RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR775 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096220

Ensembl transcript IDs: ENSMUST00000214109.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGCAGGCTGGCACACATATAAACTCACAGAGACTATGGCAGCATaGATAGAGCTTACACACAACCTAGCCAGACATGGTTCCAGCACT +
Preference number: 1 (lower is better)
Translates to: TAGWHTYKLTETMAA*IELTHNLARHGSST
Trigger: AGTGCTGGAACCATGTCTGGCTAGGTTGTGTGTAAGCTCTATTCATGCTGCCATAGTCTCTGTGAGTTTATATGTGTGCCAGCCTGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 90 bp AGCAAAATCTTGCTAGTGTATGCAGTGGTGTCAGCGTTTGGAAGCTaGTTATGGGATGGATCCCTGGATATGGCAATCACTAGATGGTCC +
Preference number: 1 (lower is better)
Translates to: SKILLVYAVVSAFGS*LWDGSLDMAITRWS
Trigger: GGACCATCTAGTGATTGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCACTGCATACACTAGCAAGATTTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 90 bp CTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTaGTGGACAACTAGGCCATCTTTTGATACATATGCAGCTAGAGAC +
Preference number: 1 (lower is better)
Translates to: LGHIKFASPMGLSFQ*WTTRPSFDTYAARD
Trigger: GTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGTCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 90 bp CCAGTCTTGCTCAGCAATCATCGGGAAACTTCCTCCTATAGCAGATaGGAACAAATACAGAAACCCACAAAAGGAAAACGGGCAGACAGT +
Preference number: 1 (lower is better)
Translates to: PVLLSNHRETSSYSR*EQIQKPTKGKRADS
Trigger: ACTGTCTGCCCGTTTTCCTTTTGTGGGTTTCTGTATTTGTTCTCATCTGCTATAGGAGGAAGTTTCCCGATGATTGCTGAGCAAGACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp CCTGTGATCCATCCAATAGCTGATAGTGAGAATCCACTTCTGTGTTaGCTAGGCCCCGGCCCCGACATAGTCTCACAAGAGACAGCTATA +
Preference number: 2 (lower is better)
Translates to: PVIHPIADSENPLLC*LGPGPDIVSQETAI
Trigger: TATAGCTGTCTCTTGTGAGACTATGTCGGGGCCGGGGCCTAGCAAACACAGAAGTGGATTCTCACTATCAGCTATTGGATGGATCACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp GCTCCGGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTaGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCA +
Preference number: 2 (lower is better)
Translates to: APGYCLVHIVVPPIG*QFPLAPWVLSLAPP
Trigger: TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAAGCAGTACCCCGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp GTCCAATGGGCCTCTCTTTCCAGTGATGGACAACTAGGCCATCTTTaGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGCTTA +
Preference number: 2 (lower is better)
Translates to: VQWASLSSDGQLGHL*IHMQLETRAPGYCL
Trigger: TAAGCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGTCCATCACTGGAAAGAGAGGCCCATTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp TCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTaGGGTACTTTCTCTAGCTCCTCCATTAGGGGCCCTGTGATCCAT +
Preference number: 2 (lower is better)
Translates to: SYCCSTYRVAVPFSS*GTFSSSSIRGPVIH
Trigger: ATGGATCACAGGGCCCCTAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR TCA 90 bp GGAACTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGATCAGCGTTTGGAAGCTaGTTATGGGATGGATCCCTG +
Preference number: 2 (lower is better)
Translates to: GTGSYFVCNQRRKANTNRSAFGS*LWDGSL
Trigger: CAGGGATCCATCCCATAATCAGCTTCCAAACGCTGA...TCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR TCA 90 bp CTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGAGCTAACTGAGAAGTGGACATaGTCTCCCATCCCTAACCAA +
Preference number: 2 (lower is better)
Translates to: LEVTLCATREERQTLTELTEKWT*SPIPNQ
Trigger: TTGGTTAGGGATGGGAGATCATGTCCACTTCTCAGT...TAGCTCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR TCA 90 bp CTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGAGCTAGATTACAAGAGCCACTaGGGATGGAAGACACTAAGG +
