: LCRSGCPQTLKSACL*LPSAGFKGVHHHHP
Trigger: CGGGTGGTGGTGGTGCACGCCTTTAAAACCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCAGAGTTTGAGGACATCCTGATCTACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 90 bp ATCAATGCAGTGAAACCCATAAAAGAAACTCTAGTCAAGCCCCAGTaGCACACGTTCTGGTTGAGTCAGCTTGACAAGCCGAGAGGCTTG +
Preference number: 1 (lower is better)
Translates to: INAVKPIKETLVKPQ*HTFWLSQLDKPRGL
Trigger: CAAGCCTCTCGGCTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTGGGGCTTGACTAGAGTTTCTTTTATGGGTTTCACTGCATTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CCA 90 bp AAACCCATAAAAGAAACTCTAGTCAAGCCCCAGTGCCACACGTTCTaGTTGAGTCAGCTTGACAAGCCGAGAGGCTTGAAAGCTACTCTC +
Preference number: 1 (lower is better)
Translates to: KPIKETLVKPQCHTF*LSQLDKPRGLKATL
Trigger: GAGAGTAGCTTTCAAGCCTCTCGGCTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTGGGGCTTGACTAGAGTTTCTTTTATGGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR TCA 90 bp GCCTCCCAAGTGCTGGTTTTAAAGGCGTGCACCACCACCACCCGGTaGAAGCTTCATATTTTTAATCTTATGACACTCAGAAGCTACTTA +
Preference number: 1 (lower is better)
Translates to: ASQVLVLKACTTTTR*KLHIFNLMTLRSYL
Trigger: TAAGTAGCTTCTGAGTGTCATAAGATTAAAAATATGAAGCTTTCACCGGGTGGTGGTGGTGCACGCCTTTAAAACCAGCACTTGGGAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 90 bp GTTCATAGTAAACTGGTCATGTGCTATAATGAGATACATAATCAATaGAGTGAAACCCATAAAAGAAACTCTAGTCAAGCCCCAGTGCCA +
Preference number: 1 (lower is better)
Translates to: VHSKLVMCYNEIHNQ*SETHKRNSSQAPVP
Trigger: TGGCACTGGGGCTTGACTAGAGTTTCTTTTATGGGTTTCACTGCATTGATTATGTATCTCATTATAGCACATGACCAGTTTACTATGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CCA 90 bp AGACATGATCCAATTGTTCAAAATTCATTGCTCTTGCAGGAAACCTaGGTCTCTTTCAGGGAAATCACACAGAAACTCACAATCATCATT +
Preference number: 1 (lower is better)
Translates to: RHDPIVQNSLLLQET*VSFREITQKLTIII
Trigger: AATGATGATTGTGAGTTTCTGTGTGATTTCCCTGAAAGAGACCCAGGTTTCCTGCAAGAGCAATGAATTTTGAACAATTGGATCATGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 90 bp TCTTTGTACCTTGCTGGTATATCACCCAACTTCCTTATTGTCTTCTaGATAAAAAGTCTGATGCTCGATTTGACATTACATTCAGATTCC +
Preference number: 1 (lower is better)
Translates to: SLYLAGISPNFLIVF*IKSLMLDLTLHSDS
Trigger: GGAATCTGAATGTAATGTCAAATCGAGCATCAGACTTTTTATGCAGAAGACAATAAGGAAGTTGGGTGATATACCAGCAAGGTACAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CAA 90 bp CCCATAAAAGAAACTCTAGTCAAGCCCCAGTGCCACACGTTCTGGTaGAGTCAGCTTGACAAGCCGAGAGGCTTGAAAGCTACTCTCGAG +
Preference number: 2 (lower is better)
Translates to: PIKETLVKPQCHTFW*SQLDKPRGLKATLE
Trigger: CTCGAGAGTAGCTTTCAAGCCTCTCGGCTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTGGGGCTTGACTAGAGTTTCTTTTATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CCA 90 bp CCACAAGACCTCTCCTGTGTGCGTCTGTTTGTCATTCATCCTACGCTTTGTCCACTCTTGCAGGAAACCTaGGTCTCTTTCAGGGAAATC +
