Pregenerated sensors for OLFR748 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060084Ensembl transcript IDs: ENSMUST00000073561.4, ENSMUST00000213101.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCTaGTACAGAGGCCATGGAGAAGTGCTGCTTATTGGCATGCTCATC | + |
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Preference number: 1 (lower is better) Translates to: AGQELILGRKPGGRS*YRGHGEVLLIGMLI Trigger: GATGAGCATGCCAATAAGCAGCACTTCTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 90 bp | GCAGGAAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGAAGTaGTGCTTATTGGCATGCTCATCACAGCTTGCTCAGCCTGCTTTT | + |
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Preference number: 1 (lower is better) Translates to: AGNLEAGADTEAMEK*CLLACSSQLAQPAF Trigger: AAAAGCAGGCTGAGCAAGCTGTGATGAGCATGCCAATAAGCAGCACTTCTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 90 bp | TCATTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTaGAGGCAGGAGCTGATACAGAGGCCATGGAGAAGTGCTGCTTAT | + |
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Preference number: 1 (lower is better) Translates to: SLKEGRAGTHTGQET*RQELIQRPWRSAAY Trigger: ATAAGCAGCACTTCTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 90 bp | AGGTGCCTTATGTGTTGTGAAAATGTGGCTGGTTGTTTCTTGCTTTaGTCTAAAAGCCAGCCACCGCCTCCCTACTCTCAGTTTATGAGT | + |
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Preference number: 1 (lower is better) Translates to: RCLMCCENVAGCFLL*SKSQPPPPYSQFMS Trigger: ACTCATAAACTGAGAGTAGGGAGGCGGTGGCTGGCTTTTAGAGCAAAGCAAGAAACAACCAGCCACATTTTCACAACACATAAGGCACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 90 bp | TCAAGGACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTaGAGACACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCAT | + |
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Preference number: 1 (lower is better) Translates to: SRTGTWRVFWRSVGF*RHKGRENVFSEYPH Trigger: ATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGTCCTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 90 bp | AGAAAGAGATTATTTGGCTTACACTTCCACGTCATAGTTCATCATTaGAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGA | + |
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Preference number: 1 (lower is better) Translates to: RKRLFGLHFHVIVHH*RKAGQELILGRKPG Trigger: TCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAACTATGACGTGGAAGTGTAAGCCAAATAATCTCTTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 90 bp | GTAAATAACTCAGTATCTAATATCCGGGAGTCACTCACAATCTTCTaGGATCCCTCAAAGTGTTTGAGTCACCTCTCTGATTCTACCCTT | + |
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Preference number: 1 (lower is better) Translates to: VNNSVSNIRESLTIF*DPSKCLSHLSDSTL Trigger: AAGGGTAGAATCAGAGAGGTGACTCAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGACTCCCGGATATTAGATACTGAGTTATTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 90 bp | GACCACTACTTGCTTCTCTTATTGTTCTTCTCTGGTAACCTACTCTaGATGGGTTCTCTTTTTGGGATTGCTTTGCTTCTCCAAGTAATA | + |
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Preference number: 1 (lower is better) Translates to: DHYLLLLLFFSGNLL*MGSLFGIALLLQVI Trigger: TATTACTTGGAGAAGCAAAGCAATCCCAAAAAGAGAACCCATGCAGAGTAGGTTACCAGAGAAGAACAATAAGAGAAGCAAGTAGTGGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 90 bp | CAGGATTTCATTATCTATCACTGTCCGATATTGAACTCACATAGATaGACTTGCTTTTGTTCTCAACCACTGAGATTAAAGGCACATACC | + |