Preference number: 2 (lower is better)
Translates to: LEVTLCATREERQTLTELDYKSH*GWKTLR
Trigger: CCTTAGTGTCTTCCATCCTCAGTGGCTCTTGTAATC...TAGCTCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp AGCCTTCACCCATATGGACTAGTGTTCATGGAACTGGAAGTTACTTaGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGAGCTATCA +
Preference number: 2 (lower is better)
Translates to: SLHPYGLVFMELEVT*CATREERQTLTELS
Trigger: TGATAGCTCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCCATGAACACTAGTCCATATGGGTGAAGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR GCA 90 bp GGAACTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGACTCAAAGACCAGTCTTaGTCAGCAATCATCGGGAAA +
Preference number: 2 (lower is better)
Translates to: GTGSYFVCNQRRKANTNRLKDQS*SAIIGK
Trigger: TTTCCCGATGATTGCTGAGCAAGACTGGTCTTTGAG...TCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR TCA 90 bp GGAACTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGATCCTCCTATAGCAGATaGGAACAAATACAGAAACCC +
Preference number: 2 (lower is better)
Translates to: GTGSYFVCNQRRKANTNRSSYSR*EQIQKP
Trigger: GGGTTTCTGTATTTGTTCTCATCTGCTATAGGAGGA...TCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR TCA 90 bp GGAACTGGAAGTTACTTTGTGTGCAACCAGAGAAGAAAGGCAAACACTAACAGATGTCTCTTTGTACCTTaGGCTGTTTCTTTATTTCAC +
Preference number: 2 (lower is better)
Translates to: GTGSYFVCNQRRKANTNRCLFVP*AVSLFH
Trigger: GTGAAATAAAGAAACAGCTCAAGGTACAAAGAGACA...TCTGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp CAACAACTCACAAAAGAAAAACAAATCTTCTCCAATGGCATATCATaGGGTACATGTACCACATCTAAGGGCAGAAACCATGCCTTGAAA +
Preference number: 2 (lower is better)
Translates to: QQLTKEKQIFSNGIS*GTCTTSKGRNHALK
Trigger: TTTCAAGGCATGGTTTCTGCCCTTAGATGTGGTACATGTACCCAATGATATGCCATTGGAGAAGATTTGTTTTTCTTTTGTGAGTTGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 90 bp TTCATGTCTGTCTGTCTGTCTATCTGTCTATCTCTGTCTGTCTCTTaGTACCTTGAGCTGTTTCTTTATTTCACTATTGTTAGTTTTGAG +
Preference number: 2 (lower is better)
Translates to: FMSVCLSICLSLSVS*YLELFLYFTIVSFE
Trigger: CTCAAAACTAACAATAGTGAAATAAAGAAACAGCTCAAGGTACAAAGAGACAGACAGAGATAGACAGATAGACAGACAGACAGACATGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR GCA 90 bp ATCTGTCTATCTCTGTCTGTCTCTTTGTACCTTGAGCTGTTTCTTTATTTCACTCATTTACATTTCCAATaGTATCCAAAAAGTCCCCCA +
Preference number: 2 (lower is better)
Translates to: ICLSLSVSLYLELFLYFTHLHFQ*YPKSPP
Trigger: TGGGGGACTTTTTGGATAGCATTGGAAATGTAAATG...AGTGAAATAAAGAAACAGCTCAAGGTACAAAGAGACAGACAGAGATAGACAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR CAA 90 bp CCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTAATCCACTTCTGTGTTaGCTAGGCCCCGGCCCCGAC +
Preference number: 3 (lower is better)
Translates to: PPIGLQFPLAPWVLSLAPNPLLC*LGPGPD
Trigger: GTCGGGGCCGGGGCCTAGCAAACACAGAAGTGGATT...AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp CTAGCCAGACATGGTTCCAGCACTGAGAAGTGGACATaGTCTCCCATCCCTAACCAAGAGGCTATCTCCCCT +
Preference number: 3 (lower is better)
Translates to: LARHGSSTEKWT*SPIPNQEAISP
Trigger: AGGGGAGATAGCCTCTTGGTTAGGGATGGGAGATCATGTCCACTTCTCAGTGCTGGAACCATGTCTGGCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR CAA 90 bp CCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCTTTCAGCAAAATCTaGCTAGTGTATGCAGTGGTG +
Preference number: 3 (lower is better)
Translates to: PPIGLQFPLAPWVLSLAPPFSKI*LVYAVV
Trigger: CACCACTGCATACACTAGCAAGATTTTGCTGAAAGG...AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp TTGCTAGTGTATGCAGTGGTGTCAGCGTTTGGAAGCTaGTTATGGGATGGATCCCTGGATATGGCAATCACT +
Preference number: 3 (lower is better)