Preference number: 2 (lower is better)
Translates to: PQDLSCVRLFVIHPTLCPLLQET*VSFREI
Trigger: GATTTCCCTGAAAGAGACCCAGGTTTCCTGCAAGAG...TGGACAAAGCGTAGGATGAATGACAAACAGACGCACACAGGAGAGGTCTTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CCA 90 bp TGTGAAAGCCCTTGCCCTAAGAGAGTAAAGATCTCACACCTGGCTTCTAAGACTTCTAATGCCCTCTTCTaGCCTCTGTGGGTTTCTGTA +
Preference number: 2 (lower is better)
Translates to: CESPCPKRVKISHLASKTSNALF*PLWVSV
Trigger: TACAGAAACCCACAGAGGCCAGAAGAGGGCATTAGA...AGTCTTAGAAGCCAGGTGTGAGATCTTTACTCTCTTAGGGCAAGGGCTTTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CCA 90 bp AGTCAGCTTGACAAGCCGAGAGGCTTGAAAGCTACTCTCGAGGCAAAAGAGTTTTACACGTATTTACAATaGCCTAAGGGAAGGTGGACT +
Preference number: 2 (lower is better)
Translates to: SQLDKPRGLKATLEAKEFYTYLQ*PKGRWT
Trigger: AGTCCACCTTCCCTTAGGCCATTGTAAATACGTGTA...AAACTCTTTTGCCTCGAGAGTAGCTTTCAAGCCTCTCGGCTTGTCAAGCTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CAA 90 bp GTGGATGGATCCACGTGCTCTCTTTATTATAAGTGCCTTTTAAGATaGAATTCTGACCTAGCTAAAGCCTTCCGCCAGTGTTCCAACAGT +
Preference number: 2 (lower is better)
Translates to: VDGSTCSLYYKCLLR*NSDLAKAFRQCSNS
Trigger: ACTGTTGGAACACTGGCGGAAGGCTTTAGCTAGGTCAGAATTCAATCTTAAAAGGCACTTATAATAAAGAGAGCACGTGGATCCATCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR GCA 90 bp AACGTCCTTGAGCTAGACAGTGACATTCAGAATAGCCTCTGGTATTACACTATCGGTTGTGAAAGCCCTTaGCCTAAGAGAGTAAAGATC +
Preference number: 2 (lower is better)
Translates to: NVLELDSDIQNSLWYYTIGCESP*PKRVKI
Trigger: GATCTTTACTCTCTTAGGGCAAGGGCTTTCACAACC...GATAGTGTAATACCAGAGGCTATTCTGAATGTCACTGTCTAGCTCAAGGACGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR TCA 90 bp GGTATATCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATAGTCCAGTAACTACATaGGGAAGGACACTCGTTCAT +
Preference number: 2 (lower is better)
Translates to: GISPNFLIVFCIKSLMLDSPVTT*GRTLVH
Trigger: ATGAACGAGTGTCCTTCCTCATGTAGTTACTGGACT...ATCGAGCATCAGACTTTTTATGCAGAAGACAATAAGGAAGTTGGGTGATATACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR GCA 90 bp CTATCCCAGGTGGTTCCCATTAGACCTTCTGTGTTTGCATTCCTCTGTTTTATATTGTTCAAAATTCATTaGTCTTGCAGGAAACCTGGG +
Preference number: 2 (lower is better)
Translates to: LSQVVPIRPSVFAFLCFILFKIH*SCRKPG
Trigger: CCCAGGTTTCCTGCAAGAGCAATGAATTTTGAACAA...TATAAAACAGAGGAATGCAAACACAGAAGGTCTAATGGGAACCACCTGGGATAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CCA 90 bp GCTCTGTTACATTTTCTGTCAGTTTTGGTGGTAGATAAGCACATCAAGAATATACAGTGCCACACGTTCTaGTTGAGTCAGCTTGACAAG +
Preference number: 2 (lower is better)
Translates to: ALLHFLSVLVVDKHIKNIQCHTF*LSQLDK
Trigger: CTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTG...TATATTCTTGATGTGCTTATCTACCACCAAAACTGACAGAAAATGTAACAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CAA 90 bp CTGTGTTTGCATTCCTCTGTTTTATATAAGAATCCAGTAACCTCTTaGTACCTTGCTGGTATATCACCCAACTTCCTTATTGTCTTCTGC +
