RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR849 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052182

Ensembl transcript IDs: ENSMUST00000063923.4, ENSMUST00000217273.2

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCTTCCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTaGCCAGTCATTCTGCCCCATGGTACTACCTCAGCCTCAGCTACT +
Preference number: 1 (lower is better)
Translates to: SFLFLLPGTSAGPSL*PVILPHGTTSASAT
Trigger: AGTAGCTGAGGCTGAGGTAGTACCATGGGGCAGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGGAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 90 bp TTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTaGCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTA +
Preference number: 1 (lower is better)
Translates to: FCLVLLLVLLSAQSF*PMVLPQPQLLALYL
Trigger: TAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCAGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 90 bp AATTCACAAAGCCCTCTTCTCCTACTGTCTTCTATCTTCTTTGCATaGAAATCAAATTTCCTATTCCCCACAGTCCCTCTGCAAGATAAG +
Preference number: 1 (lower is better)
Translates to: NSQSPLLLLSSIFFA*KSNFLFPTVPLQDK
Trigger: CTTATCTTGCAGAGGGACTGTGGGGAATAGGAAATTTGATTTGCATGCAAAGAAGATAGAAGACAGTAGGAGAAGAGGGCTTTGTGAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 90 bp TCTTCTTTGCATGCAAATCAAATTTCCTATTCCCCACAGTCCCTCTaGAAGATAAGGGATTTCAGTTATGCTTGGTGTCACGTTTACTTT +
Preference number: 1 (lower is better)
Translates to: SSLHANQISYSPQSL*KIRDFSYAWCHVYF
Trigger: AAAGTAAACGTGACACCAAGCATAACTGAAATCCCTTATCTTGCAGAGGGACTGTGGGGAATAGGAAATTTGATTTGCATGCAAAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CCA 90 bp TGCAAGCAACTGCAAGGGGCAGATTTATGTATCACAACAGTATTTTaGGCCACTGTTATCTTAGCAGTAATGCATAATCTTAGCATTAAT +
Preference number: 1 (lower is better)
Translates to: CKQLQGADLCITTVF*ATVILAVMHNLSIN
Trigger: ATTAATGCTAAGATTATGCATTACTGCTAAGATAACAGTGGCCCAAAATACTGTTGTGATACATAAATCTGCCCCTTGCAGTTGCTTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 90 bp GCTTTCTGGTGCACAGAAATTCGCTTCTATATGAAACTATATAGATaGGGCAAGTATTCAATTCACAGGTATCTACCTATGGAATCAGAT +
Preference number: 1 (lower is better)
Translates to: AFWCTEIRFYMKLYR*GKYSIHRYLPMESD
Trigger: ATCTGATTCCATAGGTAGATACCTGTGAATTGAATACTTGCCTCATCTATATAGTTTCATATAGAAGCGAATTTCTGTGCACCAGAAAGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 90 bp TGCAAAATGTCAGATAACCTCTCCTATTTGGTTGACTGCATAATCTaGAATTTCTTATATCAAATGCAAGCAACTGCAAGGGGCAGATTT +
Preference number: 1 (lower is better)
Translates to: CKMSDNLSYLVDCII*NFLYQMQATARGRF
Trigger: AAATCTGCCCCTTGCAGTTGCTTGCATTTGATATAAGAAATTTCAGATTATGCAGTCAACCAAATAGGAGAGGTTATCTGACATTTTGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 90 bp AATTATCAGCCATTGCTTTCTGGTGCACAGAAATTCGCTTCTATATaGAACTATATAGATGAGGCAAGTATTCAATTCACAGGTATCTAC +
Preference number: 1 (lower is better)
Translates to: NYQPLLSGAQKFASI*NYIDEASIQFTGIY
Trigger: GTAGATACCTGTGAATTGAATACTTGCCTCATCTATATAGTTTCATATAGAAGCGAATTTCTGTGCACCAGAAAGCAATGGCTGATAATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTGAAGTCATGCAACCCTaGAAACTGTTTCCCACTCTT +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSEVMQP*KLFPTL
