RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR837 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000110621

Ensembl transcript IDs: ENSMUST00000212482.2, ENSMUST00000215699.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTGACCGTACTTGCTGCATTTCCAGAGAGTATCTTCACAGCACTATaGCTGATCAGGTTACAACAACCAGAGTTTCTGCTCAAGGGGATC +
Preference number: 1 (lower is better)
Translates to: LTVLAAFPESIFTAL*LIRLQQPEFLLKGI
Trigger: GATCCCCTTGAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGTGCTGTGAAGATACTCTCTGGAAATGCAGCAAGTACGGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 90 bp CCGTACTTGCTGCATTTCCAGAGAGTATCTTCACAGCACTATGGCTaGTCAGGTTACAACAACCAGAGTTTCTGCTCAAGGGGATCTAAA +
Preference number: 1 (lower is better)
Translates to: PYLLHFQRVSSQHYG*SGYNNQSFCSRGSK
Trigger: TTTAGATCCCCTTGAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGTGCTGTGAAGATACTCTCTGGAAATGCAGCAAGTACGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 90 bp AGAGAGAGAGTTAAAATTCATCTTCACAGCCCCTTTCCTGGGAGCTaGATAAAGAAGAAATTCTATATCCAGCTTAGAAACTATGAGGCA +
Preference number: 1 (lower is better)
Translates to: RERVKIHLHSPFPGS*IKKKFYIQLRNYEA
Trigger: TGCCTCATAGTTTCTAAGCTGGATATAGAATTTCTTCTTTATTCAGCTCCCAGGAAAGGGGCTGTGAAGATGAATTTTAACTCTCTCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 90 bp CTTAGAAACTATGAGGCAATGAGGGCTGAGATAATGGCTTTGAGATaGACCGTACTTGCTGCATTTCCAGAGAGTATCTTCACAGCACTA +
Preference number: 2 (lower is better)
Translates to: LRNYEAMRAEIMALR*TVLAAFPESIFTAL
Trigger: TAGTGCTGTGAAGATACTCTCTGGAAATGCAGCAAGTACGGTCAATCTCAAAGCCATTATCTCAGCCCTCATTGCCTCATAGTTTCTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 90 bp ATCCAGCTTAGAAACTATGAGGCAATGAGGGCTGAGATAATGGCTTaGAGATTGACCGTACTTGCTGCATTTCCAGAGAGTATCTTCACA +
Preference number: 2 (lower is better)
Translates to: IQLRNYEAMRAEIMA*RLTVLAAFPESIFT
Trigger: TGTGAAGATACTCTCTGGAAATGCAGCAAGTACGGTCAATCTCAAAGCCATTATCTCAGCCCTCATTGCCTCATAGTTTCTAAGCTGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR TCA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATCCCTTTCCTGGGAGCTaGATAAAGAAGAAATTCTAT +
Preference number: 2 (lower is better)
Translates to: LVSPDGASVLLCLETSLDPFPGS*IKKKFY
Trigger: ATAGAATTTCTTCTTTATTCAGCTCCCAGGAAAGGG...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 90 bp ATCCCTTCACATATTGTCCTTGACAGTAGACCTAAATCCAAGACATaGATGAAAATTTCCCATGACCAAGTAAAGGGTGCACACACACTA +
Preference number: 2 (lower is better)
Translates to: IPSHIVLDSRPKSKT*MKISHDQVKGAHTL
Trigger: TAGTGTGTGTGCACCCTTTACTTGGTCATGGGAAATTTTCATCAATGTCTTGGATTTAGGTCTACTGTCAAGGACAATATGTGAAGGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CCA 90 bp ACTATGGCTGATCAGGTTACAACAACCAGAGTTTCTGCTCAAGGGGATCTAAAACACCTCTGGCCAATATaGGAATTAAGCATATTCATT +
Preference number: 2 (lower is better)
Translates to: TMADQVTTTRVSAQGDLKHLWPI*ELSIFI
Trigger: AATGAATATGCTTAATTCCCATATTGGCCAGAGGTG...TTTTAGATCCCCTTGAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR TCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGACTGGGATTCAATCCTaGCCTCCTATTGGACAGTTA +
Preference number: 2 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKTGIQS*PPIGQL
Trigger: TAACTGTCCAATAGGAGGTCAGGATTGAATCCCAGT...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGTCTTATCCCCACCTCTaGCCAATATGGGAATTAAGC +
Preference number: 2 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKSYPHL*PIWELS
Trigger: GCTTAATTCCCATATTGGCCAGAGGTGGGGATAAGA...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGTCACAGCCCCTTTCCTaGGAGCTGAATAAAGAAGAA +