Preference number: 2 (lower is better)
Translates to: LCLHSSVLYKNPVTS*YLAGISPNFLIVFC
Trigger: GCAGAAGACAATAAGGAAGTTGGGTGATATACCAGCAAGGTACAAAGAGGTTACTGGATTCTTATATAAAACAGAGGAATGCAAACACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CAA 90 bp GTGTGTATGTTTGGGGGAATGCAATGCAACATTCTTTTTGCCACTTaGATTTCTTTAATAATATCCTCAGGAGTTCTCTCTGCAAATGTA +
Preference number: 2 (lower is better)
Translates to: VCMFGGMQCNILFAT*ISLIISSGVLSANV
Trigger: TACATTTGCAGAGAGAACTCCTGAGGATATTATTAAAGAAATCAAAGTGGCAAAAAGAATGTTGCATTGCATTCCCCCAAACATACACAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR GCA 90 bp GCTCTGTTACATTTTCTGTCAGTTTTGGTGGTAGATAAGCACATCAAGAATATAGTGGTTTTAGAGTATTaGATTATGCATGAGATGGTT +
Preference number: 2 (lower is better)
Translates to: ALLHFLSVLVVDKHIKNIVVLEY*IMHEMV
Trigger: AACCATCTCATGCATAATGCAATACTCTAAAACCAC...TATATTCTTGATGTGCTTATCTACCACCAAAACTGACAGAAAATGTAACAGAGC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 72 bp GACCCGTTCCATGCAGACAAAGGGGTCCAGAGGGTCTaGAGCACCCCAGGCAATCTAAAGTTGTGTCCAGCA +
Preference number: 3 (lower is better)
Translates to: DPFHADKGVQRV*STPGNLKLCPA
Trigger: TGCTGGACACAACTTTAGATTGCCTGGGGTGCTGCAGACCCTCTGGACCCCTTTGTCTGCATGGAACGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 72 bp TCAGGATGTCCTCAAACTCTGAAATCTGCTTGCCTCTaGCTCCCAAGTGCTGGTTTTAAAGGCGTGCACCAC +
Preference number: 3 (lower is better)
Translates to: SGCPQTLKSACL*LPSAGFKGVHH
Trigger: GTGGTGCACGCCTTTAAAACCAGCACTTGGGAGGCAGAGGCAAGCAGATTTCAGAGTTTGAGGACATCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR GCA 72 bp GTGAAACCCATAAAAGAAACTCTAGTCAAGCCCCAGTaGCACACGTTCTGGTTGAGTCAGCTTGACAAGCCG +
Preference number: 3 (lower is better)
Translates to: VKPIKETLVKPQ*HTFWLSQLDKP
Trigger: CGGCTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTGGGGCTTGACTAGAGTTTCTTTTATGGGTTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CCA 72 bp AAAGAAACTCTAGTCAAGCCCCAGTGCCACACGTTCTaGTTGAGTCAGCTTGACAAGCCGAGAGGCTTGAAA +
Preference number: 3 (lower is better)
Translates to: KETLVKPQCHTF*LSQLDKPRGLK
Trigger: TTTCAAGCCTCTCGGCTTGTCAAGCTGACTCAACCAGAACGTGTGGCACTGGGGCTTGACTAGAGTTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CAA 90 bp CCACAAGACCTCTCCTGTGTGCGTCTGTTTGTCATTCATCCTACGCTTTGTCCACAAAATTCATTGCTCTaGCAGGAAACCTGGGTCTCT +
Preference number: 3 (lower is better)
Translates to: PQDLSCVRLFVIHPTLCPQNSLL*QETWVS
Trigger: AGAGACCCAGGTTTCCTGCAAGAGCAATGAATTTTG...TGGACAAAGCGTAGGATGAATGACAAACAGACGCACACAGGAGAGGTCTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CAA 90 bp CTTGGTTGTGAAAGCCCTTGCCCTAAGAGAGTAAAGATCTCACACCTGGCTTCTCCAGGCAATCTAAAGTaGTGTCCAGCAAAGGAACAG +
Preference number: 3 (lower is better)
Translates to: LGCESPCPKRVKISHLASPGNLK*CPAKEQ