Trigger: AAGAGTGGGAAACAGTTTTCAGGGTTGCATGACTTC...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTAGATGTCAAGGACCTTaGAGGAGAACCTACAACTAC +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSRCQGP*RRTYNY
Trigger: GTAGTTGTAGGTTCTCCTCCAAGGTCCTTGACATCT...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTGAAGTTGATATTTCTTaGCTCTTCTCCCTCACATGC +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSEVDIS*LFSLTC
Trigger: GCATGTGAGGGAGAAGAGCCAAGAAATATCAACTTC...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTTCAAATGCAAGCAACTaGAAGGGGCAGATTTATGTA +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSSNASN*KGQIYV
Trigger: TACATAAATCTGCCCCTTGCAGTTGCTTGCATTTGA...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTCATAAGTTAAGAGAGTaGTCATTCATGAGTGGTGTC +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSHKLRE*SFMSGV
Trigger: GACACCACTCATGAATGAGCACTCTCTTAACTTATG...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTGACCCAGAATACATATaGCCTGTGCATATAAAAGTT +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSDPEYI*PVHIKV
Trigger: AACTTTTATATGCACAGGTCATATGTATTCTGGGTC...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTCTGTTTCCCACTCTTTaGAGTCAGCTCAGTTGTAGC +
Preference number: 2 (lower is better)
Translates to: CPMVLPQPQLLALYLTKALFPTL*SQLSCS
Trigger: GCTACAACTGAGCTGACTGCAAAGAGTGGGAAACAG...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTAACCAAAATTACATATaGGGCTTCTGTACTGGTTCA +
Preference number: 2 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSNQNYI*GFCTGS
Trigger: TGAACCAGTACAGAAGCCCCATATGTAATTTTGGTT...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 90 bp ACTCATTCTGAACTCAGTGTGAACAAGGTCCTCTCCCGTGGCAGCTaGGTTTTCCCTCTTTTTGAGCAGGTAAGGAAGAAACAAGTATTT +
Preference number: 2 (lower is better)
Translates to: THSELSVNKVLSRGS*VFPLFEQVRKKQVF
Trigger: AAATACTTGTTTCTTCCTTACCTGCTCAAAAAGAGGGAAAACCAAGCTGCCACGGGAGAGGACCTTGTTCACACTGAGTTCAGAATGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTATCTTGCCCAGAAGTTaGTATTTCTTGGCTCTTCTC +
Preference number: 2 (lower is better)
Translates to: CPMVLPQPQLLALYLTKAILPRS*YFLALL
Trigger: GAGAAGAGCCAAGAAATATCAACTTCTGGGCAAGAT...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTTCCCCACAGTCCCTCTaGAAGATAAGGGATTTCAGT +
Preference number: 2 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFSPQSL*KIRDFS
Trigger: ACTGAAATCCCTTATCTTGCAGAGGGACTGTGGGGA...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTATCAGTGGGTACAACTaGTGGCAATATCTCCTTCCT +
Preference number: 2 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFISGYN*WQYLLP
Trigger: AGGAAGGAGATATTGCCATCAGTTGTACCCACTGAT...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp GCCCAGAAGTTGATATTTCTTGGCTCTTCTCCCTCACATGCTTTTCATAAATCAGCCATTGCTTTCTGGTaGACAGAAATTCGCTTCTAT +
Preference number: 2 (lower is better)
Translates to: AQKLIFLGSSPSHAFHKSAIAFW*TEIRFY
Trigger: ATAGAAGCGAATTTCTGTGCACCAGAAAGCAATGGC...TGATTTATGAAAAGCATGTGAGGGAGAAGAGCCAAGAAATATCAACTTCTGGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGACATCCTAACACATTaGCAAAACTGTACATTATCA +
Preference number: 2 (lower is better)
Translates to: CPMVLPQPQLLALYLTKADILTH*QNCTLS