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Preference number: 1 (lower is better) Translates to: QDFIIYHCPILNSHR*TCFCSQPLRLKAHT Trigger: GGTATGTGCCTTTAATCTCAGTGGTTGAGAACAAAAGCAAGTTCATCTATGTGAGTTCAATATCGGACAGTGATAGATAATGAAATCCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR TCA 90 bp | AAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTTGATGCAAGAGGGTTACTGTTGCTGCTaGAACACCATGACGAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KCHSSARGRVGSAGLMQEGYCCC*NTMTRS Trigger: GCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACC...CTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTTGATGCAAGAGGACCTACTTTCTGTCTaGCCTGCACTCTTTTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: KCHSSARGRVGSAGLMQEDLLSV*PALFFP Trigger: GGGGAAAAAGAGTGCAGGCCAGACAGAAAGTAGGTC...CTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 90 bp | ATTAAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTaGATGCAAGAGGACACAGCACAGAAACCAGCTGTCTGCATATCA | + |
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Preference number: 2 (lower is better) Translates to: IKCHSSARGRVGSAG*MQEDTAQKPAVCIS Trigger: TGATATGCAGACAGCTGGTTTCTGTGCTGTGTCCTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR TCA 90 bp | AAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTTGATGCAAGAGCAGTGCTTTTCTGGTTaGCCACTACTTGCTTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: KCHSSARGRVGSAGLMQEQCFSG*PLLASL Trigger: AAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACTG...CTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR TCA 90 bp | AACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGTTCATCCACACCTGGTaGGCTATCTTTCCATCCTTG | + |
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Preference number: 2 (lower is better) Translates to: NSYWAGNLEAGADTEAMEFIHTW*AIFPSL Trigger: CAAGGATGGAAAGATAGCTCACCAGGTGTGGATGAA...CTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTGGAGACACAAAGGCCTTCTAGACGCAGGATaGCTTCATCCACACCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: TGTWRVFWRSVGFWRHKGLLDAG*LHPHLV Trigger: CACCAGGTGTGGATGAAGCCATCCTGCGTCTAGAAG...GCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CCA 90 bp | AACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGTCACTCACAATCTTCTaGGATCCCTCAAAGTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: NSYWAGNLEAGADTEAMESLTIF*DPSKCL Trigger: CAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGA...CTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGATCACTGTCCGATATTaGACTCACATAGATGAACTT | + |
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Preference number: 2 (lower is better) Translates to: LKEGRAGTHTGQETWRQEITVRY*THIDEL Trigger: AAGTTCATCTATGTGAGTTCAATATCGGACAGTGAT...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCCACGTCATAGTTCATCATTGAAGGAAGGCAGGGCAGGAACTCATACTGGGTGCTGCTTATTGGCATaGTCATCACAGCTTGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LPRHSSSLKEGRAGTHTGCCLLA*SSQLAQ Trigger: CTGAGCAAGCTGTGATGAGCATGCCAATAAGCAGCA...CCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAACTATGACGTGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 90 bp | CTAAGGTCTCAAGGACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTaGGTTTTTGGAGACACAAAGGCAGGGAGAATGTCTTCTCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: LRSQGQAPGEFSGGV*VFGDTKAGRMSSQN Trigger: ATTCTGAGAAGACATTCTCCCTGCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGTCCTTGAGACCTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 90 bp | AAGAAAGAGATTATTTGGCTTACACTTCCACGTCATAGTTCATCATaGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGG | + |
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Preference number: 2 (lower is better) Translates to: KKEIIWLTLPRHSSS*KEGRAGTHTGQETW Trigger: CCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAACTATGACGTGGAAGTGTAAGCCAAATAATCTCTTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 90 bp | CACATACTTAGGTGGGTTCTTCACACAGGCACAGTGCTTTTCTGGTaGACCACTACTTGCTTCTCTTATTGTTCTTCTCTGGTAACCTAC | + |