Trigger: CTGTTCCTTTGCTGGACACAACTTTAGATTGCCTGG...AGAAGCCAGGTGTGAGATCTTTACTCTCTTAGGGCAAGGGCTTTCACAACCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CCA 72 bp GTCCTTGAGCTAGACAGTGACATTCAGAATAGCCTCTaGTATTACACTATCAATAAAAGCCAAGTCGCTCCC +
Preference number: 3 (lower is better)
Translates to: VLELDSDIQNSL*YYTINKSQVAP
Trigger: GGGAGCGACTTGGCTTTTATTGATAGTGTAATACCAGAGGCTATTCTGAATGTCACTGTCTAGCTCAAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR TCA 72 bp GAAAACATGGGTCTGATGATAACCCAGAGGTTTCAGTaGACATCTGCCTTCACTATCTATGTCTTTTCTCTC +
Preference number: 3 (lower is better)
Translates to: ENMGLMITQRFQ*TSAFTIYVFSL
Trigger: GAGAGAAAAGACATAGATAGTGAAGGCAGATGTTCACTGAAACCTCTGGGTTATCATCAGACCCATGTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CCA 72 bp TTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTaGTTCCCATTAGACCTTCTGTGTTTGCATTCCTCT +
Preference number: 3 (lower is better)
Translates to: LIPVVNNEFYPR*FPLDLLCLHSS
Trigger: AGAGGAATGCAAACACAGAAGGTCTAATGGGAACCACCTGGGATAGAATTCATTGTTAACAACTGGGATCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR-3UTR CAA 90 bp GGTATATCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATATTGTTCAAAATTCATaGCTCTTGCAGGAAACCTGG +
Preference number: 3 (lower is better)
Translates to: GISPNFLIVFCIKSLMLDIVQNS*LLQETW
Trigger: CCAGGTTTCCTGCAAGAGCAATGAATTTTGAACAAT...ATCGAGCATCAGACTTTTTATGCAGAAGACAATAAGGAAGTTGGGTGATATACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR CCA 90 bp CTTGGTTGTGAAAGCCCTTGCCCTAAGAGAGTAAAGATCTCACACCTGGCTTCTATCCCGTGTGAGCCATaGCACCAGAAAATGCCATCA +
Preference number: 4 (lower is better)
Translates to: LGCESPCPKRVKISHLASIPCEP*HQKMPS
Trigger: TGATGGCATTTTCTGGTGCCATGGCTCACACGGGAT...AGAAGCCAGGTGTGAGATCTTTACTCTCTTAGGGCAAGGGCTTTCACAACCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR TCA 90 bp CTAAATTTTCCATTCCCGAGTCAGTCTAGTGGATGGATCCACGTGCTCTCTTTATCATTAGAAACAGGATaGAGAGGGGGCACTGGAGAT +
Preference number: 4 (lower is better)
Translates to: LNFPFPSQSSGWIHVLSLSLETG*RGGTGD
Trigger: ATCTCCAGTGCCCCCTCTTCATCCTGTTTCTAATGA...TAAAGAGAGCACGTGGATCCATCCACTAGACTGACTCGGGAATGGAAAATTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR TCA 90 bp CTAAATTTTCCATTCCCGAGTCAGTCTAGTGGATGGATCCACGTGCTCTCTTTAAAGCTAATCAAACCCTaGTTTCCCAGCACAGTGACC +
Preference number: 4 (lower is better)
Translates to: LNFPFPSQSSGWIHVLSLKLIKP*FPSTVT
Trigger: GGTCACTGTGCTGGGAAATCAGGGTTTGATTAGCTT...TAAAGAGAGCACGTGGATCCATCCACTAGACTGACTCGGGAATGGAAAATTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR TCA 90 bp TGTGAAAGCCCTTGCCCTAAGAGAGTAAAGATCTCACACCTGGCTTCTAAGACTTTTGCCTTCATTCATTaGCTCAGCAGAAGATGGTTT +
Preference number: 4 (lower is better)
Translates to: CESPCPKRVKISHLASKTFAFIH*LSRRWF