Trigger: TGATAATGTACAGTTTTGGCAATGTGTTAGGATGTC...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTTGTTTGATGAAAGCATaGCACAGTGGTACAAAAATA +
Preference number: 2 (lower is better)
Translates to: CPMVLPQPQLLALYLTKACLMKA*HSGTKI
Trigger: TATTTTTGTACCACTGTGCCATGCTTTCATCAAACA...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 90 bp ATAAAGACACAAAGATGTCTATATAGATTAAGGCTGTTGGCCATTTaGCTGGGGCAGTCCTTCAGCCAGTCACCTAAAATATACCTGAAT +
Preference number: 2 (lower is better)
Translates to: IKTQRCLYRLRLLAI*LGQSFSQSPKIYLN
Trigger: ATTCAGGTATATTTTAGGTGACTGGCTGAAGGACTGCCCCAGCAAAATGGCCAACAGCCTTAATCTATATAGACATCTTTGTGTCTTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTCACTGTGTTAGATTGTaGCTGGAAGAGAGTCAATTG +
Preference number: 2 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFHCVRL*LEESQL
Trigger: CAATTGACTCTCTTCCAGTCACAATCTAACACAGTG...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR TCA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTGGTTTTCCCTCTTTTTaGGCAGGTAAGGAAGAAACA +
Preference number: 2 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFGFPSF*AGKEET
Trigger: TGTTTCTTCCTTACCTGCTCAAAAAGAGGGAAAACC...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR GCA 90 bp GCAACTGCAAGGGGCAGATTTATGTATCACAACAGTATTTTGGGCCACTGTTATACAATTATCAGCCATTaGTTTCTGGTGCACAGAAAT +
Preference number: 2 (lower is better)
Translates to: ATARGRFMYHNSILGHCYTIISH*FLVHRN
Trigger: ATTTCTGTGCACCAGAAAGCAATGGCTGATAATTGT...ATAACAGTGGCCCAAAATACTGTTGTGATACATAAATCTGCCCCTTGCAGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTTTGTGGCACTATCAGTaGGTACAACTGATGGCAATA +
Preference number: 2 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFLWHYQ*VQLMAI
Trigger: TATTGCCATCAGTTGTACCCACTGATAGTGCCACAA...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CCA 90 bp TTAAAAACCAATCATGACTCAACACACTGTAGTCCCAGGATTTTCCAAATAAAGATCACAACAGTATTTTaGGCCACTGTTATCTTAGCA +
Preference number: 2 (lower is better)
Translates to: LKTNHDSTHCSPRIFQIKITTVF*ATVILA
Trigger: TGCTAAGATAACAGTGGCCCAAAATACTGTTGTGAT...CTTTATTTGGAAAATCCTGGGACTACAGTGTGTTGAGTCATGATTGGTTTTTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 72 bp GTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTaGCCCATGGTACTACCTCAGCCTCAGCTACTAGCT +
Preference number: 3 (lower is better)
Translates to: VLLLVLLSAQSF*PMVLPQPQLLA
Trigger: AGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCAGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp TGGGGCAGTCCTTCAGCCAGTCACCTAAAATATACCTaGATTTCCTGCCACTGTGTCTCTGCCATTTGGCTC +
Preference number: 3 (lower is better)
Translates to: WGSPSASHLKYT*ISCHCVSAIWL
Trigger: GAGCCAAATGGCAGAGACACAGTGGCAGGAAATTCAGGTATATTTTAGGTGACTGGCTGAAGGACTGCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CAA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTCTCTCCCGTGGCAGCTaGGTTTTCCCTCTTTTTGAG +
Preference number: 3 (lower is better)
Translates to: CPMVLPQPQLLALYLTKALSRGS*VFPLFE
Trigger: CTCAAAAAGAGGGAAAACCAAGCTGCCACGGGAGAG...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CCA 72 bp ATCGATCATCCTGCCAGCACTTGGTGCTGTGTTGCATaGCAACTAACACTGAAAATGCATACCTACATAGCT +
Preference number: 3 (lower is better)
Translates to: IDHPASTWCCVA*QLTLKMHTYIA