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Preference number: 2 (lower is better) Translates to: HILRWVLHTGTVLFW*TTTCFSYCSSLVTY Trigger: GTAGGTTACCAGAGAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACTGTGCCTGTGTGAAGAACCCACCTAAGTATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTGCCATTCTAGCGTCATAGTTCATCATTaGAGGAAGGCAGGGCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: TKAGRMSSQNILIKCHSSVIVHH*RKAGQE Trigger: TTCCTGCCCTGCCTTCCTTCAATGATGAACTATGAC...GCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTACTTAAGGTTACTGTTGCTGCTGAAACACCATGACGAGAAGCAATTTGGGAGAAGTGCTGCTTATTaGCATGCTCATCACAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: SYLRLLLLLKHHDEKQFGRSAAY*HAHHSL Trigger: CAAGCTGTGATGAGCATGCCAATAAGCAGCACTTCT...CCCAAATTGCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCCTACTTTATTATGCTGTTCCTGGTTATTCTAGGATGAAGGTGATTAAGGAGGCCATGGAGAAGTaGTGCTTATTGGCATGCTCA | + |
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Preference number: 2 (lower is better) Translates to: FPLLYYAVPGYSRMKVIKEAMEK*CLLACS Trigger: TGAGCATGCCAATAAGCAGCACTTCTCCATGGCCTC...CTTAATCACCTTCATCCTAGAATAACCAGGAACAGCATAATAAAGTAGGGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCCCCTACTTTATTATGCTGTTCCTGGTTATTCTAGGATGAAGGTGATTAAGGGCACAGTGCTTTTCTaGTTGACCACTACTTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: FPLLYYAVPGYSRMKVIKGTVLF*LTTTCF Trigger: GAAGCAAGTAGTGGTCAACCAGAAAAGCACTGTGCC...CTTAATCACCTTCATCCTAGAATAACCAGGAACAGCATAATAAAGTAGGGGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCCTACTTTATTATGCTGTTCCTGGTTATTCTAGGATGAAGGTGATTAAGTTCTCTTTTTGGGATTaGTTTGCTTCTCCAAGTAAT | + |
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Preference number: 2 (lower is better) Translates to: FPLLYYAVPGYSRMKVIKFSFWD*FASPSN Trigger: ATTACTTGGAGAAGCAAAGCAATCCCAAAAAGAGAA...CTTAATCACCTTCATCCTAGAATAACCAGGAACAGCATAATAAAGTAGGGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 72 bp | GAGGCAGGAGCTGATACAGAGGCCATGGAGAAGTGCTaGTTATTGGCATGCTCATCACAGCTTGCTCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: EAGADTEAMEKC*LLACSSQLAQP Trigger: AGGCTGAGCAAGCTGTGATGAGCATGCCAATAAGCAGCACTTCTCCATGGCCTCTGTATCAGCTCCTGCCTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 72 bp | GCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTaGCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCG | + |
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Preference number: 3 (lower is better) Translates to: AGRMSSQNILIK*HSSARGRVGSA Trigger: CGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | TTCATCATTGAAGGAAGGCAGGGCAGGAACTCATACTaGGCAGGAAACCTGGAGGCAGGAGCTGATACAGAG | + |
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Preference number: 3 (lower is better) Translates to: FIIEGRQGRNSY*AGNLEAGADTE Trigger: CTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGATACCCTCTCCTTTCTaGTTCATCCCCAAGATCACA | + |
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Preference number: 3 (lower is better) Translates to: LKEGRAGTHTGQETWRQEIPSPF*FIPKIT Trigger: TGTGATCTTGGGGATGAACAAGAAAGGAGAGGGTAT...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | AAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTTGATGCAAGAGTACTTAAGGTTACTGTaGCTGCTGAAACACCATGAC | + |
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Preference number: 3 (lower is better) Translates to: KCHSSARGRVGSAGLMQEYLRLL*LLKHHD Trigger: GTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTA...CTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGTCTTTGAAGGTGCTCTaGAAAGTATTGAGTGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: LKEGRAGTHTGQETWRQESLKVL*KVLSVP Trigger: TGGGACACTCAATACTTTCAAGAGCACCTTCAAAGA...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | TCTAAGGTCTCAAGGACAGGCACCTGGAGAGTTTTCTaGAGGAGTGTTGGTTTTTGGAGACACAAAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SKVSRTGTWRVF*RSVGFWRHKGR Trigger: CCTGCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGTCCTTGAGACCTTAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | ACTATCAGTCCAGGGCTAGCACCACCCATAGTGGGCTaGACCCTCTCCCATCAATCACTAATTATGAAAATG | + |