Translates to: LLVYAVVSAFGS*LWDGSLDMAIT
Trigger: AGTGATTGCCATATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCACTGCATACACTAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CCA 72 bp ACACTAAGGAGACAATGTCTTCAAGACACAGCAGGCTaGCACACATATAAACTCACAGAGACTATGGCAGCA +
Preference number: 3 (lower is better)
Translates to: TLRRQCLQDTAG*HTYKLTETMAA
Trigger: TGCTGCCATAGTCTCTGTGAGTTTATATGTGTGCCAGCCTGCTGTGTCTTGAAGACATTGTCTCCTTAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp TGGCACACATATAAACTCACAGAGACTATGGCAGCATaGATAGAGCTTACACACAACCTAGCCAGACATGGT +
Preference number: 3 (lower is better)
Translates to: WHTYKLTETMAA*IELTHNLARHG
Trigger: ACCATGTCTGGCTAGGTTGTGTGTAAGCTCTATTCATGCTGCCATAGTCTCTGTGAGTTTATATGTGTGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR GCA 72 bp ATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATaGAGTGGTGTCAGCGTTTGGAAGCTGATTATGGGA +
Preference number: 3 (lower is better)
Translates to: ISGSFQQNLASV*SGVSVWKLIMG
Trigger: TCCCATAATCAGCTTCCAAACGCTGACACCACTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR GCA 72 bp ATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTaGTTAGTTCATATTGTTGTTCCACCTATAGGGTTG +
Preference number: 3 (lower is better)
Translates to: IHMQLETRAPGY*LVHIVVPPIGL
Trigger: CAACCCTATAGGTGGAACAACAATATGAACTAAGCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CCA 72 bp TTATGGGATGGATCCCTGGATATGGCAATCACTAGATaGTCCATCCTTTCGTCACAGCTCCAAATTTTGTCT +
Preference number: 3 (lower is better)
Translates to: LWDGSLDMAITR*SILSSQLQILS
Trigger: AGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATCCAGGGATCCATCCCATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp CTCAGCAATCATCGGGAAACTTCCTCCTATAGCAGATaGGAACAAATACAGAAACCCACAAAAGGAAAACGG +
Preference number: 3 (lower is better)
Translates to: LSNHRETSSYSR*EQIQKPTKGKR
Trigger: CCGTTTTCCTTTTGTGGGTTTCTGTATTTGTTCTCATCTGCTATAGGAGGAAGTTTCCCGATGATTGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR-3UTR CAA 90 bp ATCTGTCTATCTCTGTCTGTCTCTTTGTACCTTGAGCTGTTTCTTTATTTCACTGTTCCACCTATAGGGTaGCAGTTCCCTTTAGCTCCT +
Preference number: 3 (lower is better)
Translates to: ICLSLSVSLYLELFLYFTVPPIG*QFPLAP
Trigger: AGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAAC...AGTGAAATAAAGAAACAGCTCAAGGTACAAAGAGACAGACAGAGATAGACAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTaGTGGACAACTAGGCCATCTTTTGATACATATGCA +
Preference number: 3 (lower is better)
Translates to: IKFASPMGLSFQ*WTTRPSFDTYA
Trigger: TGCATATGTATCAAAAGATGGCCTAGTTGTCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR TCA 72 bp CATAGCATTATATGGGGAGGCTACCTCCTCCATGATTaGAAGTTTCAGCAGAGAGTAAATAGTAAACAATTC +
Preference number: 3 (lower is better)
Translates to: HSIIWGGYLLHD*KFQQRVNSKQF
Trigger: GAATTGTTTACTATTTACTCTCTGCTGAAACTTTCAATCATGGAGGAGGTAGCCTCCCCATATAATGCTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR TCA 90 bp TCACGGCCTTCAGTAACTCCACTTTCAGGAGACCCAATGCCCTTTCCTGGCCACAAATCCTATCAGCCATaGGGTGAGGACAAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: SRPSVTPLSGDPMPFPGHKSYQP*GEDKKG
Trigger: ACCCTTCTTGTCCTCACCTCATGGCTGATAGGATTT...GTGGCCAGGAAAGGGCATTGGGTCTCCTGAAAGTGGAGTTACTGAAGGCCGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR TCA 90 bp CAACATAATAGCTCACGGCCTTCAGTAACTCCACTTTCAGGAGACCCAATGCCCCTATCAGCCATGAGGTaGGGACAAGAAGGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: QHNSSRPSVTPLSGDPMPLSAMR*GQEGCR
Trigger: TCTGCACCCTTCTTGTCCTCACCTCATGGCTGATAG...GGGCATTGGGTCTCCTGAAAGTGGAGTTACTGAAGGCCGTGAGCTATTATGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp TGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTaGGGTACTTTCTCTAGCTCCTCCATTAGGGGCCCT +