Trigger: AGCTATGTAGGTATGCATTTTCAGTGTTAGTTGCCATGCAACACAGCACCAAGTGCTGGCAGGATGATCGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp CTGTTTCCCACTCTTTGCAGTCAGCTCAGTTGTAGCTaGAAAAATTTAGTTGCCCTGGCCCTTAGTATGATG +
Preference number: 3 (lower is better)
Translates to: LFPTLCSQLSCS*KNLVALALSMM
Trigger: CATCATACTAAGGGCCAGGGCAACTAAATTTTTTCAGCTACAACTGAGCTGACTGCAAAGAGTGGGAAACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CAA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTAATCTTGCCCAGAAGTaGATATTTCTTGGCTCTTCT +
Preference number: 3 (lower is better)
Translates to: CPMVLPQPQLLALYLTKANLAQK*IFLGSS
Trigger: AGAAGAGCCAAGAAATATCAACTTCTGGGCAAGATT...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 72 bp GAGGAATGGCTGTCTTCCTTGAAGGACCCATCAAGCTaGCTCTCTTATAATGTTTTATTTCTCCTAACTGCA +
Preference number: 3 (lower is better)
Translates to: EEWLSSLKDPSS*LSYNVLFLLTA
Trigger: TGCAGTTAGGAGAAATAAAACATTATAAGAGAGGCAGCTTGATGGGTCCTTCAAGGAAGACAGCCATTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR GCA 72 bp AAATATCGATCATCCTGCCAGCACTTGGTGCTGTGTTaGATGGCAACTAACACTGAAAATGCATACCTACAT +
Preference number: 3 (lower is better)
Translates to: KYRSSCQHLVLC*MATNTENAYLH
Trigger: ATGTAGGTATGCATTTTCAGTGTTAGTTGCCATGCAACACAGCACCAAGTGCTGGCAGGATGATCGATATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp ACCCATGAATTCATGATTGCAATCTTGCCCAGAAGTTaGTATTTCTTGGCTCTTCTCCCTCACATGCTTTTC +
Preference number: 3 (lower is better)
Translates to: THEFMIAILPRS*YFLALLPHMLF
Trigger: GAAAAGCATGTGAGGGAGAAGAGCCAAGAAATATCAACTTCTGGGCAAGATTGCAATCATGAATTCATGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CAA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTATCATCAGTGACTGCTaGAGATGCATGAAACCCTGT +
Preference number: 3 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFIISDC*RCMKPC
Trigger: ACAGGGTTTCATGCATCTCAAGCAGTCACTGATGAT...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CAA 90 bp GCAAATCAAATTTCCTATTCCCCACAGTCCCTCTGCAAGATAAGGGATTTCAGTCGTTGTTCAATATACTaGCTGACATGCAAAATGTCA +
Preference number: 3 (lower is better)
Translates to: ANQISYSPQSLCKIRDFSRCSIY*LTCKMS
Trigger: TGACATTTTGCATGTCAGCAAGTATATTGAACAACG...ACTGAAATCCCTTATCTTGCAGAGGGACTGTGGGGAATAGGAAATTTGATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp TTTTTGTGTTTCTGTAAGAGGAATGGCTGTCTTCCTTaGAGGACCCATCAAGCTGCCTCTCTTATAATGTTT +
Preference number: 3 (lower is better)
Translates to: FLCFCKRNGCLP*RTHQAASLIMF
Trigger: AAACATTATAAGAGAGGCAGCTTGATGGGTCCTTCAAGGAAGACAGCCATTCCTCTTACAGAAACACAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR-3UTR CAA 90 bp ATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTGTATTTAACAATTATCAGCCATaGCTTTCTGGTGCACAGAAA +
Preference number: 3 (lower is better)
Translates to: MVLPQPQLLALYLTKAVFNNYQP*LSGAQK
Trigger: TTTCTGTGCACCAGAAAGCAATGGCTGATAATTGTT...AAATACAGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp AATTTAGTACATGCATCTGTGGTACCCATGAATTCATaGTTGCAATCTTGCCCAGAAGTTGATATTTCTTGG +
Preference number: 3 (lower is better)
Translates to: NLVHASVVPMNS*LQSCPEVDISW
Trigger: CCAAGAAATATCAACTTCTGGGCAAGATTGCAATCATGAATTCATGGGTACCACAGATGCATGTACTAAATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp TCAGATAACCTCTCCTATTTGGTTGACTGCATAATCTaGAATTTCTTATATCAAATGCAAGCAACTGCAAGG +