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Preference number: 3 (lower is better) Translates to: TISPGLAPPIVG*TLSHQSLIMKM Trigger: CATTTTCATAATTAGTGATTGATGGGAGAGGGTCCAGCCCACTATGGGTGGTGCTAGCCCTGGACTGATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | GGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTaGAGACACAAAGGCAGGGAGAATGTCTTCTCAGAA | + |
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Preference number: 3 (lower is better) Translates to: GTWRVFWRSVGF*RHKGRENVFSE Trigger: TTCTGAGAAGACATTCTCCCTGCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 72 bp | TTATTTGGCTTACACTTCCACGTCATAGTTCATCATTaGAGGAAGGCAGGGCAGGAACTCATACTGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: LFGLHFHVIVHH*RKAGQELILGR Trigger: CCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAACTATGACGTGGAAGTGTAAGCCAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 72 bp | GGTGGGTTCTTCACACAGGCACAGTGCTTTTCTGGTTaGCCACTACTTGCTTCTCTTATTGTTCTTCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: GGFFTQAQCFSG*PLLASLIVLLW Trigger: CCAGAGAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACTGTGCCTGTGTGAAGAACCCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTGCCATTCTAGCCGTCATAGTTCATCATaGAAGGAAGGCAGGGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: TKAGRMSSQNILIKCHSSRHSSS*KEGRAG Trigger: TCCTGCCCTGCCTTCCTTCAATGATGAACTATGACG...GCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 72 bp | AGTCACTCACAATCTTCTGGGATCCCTCAAAGTGTTTaGGTCACCTCTCTGATTCTACCCTTGGTAGCATAC | + |
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Preference number: 3 (lower is better) Translates to: SHSQSSGIPQSV*VTSLILPLVAY Trigger: GTATGCTACCAAGGGTAGAATCAGAGAGGTGACTCAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTGGAGACACAAAGGCGTATATGTCACATCTTaGAAGGTGCTCTTGAAAGTA | + |
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Preference number: 3 (lower is better) Translates to: TGTWRVFWRSVGFWRHKGVYVTS*KVLLKV Trigger: TACTTTCAAGAGCACCTTCAAAGATGTGACATATAC...GCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTGCCATTCTAGCGCATGGGTTCTCTTTTaGGGATTGCTTTGCTTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TKAGRMSSQNILIKCHSSAWVLF*GLLCFS Trigger: GGAGAAGCAAAGCAATCCCAAAAAGAGAACCCATGC...GCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | TCAGTATCTAATATCCGGGAGTCACTCACAATCTTCTaGGATCCCTCAAAGTGTTTGAGTCACCTCTCTGAT | + |
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Preference number: 3 (lower is better) Translates to: SVSNIRESLTIF*DPSKCLSHLSD Trigger: ATCAGAGAGGTGACTCAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGACTCCCGGATATTAGATACTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | CTTAGGTGGGTTCTTCACACAGGCACAGTGCTTTTCTaGTTGACCACTACTTGCTTCTCTTATTGTTCTTCT | + |
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Preference number: 3 (lower is better) Translates to: LRWVLHTGTVLF*LTTTCFSYCSS Trigger: AGAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACTGTGCCTGTGTGAAGAACCCACCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 72 bp | TTGCTTCTCTTATTGTTCTTCTCTGGTAACCTACTCTaGATGGGTTCTCTTTTTGGGATTGCTTTGCTTCTC | + |
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Preference number: 3 (lower is better) Translates to: LLLLLFFSGNLL*MGSLFGIALLL Trigger: GAGAAGCAAAGCAATCCCAAAAAGAGAACCCATGCAGAGTAGGTTACCAGAGAAGAACAATAAGAGAAGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | GGGGACAGTCTCATTCAAATCACCACAATGGTTCTTTaGATGGACTCTCCTTTCATTAGGAAAATCACATAC | + |