Preference number: 4 (lower is better)
Translates to: CSTYRVAVPFSS*GTFSSSSIRGP
Trigger: AGGGCCCCTAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp GCCTCTCTTTCCAGTGATGGACAACTAGGCCATCTTTaGATACATATGCAGCTAGAGACAAGAGCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: ASLSSDGQLGHL*IHMQLETRAPG
Trigger: CCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGTCCATCACTGGAAAGAGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR GCA 90 bp CCTTCCTCAGGGCTCAGAGAACCCTATAGAAGAGGAAACAGAAAGATTACAAGACTGGTGTGTCTGATATaGCTGAGAGCAAAAACTCGG +
Preference number: 4 (lower is better)
Translates to: PSSGLREPYRRGNRKITRLVCLI*LRAKTR
Trigger: CCGAGTTTTTGCTCTCAGGCATATCAGACACACCAG...TCTTGTAATCTTTCTGTTTCCTCTTCTATAGGGTTCTCTGAGCCCTGAGGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp AAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTaGCTAGTGTATGCAGTGGTGTCAGCGTTTGGAAGC +
Preference number: 4 (lower is better)
Translates to: KRQLYLGPFSKI*LVYAVVSAFGS
Trigger: GCTTCCAAACGCTGACACCACTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR CCA 90 bp AAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAGTGGAACAGCCACCCCTTTaGTCAGTGATGCTCTTTCAT +
Preference number: 4 (lower is better)
Translates to: KRQLYLGPFSKILLVYAVEQPPL*SVMLFH
Trigger: ATGAAAGAGCATCACTGACCAAAGGGGTGGCTGTTC...CACTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp CTCCTAAAAACATTCTGCTATACTCAAAGACCAGTCTaGCTCAGCAATCATCGGGAAACTTCCTCCTATAGC +
Preference number: 4 (lower is better)
Translates to: LLKTFCYTQRPV*LSNHRETSSYS
Trigger: GCTATAGGAGGAAGTTTCCCGATGATTGCTGAGCAAGACTGGTCTTTGAGTATAGCAGAATGTTTTTAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR CCA 90 bp GTCACAGCTCCAAATTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATAGGAGTCTTTAACTaGGAATCTAGCAAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: VTAPNFVSVTPSMGVLFPIGVFN*ESSKVR
Trigger: TCTCACCTTGCTAGATTCCCAGTTAAAGACTCCTAT...TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp CCATATGGACTAGTGTTCATGGAACTGGAAGTTACTTaGTGTGCAACCAGAGAAGAAAGGCAAACACTAACA +
Preference number: 4 (lower is better)
Translates to: PYGLVFMELEVT*CATREERQTLT
Trigger: TGTTAGTGTTTGCCTTTCTTCTCTGGTTGCACACAAAGTAACTTCCAGTTCCATGAACACTAGTCCATATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR TCA 90 bp CCTTCCTCAGGGCTCAGAGAACCCTATAGAAGAGGAAACAGAAAGATTACAAGAGACTTCAGTAATTATTaGTCCCAAAAATCTAGGGAC +
Preference number: 4 (lower is better)
Translates to: PSSGLREPYRRGNRKITRDFSNY*SQKSRD
Trigger: GTCCCTAGATTTTTGGGATCAATAATTACTGAAGTC...TCTTGTAATCTTTCTGTTTCCTCTTCTATAGGGTTCTCTGAGCCCTGAGGAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp GGTACATGTACCACATCTAAGGGCAGAAACCATGCCTaGAAAAATGGATTAATGGCCAACAATAAAGAAACT +
Preference number: 4 (lower is better)
Translates to: GTCTTSKGRNHA*KNGLMANNKET
Trigger: AGTTTCTTTATTGTTGGCCATTAATCCATTTTTCAAGGCATGGTTTCTGCCCTTAGATGTGGTACATGTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
CDS-3UTR CCA 90 bp ATCTGTCTATCTCTGTCTGTCTCTTTGTACCTTGAGCTGTTTCTTTATTTCACTATAAAAATCACAACCTaGACTTCTGGTGTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: ICLSLSVSLYLELFLYFTIKITT*TSGVSD
Trigger: ATCAGACACACCAGAAGTCCAGGTTGTGATTTTTAT...AGTGAAATAAAGAAACAGCTCAAGGTACAAAGAGACAGACAGAGATAGACAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2
3UTR CAA 72 bp CCAAATTTTGTCTCTGTAACTCCTTCCATGGGTGTTTaGTTCCCAATTCTAAGAAGAAGATTTCTTCATTTT +
Preference number: 4 (lower is better)
Translates to: PNFVSVTPSMGV*FPILRRRFLHF
Trigger: AAAATGAAGAAATCTTCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214109.2