Pregenerated sensors for OLFR828 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078116Ensembl transcript IDs: ENSMUST00000104914.2, ENSMUST00000215380.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCAGGTTTGAGGATTCATaGTCGTTGTGTAGTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLRFEDS*SLCSSG Trigger: CCCTGAACTACACAACGATCATGAATCCTCAAACCT...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR TCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCAACACATTGCCCTATTaGTGTGCTTCCTCAAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLNTLPY*CASSRL Trigger: TAGCCTTGAGGAAGCACATCAATAGGGCAATGTGTT...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR CCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCATGGGTGTTTGGAGATaGGAGTCAGAACAGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLMGVWR*ESEQTV Trigger: AACTGTCTGTTCTGACTCCCATCTCCAAACACCCAT...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR GCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCGATGCTCTGATCCTGTaGATGAATGTTCACCAATGT | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLDALIL*MNVHQC Trigger: ACATTGGTGAACATTCATGCACAGGATCAGAGCATC...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR GCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCGGATTTCTAAGTTTGTaGAGAAGGACAACCGCAACA | + |
|
Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLGFLSL*RRTTAT Trigger: TGTTGCGGTTGTCCTTCTGCACAAACTTAGAAATCC...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR CCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCGGGATTCAACATTTGTaGGACCAATGTACACATCAC | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLGIQHL*DQCTHH Trigger: GTGATGTGTACATTGGTCCCACAAATGTTGAATCCC...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR TCA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCGCTAGCTTGATGACTTaGGCAAGTTCACAGAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: RILPPWFSSEIQVYSKCLASLMT*ASSQKN Trigger: ATTTTTCTGTGAACTTGCTCAAGTCATCAAGCTAGC...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS TCA 90 bp | ACCGCAACACCATCAGTCCAAGCAACCCACTATTCACAAGACTTATaGTTAGAGATAATAGAATTAGCAGACCACAGGTTTGAGGATTCA | + |
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Preference number: 5 (lower is better) Translates to: TATPSVQATHYSQDL*LEIIELADHRFEDS Trigger: TGAATCCTCAAACCTGTGGTCTGCTAATTCTATTATCTCTAATCATAAGTCTTGTGAATAGTGGGTTGCTTGGACTGATGGTGTTGCGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000104914.2 ENSMUST00000215380.3 |
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| CDS-3UTR CAA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCTGTTCACCAATGTCTTaGGAATTATGGTTGTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: RILPPWFSSEIQVYSKCLCSPMS*ELWLCL Trigger: TAAGCACAACCATAATTCCAAAGACATTGGTGAACA...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS-3UTR CAA 90 bp | AGAATCCTTCCCCCTTGGTTTAGTTCAGAAATCCAAGTCTACAGCAAATGTCTCCAAGGTAAAGCAGATTaGTGTAAGACAGCTAGTATA | + |
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Preference number: 5 (lower is better) Translates to: RILPPWFSSEIQVYSKCLQGKAD*CKTASI Trigger: TATACTAGCTGTCTTACACAAATCTGCTTTACCTTG...GAGACATTTGCTGTAGACTTGGATTTCTGAACTAAACCAAGGGGGAAGGATTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215380.3 |
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| CDS GCA 72 bp | CATGGAGGTGAACATGCTGAAGATGAGGGGCTTCAGTaGTATATCATCTGTTATTCCCATAAGAAAGAATTC | + |
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Preference number: 6 (lower is better) Translates to: HGGEHAEDEGLQ*YIICYSHKKEF Trigger: GAATTCTTTCTTATGGGAATAACAGATGATATAGCACTGAAGCCCCTCATCTTCAGCATGTTCACCTCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000104914.2 ENSMUST00000215380.3 |
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| CDS GCA 72 bp | TGTAAGACAGCTAGTATATGTGATGCTCTGATCCTGTaGATGAATGTTCACCAATGTCTTTGGAATTATGGT | + |
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Preference number: 6 (lower is better) Translates to: CKTASICDALIL*MNVHQCLWNYG Trigger: ACCATAATTCCAAAGACATTGGTGAACATTCATGCACAGGATCAGAGCATCACATATACTAGCTGTCTTACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000104914.2 ENSMUST00000215380.3 |
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