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Preference number: 3 (lower is better) Translates to: GDSLIQITTMVL*MDSPFIRKITY Trigger: GTATGTGATTTTCCTAATGAAAGGAGAGTCCATCCAAAGAACCATTGTGGTGATTTGAATGAGACTGTCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCCTACTTTATTATGCTGTTCCTGGTTATTCTAGGATGAAGGTGATTAAGCTGGTTGACCACTACTaGCTTCTCTTATTGTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: FPLLYYAVPGYSRMKVIKLVDHY*LLLLFF Trigger: GAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAG...CTTAATCACCTTCATCCTAGAATAACCAGGAACAGCATAATAAAGTAGGGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR TCA 72 bp | GTCTTACTTAAGGTTACTGTTGCTGCTGAAACACCATaGCGAGAAGCAATTTGGGGAAGAAAGAGATTATTT | + |
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Preference number: 3 (lower is better) Translates to: VLLKVTVAAETP*REAIWGRKRLF Trigger: AAATAATCTCTTTCTTCCCCAAATTGCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTAAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | ATGACGAGAAGCAATTTGGGGAAGAAAGAGATTATTTaGCTTACACTTCCACGTCATAGTTCATCATTGAAG | + |
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Preference number: 3 (lower is better) Translates to: MTRSNLGKKEII*LTLPRHSSSLK Trigger: CTTCAATGATGAACTATGACGTGGAAGTGTAAGCCAAATAATCTCTTTCTTCCCCAAATTGCTTCTCGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | TATGAGTCACAGACCATACAGTCATTCCTCAAACTATaGAGAACAATGTTGGACCATATGTGTAGTTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: YESQTIQSFLKL*RTMLDHMCSCS Trigger: TGAACAACTACACATATGGTCCAACATTGTTCTCCATAGTTTGAGGAATGACTGTATGGTCTGTGACTCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR GCA 72 bp | TCAAATGGGTTACTTTTCACAGAGTGTAAATATAGGTaGCTTATGTGTTGTGAAAATGTGGCTGGTTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: SNGLLFTECKYR*LMCCENVAGCF Trigger: GAAACAACCAGCCACATTTTCACAACACATAAGGCACCTATATTTACACTCTGTGAAAAGTAACCCATTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CCA 72 bp | ACAGTCTCATTCAAATCACCACAATGGTTCTTTGGATaGACTCTCCTTTCATTAGGAAAATCACATACTCAA | + |
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Preference number: 3 (lower is better) Translates to: TVSFKSPQWFFG*TLLSLGKSHTQ Trigger: TTGAGTATGTGATTTTCCTAATGAAAGGAGAGTCCATCCAAAGAACCATTGTGGTGATTTGAATGAGACTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCCCTACTTTATTATGCTGTTCCTGGTTATTCTAGGATGAAGGTGATTAAGTACTTGCTTCTCTTATaGTTCTTCTCTGGTAACCTA | + |
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Preference number: 3 (lower is better) Translates to: FPLLYYAVPGYSRMKVIKYLLLL*FFSGNL Trigger: TAGGTTACCAGAGAAGAACAATAAGAGAAGCAAGTA...CTTAATCACCTTCATCCTAGAATAACCAGGAACAGCATAATAAAGTAGGGGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | CATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTaGATGCAAGAGGACACAGCACAGAAACCAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: HSSARGRVGSAG*MQEDTAQKPAV Trigger: GACAGCTGGTTTCTGTGCTGTGTCCTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR TCA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGGTGGGATCCACAGGTTaGGAAGGCCTTTTGTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: LKEGRAGTHTGQETWRQEVGSTG*EGLLSS Trigger: GGACGACAAAAGGCCTTCTCAACCTGTGGATCCCAC...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGTTGGTTCCACCTCACTaGACAAATGATGGCCATATT | + |
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Preference number: 4 (lower is better) Translates to: LKEGRAGTHTGQETWRQELVPPH*TNDGHI Trigger: AATATGGCCATCATTTGTGCAGTGAGGTGGAACCAA...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | GGAGCTGATACAGAGGCCATGGAGAAGTGCTGCTTATaGGCATGCTCATCACAGCTTGCTCAGCCTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GADTEAMEKCCL*ACSSQLAQPAF Trigger: AAAAGCAGGCTGAGCAAGCTGTGATGAGCATGCCAATAAGCAGCACTTCTCCATGGCCTCTGTATCAGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR GCA 90 bp | AACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGAGAATACTGCAGAATTaGCTAGTCATGATGGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: NSYWAGNLEAGADTEAMERILQN*LVMMEG Trigger: TCCTTCCATCATGACTAGGCAATTCTGCAGTATTCT...CTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGAATGGGAATCAAATGTaGAGAGAAACCAATGATCCA | + |