Preference number: 2 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKSQPLS*ELNKEE
Trigger: TTCTTCTTTATTCAGCTCCCAGGAAAGGGGCTGTGA...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR GCA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCGAGATTGACCGTACTTaGTGCATTTCCAGAGAGTAT +
Preference number: 2 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFEIDRT*CISREY
Trigger: ATACTCTCTGGAAATGCAGCAAGTACGGTCAATCTC...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR TCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGACTATCCTACAACTTTaGCTCACTCAAAAACCCAAG +
Preference number: 2 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKTILQL*LTQKPK
Trigger: CTTGGGTTTTTGAGTGAGTCAAAGTTGTAGGATAGT...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGATCCTGACCTCCTATTaGACAGTTACCAACCATTTA +
Preference number: 2 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKILTSY*TVTNHL
Trigger: TAAATGGTTGGTAACTGTCCAATAGGAGGTCAGGAT...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CCA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCATTGGCATTTTGACTTaGGAACTATCCTACAACTTT +
Preference number: 2 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFIGILT*ELSYNF
Trigger: AAAGTTGTAGGATAGTTCCCAAGTCAAAATGCCAAT...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CCA 72 bp TTGGTGCATAAAATAGTGGCTGCTCCACTTCAGGACTaGGATTCAATCCTGACCTCCTATTGGACAGTTACC +
Preference number: 3 (lower is better)
Translates to: LVHKIVAAPLQD*DSILTSYWTVT
Trigger: GGTAACTGTCCAATAGGAGGTCAGGATTGAATCCCAGTCCTGAAGTGGAGCAGCCACTATTTTATGCACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 72 bp CTGCATTTCCAGAGAGTATCTTCACAGCACTATGGCTaGTCAGGTTACAACAACCAGAGTTTCTGCTCAAGG +
Preference number: 3 (lower is better)
Translates to: LHFQRVSSQHYG*SGYNNQSFCSR
Trigger: CCTTGAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGTGCTGTGAAGATACTCTCTGGAAATGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CCA 72 bp CTTGCTGCATTTCCAGAGAGTATCTTCACAGCACTATaGCTGATCAGGTTACAACAACCAGAGTTTCTGCTC +
Preference number: 3 (lower is better)
Translates to: LAAFPESIFTAL*LIRLQQPEFLL
Trigger: GAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGTGCTGTGAAGATACTCTCTGGAAATGCAGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CAA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATCTTCACATATTGTCCTaGACAGTAGACCTAAATCCA +
Preference number: 3 (lower is better)
Translates to: LVSPDGASVLLCLETSLDLHILS*TVDLNP
Trigger: TGGATTTAGGTCTACTGTCAAGGACAATATGTGAAG...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CAA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGGCTGAGATAATGGCTTaGAGATTGACCGTACTTGCT +
Preference number: 3 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKAEIMA*RLTVLA
Trigger: AGCAAGTACGGTCAATCTCAAAGCCATTATCTCAGC...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 72 bp CATTGGCATTTTGACTTGGGAACTATCCTACAACTTTaGCTCACTCAAAAACCCAAGCCACAGATTAATCAT +
Preference number: 3 (lower is better)
Translates to: HWHFDLGTILQL*LTQKPKPQINH
Trigger: ATGATTAATCTGTGGCTTGGGTTTTTGAGTGAGTCAAAGTTGTAGGATAGTTCCCAAGTCAAAATGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 72 bp GTTAAAATTCATCTTCACAGCCCCTTTCCTGGGAGCTaGATAAAGAAGAAATTCTATATCCAGCTTAGAAAC +
Preference number: 3 (lower is better)
Translates to: VKIHLHSPFPGS*IKKKFYIQLRN
Trigger: GTTTCTAAGCTGGATATAGAATTTCTTCTTTATTCAGCTCCCAGGAAAGGGGCTGTGAAGATGAATTTTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR-3UTR CAA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCCCTAAATCCAAGACATaGATGAAAATTTCCCATGAC +