Trigger: AAACCATCTTCTGCTGAGTCAATGAATGAAGGCAAA...AGTCTTAGAAGCCAGGTGTGAGATCTTTACTCTCTTAGGGCAAGGGCTTTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR GCA 90 bp CTAAATTTTCCATTCCCGAGTCAGTCTAGTGGATGGATCCACGTGCTCTCTTTAGAAAAAGAAAAGCTGTaGCATGCATCCTCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: LNFPFPSQSSGWIHVLSLEKEKL*HASSVG
Trigger: TCCTACAGAGGATGCATGGCACAGCTTTTCTTTTTC...TAAAGAGAGCACGTGGATCCATCCACTAGACTGACTCGGGAATGGAAAATTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR TCA 90 bp CTCTTTGTACCTTGCTGGTATATCACCCAACTTCCTTATTGTCTTCTGCATAAATGTCCTCCTTGGAGCTaGTACGAAAAATACTTGCGA +
Preference number: 4 (lower is better)
Translates to: LFVPCWYITQLPYCLLHKCPPWS*YEKYLR
Trigger: TCGCAAGTATTTTTCGTATCAGCTCCAAGGAGGACA...TTTATGCAGAAGACAATAAGGAAGTTGGGTGATATACCAGCAAGGTACAAAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR TCA 90 bp GGTATATCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATGATTTCCCAGCACAGTaGCCACATACATCATTAGAA +
Preference number: 4 (lower is better)
Translates to: GISPNFLIVFCIKSLMLDDFPAQ*PHTSLE
Trigger: TTCTAATGATGTATGTGGTCACTGTGCTGGGAAATC...ATCGAGCATCAGACTTTTTATGCAGAAGACAATAAGGAAGTTGGGTGATATACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
3UTR CAA 72 bp TTTGGGGGAATGCAATGCAACATTCTTTTTGCCACTTaGATTTCTTTAATAATATCCTCAGGAGTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: FGGMQCNILFAT*ISLIISSGVLS
Trigger: AGAGAGAACTCCTGAGGATATTATTAAAGAAATCAAAGTGGCAAAAAGAATGTTGCATTGCATTCCCCCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR CAA 90 bp CCACAAGACCTCTCCTGTGTGCGTCTGTTTGTCATTCATCCTACGCTTTGTCCAAAGCTCTCCAGCATTTaGGGTGTGAAAACAGAAGAG +
Preference number: 5 (lower is better)
Translates to: PQDLSCVRLFVIHPTLCPKLSSI*GVKTEE
Trigger: CTCTTCTGTTTTCACACCCAAAATGCTGGAGAGCTT...TGGACAAAGCGTAGGATGAATGACAAACAGACGCACACAGGAGAGGTCTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS TCA 90 bp CATGCATCCCGTGTGAGCCATGGCACCAGAAAATGCCATCATGTATaGACTAAACATAAGGATCAAACATTGTTTAGGAGACATGACAAT +
Preference number: 5 (lower is better)
Translates to: HASRVSHGTRKCHHV*TKHKDQTLFRRHDN
Trigger: ATTGTCATGTCTCCTAAACAATGTTTGATCCTTATGTTTAGTTCATACATGATGGCATTTTCTGGTGCCATGGCTCACACGGGATGCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000051111.3
ENSMUST00000214377.2
CDS-3UTR CAA 90 bp GCTCTGTTACATTTTCTGTCAGTTTTGGTGGTAGATAAGCACATCAAGAATATATGGAGATCGGACTCCTaGGTTAATCCCACCAGAATG +
Preference number: 5 (lower is better)
Translates to: ALLHFLSVLVVDKHIKNIWRSDS*VNPTRM
Trigger: CATTCTGGTGGGATTAACCAAGGAGTCCGATCTCCA...TATATTCTTGATGTGCTTATCTACCACCAAAACTGACAGAAAATGTAACAGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2
CDS-3UTR CAA 90 bp CTATCCCAGGTGGTTCCCATTAGACCTTCTGTGTTTGCATTCCTCTGTTTTATAAAGATAGAGGAGATTTaGCCTTCATTCATTGACTCA +
Preference number: 5 (lower is better)
Translates to: LSQVVPIRPSVFAFLCFIKIEEI*PSFIDS
Trigger: TGAGTCAATGAATGAAGGCAAAATCTCCTCTATCTT...TATAAAACAGAGGAATGCAAACACAGAAGGTCTAATGGGAACCACCTGGGATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214377.2