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Preference number: 4 (lower is better) Translates to: LKEGRAGTHTGQETWRQENGNQM*RETNDP Trigger: TGGATCATTGGTTTCTCTGCACATTTGATTCCCATT...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | AGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTaGGAGACACAAAGGCAGGGAGAATGTCTTCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: RHLESFLEECWF*ETQRQGECLLR Trigger: TCTGAGAAGACATTCTCCCTGCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CCA 90 bp | ACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTGCCATTCTAGCGGGGTGTGGAGTTGTTaGTTCCACCTCACTGCACAA | + |
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Preference number: 4 (lower is better) Translates to: TKAGRMSSQNILIKCHSSGVWSC*FHLTAQ Trigger: TTGTGCAGTGAGGTGGAACCAACAACTCCACACCCC...GCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | GAGTCACTCACAATCTTCTGGGATCCCTCAAAGTGTTaGAGTCACCTCTCTGATTCTACCCTTGGTAGCATA | + |
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Preference number: 4 (lower is better) Translates to: ESLTIFWDPSKC*SHLSDSTLGSI Trigger: TATGCTACCAAGGGTAGAATCAGAGAGGTGACTCAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | ATTATTTGGCTTACACTTCCACGTCATAGTTCATCATaGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IIWLTLPRHSSS*KEGRAGTHTGQ Trigger: CTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAATGATGAACTATGACGTGGAAGTGTAAGCCAAATAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | AGGTGGGTTCTTCACACAGGCACAGTGCTTTTCTGGTaGACCACTACTTGCTTCTCTTATTGTTCTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RWVLHTGTVLFW*TTTCFSYCSSL Trigger: CAGAGAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACTGTGCCTGTGTGAAGAACCCACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR GCA 90 bp | TCTTACTTAAGGTTACTGTTGCTGCTGAAACACCATGACGAGAAGCAATTTGGGGCATGTTGGGAACTGTaGAGGTCACGTACCAGATTT | + |
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Preference number: 4 (lower is better) Translates to: SYLRLLLLLKHHDEKQFGACWEL*RSRTRF Trigger: AAATCTGGTACGTGACCTGCACAGTTCCCAACATGC...CCCAAATTGCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | AGTGCTTTTCTGGTTGACCACTACTTGCTTCTCTTATaGTTCTTCTCTGGTAACCTACTCTGCATGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: SAFLVDHYLLLL*FFSGNLLCMGS Trigger: AGAACCCATGCAGAGTAGGTTACCAGAGAAGAACAATAAGAGAAGCAAGTAGTGGTCAACCAGAAAAGCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR TCA 90 bp | TCTTACTTAAGGTTACTGTTGCTGCTGAAACACCATGACGAGAAGCAATTTGGGTCAGTGAGAAAAGTGTaGTTTGAATCTTCCAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SYLRLLLLLKHHDEKQFGSVRKV*FESSRD Trigger: GTCCCTGGAAGATTCAAATCACACTTTTCTCACTGA...CCCAAATTGCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR TCA 90 bp | TCTAATATCCGGGAGTCACTCACAATCTTCTGGGATCCCTCAAAGTGTTTGAGTGAGCAGCAGAATCAGTaGGAAAAGTGTGATTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: SNIRESLTIFWDPSKCLSEQQNQ*EKCDLN Trigger: ATTCAAATCACACTTTTCTCACTGATTCTGCTGCTC...ACTCAAACACTTTGAGGGATCCCAGAAGATTGTGAGTGACTCCCGGATATTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR TCA 90 bp | ACAAAGGCAGGGAGAATGTCTTCTCAGAATATCCTCATTAAGTGCCATTCTAGCCTTTTGTCGTCCATCTaGAGAAGAAACCTGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TKAGRMSSQNILIKCHSSLLSSI*RRNLKN Trigger: GTTCTTCAGGTTTCTTCTTCAGATGGACGACAAAAG...GCTAGAATGGCACTTAATGAGGATATTCTGAGAAGACATTCTCCCTGCCTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| 3UTR CAA 72 bp | AACAACAAAGATATCACTGTTATACCCTCTCCTTTCTaGTTCATCCCCAAGATCACAATTAACATGAGCATC | + |