Preference number: 3 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFPKSKT*MKISHD
Trigger: GTCATGGGAAATTTTCATCAATGTCTTGGATTTAGG...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CCA 72 bp CTATATATTACAATACCCGAAGGCATTGCAAATAAATaGGCGACTGTTAAAGTCAATGCAATTGTAGACATG +
Preference number: 3 (lower is better)
Translates to: LYITIPEGIANK*ATVKVNAIVDM
Trigger: CATGTCTACAATTGCATTGACTTTAACAGTCGCCCATTTATTTGCAATGCCTTCGGGTATTGTAATATATAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 72 bp CATCTTCCTCCCTCAGTTAAAATAATCAATATGCCCTaGAAGGTATACCCACAGGTTTATACTATATGTTAT +
Preference number: 3 (lower is better)
Translates to: HLPPSVKIINMP*KVYPQVYTICY
Trigger: ATAACATATAGTATAAACCTGTGGGTATACCTTTCAGGGCATATTGATTATTTTAACTGAGGGAGGAAGATG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR TCA 72 bp TTAAACATGATTTCTTTCCTTGACTACCACAGGATCTaGGCCTACCTAATGTTCACAGTTTCAGTAAATATT +
Preference number: 3 (lower is better)
Translates to: LNMISFLDYHRI*AYLMFTVSVNI
Trigger: AATATTTACTGAAACTGTGAACATTAGGTAGGCTCAGATCCTGTGGTAGTCAAGGAAAGAAATCATGTTTAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR GCA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATGTGCAGAAGGACAAGTaGAGCACCATCAGACTATGC +
Preference number: 4 (lower is better)
Translates to: LVSPDGASVLLCLETSLDVQKDK*STIRLC
Trigger: GCATAGTCTGATGGTGCTGCACTTGTCCTTCTGCAC...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR CCA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGGGTTTGTGGAGGTaGGAGTCACAAATGATGGCT +
Preference number: 4 (lower is better)
Translates to: LVSPDGASVLLCLETSLDMGLWR*ESQMMA
Trigger: AGCCATCATTTGTGACTCCCACCTCCACAAACCCAT...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 72 bp TCCACTTCAGGACTGGGATTCAATCCTGACCTCCTATaGGACAGTTACCAACCATTTACAGTTCTAGTTCCA +
Preference number: 4 (lower is better)
Translates to: STSGLGFNPDLL*DSYQPFTVLVP
Trigger: TGGAACTAGAACTGTAAATGGTTGGTAACTGTCCAATAGGAGGTCAGGATTGAATCCCAGTCCTGAAGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 72 bp AGAAACTATGAGGCAATGAGGGCTGAGATAATGGCTTaGAGATTGACCGTACTTGCTGCATTTCCAGAGAGT +
Preference number: 4 (lower is better)
Translates to: RNYEAMRAEIMA*RLTVLAAFPES
Trigger: ACTCTCTGGAAATGCAGCAAGTACGGTCAATCTCAAAGCCATTATCTCAGCCCTCATTGCCTCATAGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR TCA 90 bp ACTATGGCTGATCAGGTTACAACAACCAGAGTTTCTGCTCAAGGGGATCTAAAAAAAAGAAGCCAAAGATaGAGGGCTGCAGCTCTATGT +
Preference number: 4 (lower is better)
Translates to: TMADQVTTTRVSAQGDLKKRSQR*RAAALC
Trigger: ACATAGAGCTGCAGCCCTTCATCTTTGGCTTCTTTT...TTTTAGATCCCCTTGAGCAGAAACTCTGGTTGTTGTAACCTGATCAGCCATAGT
43% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR TCA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATGCTAAAGTGATCCTCTaGTCCTGTGTTTGTACATTC +
Preference number: 4 (lower is better)
Translates to: LVSPDGASVLLCLETSLDAKVIL*SCVCTF
Trigger: GAATGTACAAACACAGGATCAGAGGATCACTTTAGC...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR CCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGGCCACAAAGCATCCCTaGCTCAGACAGCCAGCTAAA +
Preference number: 4 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKATKHP*LRQPAK
Trigger: TTTAGCTGGCTGTCTGAGCCAGGGATGCTTTGTGGC...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR GCA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCGGATTTCCAGGTCTGTaGAGAAGGACAAGTGCAGCA +