Preference number: 3 (lower is better)
Translates to: SDNLSYLVDCII*NFLYQMQATAR
Trigger: CCTTGCAGTTGCTTGCATTTGATATAAGAAATTTCAGATTATGCAGTCAACCAAATAGGAGAGGTTATCTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR TCA 72 bp TGCACAGAAATTCGCTTCTATATGAAACTATATAGATaGGGCAAGTATTCAATTCACAGGTATCTACCTATG +
Preference number: 3 (lower is better)
Translates to: CTEIRFYMKLYR*GKYSIHRYLPM
Trigger: CATAGGTAGATACCTGTGAATTGAATACTTGCCTCATCTATATAGTTTCATATAGAAGCGAATTTCTGTGCA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CCA 72 bp CAGTATGAAAGATGTGGCAAAGAGCAGTTGAATTGCTaGTTACTTGGAAAATTTTTAAGTATAACACACACA +
Preference number: 3 (lower is better)
Translates to: QYERCGKEQLNC*LLGKFLSITHT
Trigger: TGTGTGTGTTATACTTAAAAATTTTCCAAGTAACCAGCAATTCAACTGCTCTTTGCCACATCTTTCATACTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR TCA 90 bp CCTCTTCCTTCTGCCTGGTACTTCTGCTGGTCCTTCTCTCTGCCCAGTCATTCTAGTTTCCTAAGGTGGTaGTCAGATATATGGTCAGGA +
Preference number: 4 (lower is better)
Translates to: PLPSAWYFCWSFSLPSHSSFLRW*SDIWSG
Trigger: TCCTGACCATATATCTGATCACCACCTTAGGAAACT...AGAATGACTGGGCAGAGAGAAGGACCAGCAGAAGTACCAGGCAGAAGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 72 bp GAACTCAGTGTGAACAAGGTCCTCTCCCGTGGCAGCTaGGTTTTCCCTCTTTTTGAGCAGGTAAGGAAGAAA +
Preference number: 4 (lower is better)
Translates to: ELSVNKVLSRGS*VFPLFEQVRKK
Trigger: TTTCTTCCTTACCTGCTCAAAAAGAGGGAAAACCAAGCTGCCACGGGAGAGGACCTTGTTCACACTGAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR GCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTTGGAGAGTCTGTAAATaGAGAGCTTATGTGTACCCC +
Preference number: 4 (lower is better)
Translates to: CPMVLPQPQLLALYLTKAWRVCK*RAYVYP
Trigger: GGGGTACACATAAGCTCTGCATTTACAGACTCTCCA...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR CCA 90 bp TGCCCCATGGTACTACCTCAGCCTCAGCTACTAGCTCTTTATTTAACCAAAGCTAAAAGGTTGCAGTGTTaGATCATCACTAAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: CPMVLPQPQLLALYLTKAKRLQC*IITKPQ
Trigger: CTGGGGCTTAGTGATGATCCAACACTGCAACCTTTT...AGCTTTGGTTAAATAAAGAGCTAGTAGCTGAGGCTGAGGTAGTACCATGGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR TCA 90 bp AGCCAACTACACAATGCTAGAGATGTCAAGGACCTTGGAGGAGAACCTACAACTCAGCAAAATTCAAGATaGGATAGACTTGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: SQLHNARDVKDLGGEPTTQQNSR*DRLERG
Trigger: GCCTCTCTCAAGTCTATCTCATCTTGAATTTTGCTG...AGTTGTAGGTTCTCCTCCAAGGTCCTTGACATCTCTAGCATTGTGTAGTTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR CCA 90 bp GTAAACCTAGCCAACTACACAATGCTAGAGATGTCAAGGACCTTGGAGGAGAACAGCTCACAGAAGAAGTaGGGTATCTCAATTTCTGTG +
Preference number: 4 (lower is better)
Translates to: VNLANYTMLEMSRTLEENSSQKK*GISISV
Trigger: CACAGAAATTGAGATACCCCACTTCTTCTGTGAGCT...GTTCTCCTCCAAGGTCCTTGACATCTCTAGCATTGTGTAGTTGGCTAGGTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR GCA 90 bp AGCCAACTACACAATGCTAGAGATGTCAAGGACCTTGGAGGAGAACCTACAACTGTGTGGAACAAAGCATaGACAATACTAAGGAACAGA +
Preference number: 4 (lower is better)
Translates to: SQLHNARDVKDLGGEPTTVWNKA*TILRNR