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Preference number: 4 (lower is better) Translates to: NNKDITVIPSPF*FIPKITINMSI Trigger: GATGCTCATGTTAATTGTGATCTTGGGGATGAACAAGAAAGGAGAGGGTATAACAGTGATATCTTTGTTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | AAGTGCCATTCTAGCGCTAGGGGAAGGGTAGGGAGCGCGGGGTTGATGCAAGAGGTTTTGGAAAGAGAGTaGACCAGCATGTTGGGAACT | + |
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Preference number: 5 (lower is better) Translates to: KCHSSARGRVGSAGLMQEVLERE*TSMLGT Trigger: AGTTCCCAACATGCTGGTCAACTCTCTTTCCAAAAC...CTCTTGCATCAACCCCGCGCTCCCTACCCTTCCCCTAGCGCTAGAATGGCACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | ACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTGGAGACACAAAGGCAGGGGTGTGGAGTTGTaGGTTCCACCTCACTGCACA | + |
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Preference number: 5 (lower is better) Translates to: TGTWRVFWRSVGFWRHKGRGVEL*VPPHCT Trigger: TGTGCAGTGAGGTGGAACCAACAACTCCACACCCCT...GCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGGAAGGCAGGGCAGGAACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCAGAATACTGCAGAATaGCCTAGTCATGATGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: LKEGRAGTHTGQETWRQEQNTAE*PSHDGR Trigger: CCTTCCATCATGACTAGGCAATTCTGCAGTATTCTG...CTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTTCCTGCCCTGCCTTCCTTCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | AACTCATACTGGGCAGGAAACCTGGAGGCAGGAGCTGATACAGAGGCCATGGAGGATATAGTCTTAGTTTaGGAAAGAGAGTTGACCAGC | + |
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Preference number: 5 (lower is better) Translates to: NSYWAGNLEAGADTEAMEDIVLV*ERELTS Trigger: GCTGGTCAACTCTCTTTCCAAAACTAAGACTATATC...CTCCATGGCCTCTGTATCAGCTCCTGCCTCCAGGTTTCCTGCCCAGTATGAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | ACAGGCACCTGGAGAGTTTTCTGGAGGAGTGTTGGTTTTTGGAGACACAAAGGCACAGAGTTGCTAGACTaGGGAGTCACATACATCACC | + |
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Preference number: 5 (lower is better) Translates to: TGTWRVFWRSVGFWRHKGTELLD*GVTYIT Trigger: GGTGATGTATGTGACTCCCAAGTCTAGCAACTCTGT...GCCTTTGTGTCTCCAAAAACCAACACTCCTCCAGAAAACTCTCCAGGTGCCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | TCTTACTTAAGGTTACTGTTGCTGCTGAAACACCATGACGAGAAGCAATTTGGGCATAGGGGTGTGGAGTaGTTGGTTCCACCTCACTGC | + |
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Preference number: 5 (lower is better) Translates to: SYLRLLLLLKHHDEKQFGHRGVE*LVPPHC Trigger: GCAGTGAGGTGGAACCAACAACTCCACACCCCTATG...CCCAAATTGCTTCTCGTCATGGTGTTTCAGCAGCAACAGTAACCTTAAGTAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS-3UTR CAA 90 bp | TTTGGATGGACTCTCCTTTCATTAGGAAAATCACATACTCAACATCTTTCACTAGGAAGAAGCATTCAGTaGTGCCCAGGGAGAAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: FGWTLLSLGKSHTQHLSLGRSIQ*CPGRRR Trigger: TCTTCTTCTCCCTGGGCACAACTGAATGCTTCTTCC...TAGTGAAAGATGTTGAGTATGTGATTTTCCTAATGAAAGGAGAGTCCATCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213101.2 |
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| CDS CAA 72 bp | ATAGTCTTAGTTTTGGAAAGAGAGTTGACCAGCATGTaGGGAACTGTGCAGGTCACGTACCAGATTTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: IVLVLERELTSM*GTVQVTYQISR Trigger: CCTAGAAATCTGGTACGTGACCTGCACAGTTCCCAACATGCTGGTCAACTCTCTTTCCAAAACTAAGACTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073561.4 ENSMUST00000213101.2 |
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| CDS GCA 72 bp | GGTGTCACCACAGAGTATATCAGTGTGATAATTTTATaGATAGCAACAGAGTTGCTAGACTTGGGAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: GVTTEYISVIIL*IATELLDLGVT Trigger: TGTGACTCCCAAGTCTAGCAACTCTGTTGCTATGCATAAAATTATCACACTGATATACTCTGTGGTGACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073561.4 ENSMUST00000213101.2 |
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