Preference number: 4 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFGFPGL*RRTSAA
Trigger: TGCTGCACTTGTCCTTCTGCACAGACCTGGAAATCC...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR TCA 90 bp CTAGTTTCACCAGATGGAGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATTCATCTGTGAGTCCATaGAGGAAAATATCCAAAACA +
Preference number: 4 (lower is better)
Translates to: LVSPDGASVLLCLETSLDSSVSP*RKISKT
Trigger: TGTTTTGGATATTTTCCTTCATGGACTCACAGATGA...ATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCTCCATCTGGTGAAACTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR TCA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCCAGAACAGGCAAGCTTaGGGATTTGTGCAATTTCAC +
Preference number: 4 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFQNRQA*GFVQFH
Trigger: GTGAAATTGCACAAATCCTCAAGCTTGCCTGTTCTG...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
3UTR CAA 72 bp CATATTGTCCTTGACAGTAGACCTAAATCCAAGACATaGATGAAAATTTCCCATGACCAAGTAAAGGGTGCA +
Preference number: 4 (lower is better)
Translates to: HIVLDSRPKSKT*MKISHDQVKGA
Trigger: TGCACCCTTTACTTGGTCATGGGAAATTTTCATCAATGTCTTGGATTTAGGTCTACTGTCAAGGACAATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR TCA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCGAAAACATTCAAAGATaGAACATACAGCCACAAAGC +
Preference number: 4 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFENIQR*NIQPQS
Trigger: GCTTTGTGGCTGTATGTTTCATCTTTGAATGTTTTC...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR CCA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGAAAGGGATTCAACATTaGAGGAACTATGGAATACAT +
Preference number: 4 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKKGIQH*RNYGIH
Trigger: ATGTATTCCATAGTTCCTCCAATGTTGAATCCCTTT...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS TCA 90 bp AACATACAGCCACAAAGCATCCCTGGCTCAGACAGCCAGCTAAAGTaGTCCTCTGATCCTGTGTTTGTACATTCACCAACAACTTTGGGA +
Preference number: 5 (lower is better)
Translates to: NIQPQSIPGSDSQLK*SSDPVFVHSPTTLG
Trigger: TCCCAAAGTTGTTGGTGAATGTACAAACACAGGATCAGAGGATCACTTTAGCTGGCTGTCTGAGCCAGGGATGCTTTGTGGCTGTATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212482.2
ENSMUST00000215699.2
CDS-3UTR CAA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCCCTCTGATCCTGTGTTaGTACATTCACCAACAACTT +
Preference number: 5 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFPLILC*YIHQQL
Trigger: AAGTTGTTGGTGAATGTACAAACACAGGATCAGAGG...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR CAA 90 bp AGCTTCTGTACTTCTGTGTCTAGAAACATCCCTAGATATGACAATTGTATTTTCCAAAGGGATTCAACATaGGAGGAACTATGGAATACA +
Preference number: 5 (lower is better)
Translates to: SFCTSVSRNIPRYDNCIFQRDST*EELWNT
Trigger: TGTATTCCATAGTTCCTCCAATGTTGAATCCCTTTG...GAAAATACAATTGTCATATCTAGGGATGTTTCTAGACACAGAAGTACAGAAGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS-3UTR CAA 90 bp GAAACAATTAAGAAAGGAAGTGTAGGAAGAACTGTGGGTGTATTCAATAGAAAGACAAATATCAGGATGTaGTTGATGAGGTTGTCAGAA +
Preference number: 5 (lower is better)
Translates to: ETIKKGSVGRTVGVFNRKTNIRM*LMRLSE
Trigger: TTCTGACAACCTCATCAACAACATCCTGATATTTGT...CTTTCTATTGAATACACCCACAGTTCTTCCTACACTTCCTTTCTTAATTGTTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215699.2
CDS TCA 72 bp CATCCCTGGCTCAGACAGCCAGCTAAAGTGATCCTCTaGTCCTGTGTTTGTACATTCACCAACAACTTTGGG +
Preference number: 6 (lower is better)
Translates to: HPWLRQPAKVIL*SCVCTFTNNFG
Trigger: CCCAAAGTTGTTGGTGAATGTACAAACACAGGATCAGAGGATCACTTTAGCTGGCTGTCTGAGCCAGGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000212482.2
ENSMUST00000215699.2