Trigger: TCTGTTCCTTAGTATTGTGCATGCTTTGTTCCACAC...AGTTGTAGGTTCTCCTCCAAGGTCCTTGACATCTCTAGCATTGTGTAGTTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 72 bp CAAAGATGTCTATATAGATTAAGGCTGTTGGCCATTTaGCTGGGGCAGTCCTTCAGCCAGTCACCTAAAATA +
Preference number: 4 (lower is better)
Translates to: QRCLYRLRLLAI*LGQSFSQSPKI
Trigger: TATTTTAGGTGACTGGCTGAAGGACTGCCCCAGCAAAATGGCCAACAGCCTTAATCTATATAGACATCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS-3UTR GCA 90 bp AGCCAACTACACAATGCTAGAGATGTCAAGGACCTTGGAGGAGAACCTACAACTGTATCTCAATTTCTGTaGAGAAGGATAGCAGCAATA +
Preference number: 4 (lower is better)
Translates to: SQLHNARDVKDLGGEPTTVSQFL*RRIAAI
Trigger: TATTGCTGCTATCCTTCTGCACAGAAATTGAGATAC...AGTTGTAGGTTCTCCTCCAAGGTCCTTGACATCTCTAGCATTGTGTAGTTGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 72 bp ATAAGACCCCTCTTGTGTATTATGTGTCATCTATTTTaGTTAATACTCTCCCACATGAAGCTTTCTACCCTC +
Preference number: 4 (lower is better)
Translates to: IRPLLCIMCHLF*LILSHMKLSTL
Trigger: GAGGGTAGAAAGCTTCATGTGGGAGAGTATTAACAAAAATAGATGACACATAATACACAAGAGGGGTCTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
3UTR CAA 72 bp GATACAATATATGTGGGTGTAGGACATCCTAACACATaGCCAAAACTGTACATTATCAGTAACTCGTTAATA +
Preference number: 4 (lower is better)
Translates to: DTIYVGVGHPNT*PKLYIISNSLI
Trigger: TATTAACGAGTTACTGATAATGTACAGTTTTGGCAATGTGTTAGGATGTCCTACACCCACATATATTGTATC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS CCA 90 bp ATCTCAATTTCTGTGCAGAAGGATAGCAGCAATATCATCAAAGTGTaGAACAAAGCATGCACAATACTAAGGAACAGAGAGAAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: ISISVQKDSSNIIKV*NKACTILRNREKSS
Trigger: GCTGCTCTTCTCTCTGTTCCTTAGTATTGTGCATGCTTTGTTCCACACTTTGATGATATTGCTGCTATCCTTCTGCACAGAAATTGAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063923.4
ENSMUST00000217273.2
CDS-3UTR CAA 90 bp GCCCAGAAGTTGATATTTCTTGGCTCTTCTCCCTCACATGCTTTTCATAAATCAGGTAAAGATAAAAGGTaGCAGTGTTGGATCATCACT +
Preference number: 5 (lower is better)
Translates to: AQKLIFLGSSPSHAFHKSGKDKR*QCWIIT
Trigger: AGTGATGATCCAACACTGCAACCTTTTATCTTTACC...TGATTTATGAAAAGCATGTGAGGGAGAAGAGCCAAGAAATATCAACTTCTGGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217273.2
CDS CAA 90 bp CAGGAGACAGTTTTCTATACCAGCAAAATTCAAGATGAGATAGACTaGAGAGAGGCATGCTGTGTATGTGATGGTGTGATCCTCCCTCTG +
Preference number: 6 (lower is better)
Translates to: QETVFYTSKIQDEID*REACCVCDGVILPL
Trigger: CAGAGGGAGGATCACACCATCACATACACAGCATGCCTCTCTCAAGTCTATCTCATCTTGAATTTTGCTGGTATAGAAAACTGTCTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063923.4
ENSMUST00000217273.2
CDS GCA 72 bp GATAGCAGCAATATCATCAAAGTGTGGAACAAAGCATaGACAATACTAAGGAACAGAGAGAAGAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: DSSNIIKVWNKA*TILRNREKSSS
Trigger: GCTGCTGCTCTTCTCTCTGTTCCTTAGTATTGTGCATGCTTTGTTCCACACTTTGATGATATTGCTGCTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063923.4
ENSMUST00000217273.2
CDS CAA 72 bp GTTTTCTATACCAGCAAAATTCAAGATGAGATAGACTaGAGAGAGGCATGCTGTGTATGTGATGGTGTGATC +
Preference number: 6 (lower is better)
Translates to: VFYTSKIQDEID*REACCVCDGVI
Trigger: GATCACACCATCACATACACAGCATGCCTCTCTCAAGTCTATCTCATCTTGAATTTTGCTGGTATAGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063923.4
ENSMUST00000217273.2