RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR693 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051680

Ensembl transcript IDs: ENSMUST00000057817.3, ENSMUST00000215541.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTAAATATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTaGAAGCTCAAGTCAGACAAAATTCCAACACGGAAGAGGCAAGGG +
Preference number: 1 (lower is better)
Translates to: VNMNSPQLCQQAQDL*KLKSDKIPTRKRQG
Trigger: CCCTTGCCTCTTCCGTGTTGGAATTTTGTCTGACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATATTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 90 bp ATACTCAGGGATCATTGTGAAAGGTGGGACTATAAGAGTCAGAGGTaGTGGATGACTACAAAGATGTCTTTCCTGGACACAATAGGGAAG +
Preference number: 1 (lower is better)
Translates to: ILRDHCERWDYKSQR*WMTTKMSFLDTIGK
Trigger: CTTCCCTATTGTGTCCAGGAAAGACATCTTTGTAGTCATCCACCACCTCTGACTCTTATAGTCCCACCTTTCACAATGATCCCTGAGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 90 bp GCCAAGCTGCAGAAAGTAAAAGACTATAGAATGCTCAGCTTTAAGTaGGACATCTGGATTATACCCTTTCCTCCCAATACTCAGGGATCA +
Preference number: 1 (lower is better)
Translates to: AKLQKVKDYRMLSFK*DIWIIPFPPNTQGS
Trigger: TGATCCCTGAGTATTGGGAGGAAAGGGTATAATCCAGATGTCCCACTTAAAGCTGAGCATTCTATAGTCTTTTACTTTCTGCAGCTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR TCA 90 bp AAGCATGGAGTACTGTATGACATTTTGACACATATAAACACCAAATaGTGTTCCAGTCATGTACATGCACCAGATATAGCGACCACTAAT +
Preference number: 1 (lower is better)
Translates to: KHGVLYDILTHINTK*CSSHVHAPDIATTN
Trigger: ATTAGTGGTCGCTATATCTGGTGCATGTACATGACTGGAACATCATTTGGTGTTTATATGTGTCAAAATGTCATACAGTACTCCATGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 90 bp GTTATACAAAAAGGAAGTTTCCATTGTTTGAGCTTTACACATCCTTaGTTACATTTAGTCCTTGACACTGCTGTTATTCTGCTAAATGGT +
Preference number: 1 (lower is better)
Translates to: VIQKGSFHCLSFTHP*LHLVLDTAVILLNG
Trigger: ACCATTTAGCAGAATAACAGCAGTGTCAAGGACTAAATGTAACCAAGGATGTGTAAAGCTCAAACAATGGAAACTTCCTTTTTGTATAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR-3UTR CCA 90 bp TATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAGTCCATGATGCAAATCTATaGCAGCTGAACACTGGACAA +
Preference number: 2 (lower is better)
Translates to: YELTTVVPAGTRPVQAQVHDANL*QLNTGQ
Trigger: TTGTCCAGTGTTCAGCTGCCATAGATTTGCATCATG...GACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CAA 90 bp TCAACCTGCTGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTaGAGTCTGCACCTACTGATCAATAATTCCCTGCTCTCTATACTA +
Preference number: 2 (lower is better)
Translates to: STCCVVALQNFHSPT*SLHLLINNSLLSIL
Trigger: TAGTATAGAGAGCAGGGAATTATTGATCAGTAGGTGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR-3UTR CCA 90 bp TATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAGTCGACTATGGGTTATATTaGGTGGTAATATCTTTGATC +
Preference number: 2 (lower is better)
Translates to: YELTTVVPAGTRPVQAQVDYGLY*VVISLI
Trigger: GATCAAAGATATTACCACCCAATATAACCCATAGTC...GACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR-3UTR CCA 90 bp GATGACTACAAAGATGTCTTTCCTGGACACAATAGGGAAGTTGTAAATATGAACATGCAATCTAAGCCCTaGCATCCATCAGACCATCTA +
Preference number: 2 (lower is better)
Translates to: DDYKDVFPGHNREVVNMNMQSKP*HPSDHL
Trigger: TAGATGGTCTGATGGATGCCAGGGCTTAGATTGCAT...GTTCATATTTACAACTTCCCTATTGTGTCCAGGAAAGACATCTTTGTAGTCATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR-3UTR CCA 90 bp GATGACTACAAAGATGTCTTTCCTGGACACAATAGGGAAGTTGTAAATATGAACAGATCTATAAATGCTTaGTATACTTACCATCAGCAC +
Preference number: 2 (lower is better)
Translates to: DDYKDVFPGHNREVVNMNRSINA*YTYHQH
Trigger: GTGCTGATGGTAAGTATACCAAGCATTTATAGATCT...GTTCATATTTACAACTTCCCTATTGTGTCCAGGAAAGACATCTTTGTAGTCATC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 72 bp CCTTTCCTCCCAATACTCAGGGATCATTGTGAAAGGTaGGACTATAAGAGTCAGAGGTGGTGGATGACTACA +
Preference number: 3 (lower is better)
Translates to: PFLPILRDHCER*DYKSQRWWMTT
Trigger: TGTAGTCATCCACCACCTCTGACTCTTATAGTCCCACCTTTCACAATGATCCCTGAGTATTGGGAGGAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 72 bp CATTGTGAAAGGTGGGACTATAAGAGTCAGAGGTGGTaGATGACTACAAAGATGTCTTTCCTGGACACAATA +
Preference number: 3 (lower is better)
Translates to: HCERWDYKSQRW*MTTKMSFLDTI
Trigger: TATTGTGTCCAGGAAAGACATCTTTGTAGTCATCCACCACCTCTGACTCTTATAGTCCCACCTTTCACAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 72 bp AAAGACTATAGAATGCTCAGCTTTAAGTGGGACATCTaGATTATACCCTTTCCTCCCAATACTCAGGGATCA +
Preference number: 3 (lower is better)
Translates to: KDYRMLSFKWDI*IIPFPPNTQGS
Trigger: TGATCCCTGAGTATTGGGAGGAAAGGGTATAATCCAGATGTCCCACTTAAAGCTGAGCATTCTATAGTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR-3UTR CAA 90 bp GATATAGCGACCACTAATAAGGGCGAGATGTGTTCATGGAAAAATGGAAAATCAGACCATCTAGCAAGCTaGATGCTTAGAGAGAGAGAT +
Preference number: 3 (lower is better)
Translates to: DIATTNKGEMCSWKNGKSDHLAS*MLRERD
Trigger: ATCTCTCTCTCTAAGCATCAAGCTTGCTAGATGGTC...TGATTTTCCATTTTTCCATGAACACATCTCGCCCTTATTAGTGGTCGCTATATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR TCA 72 bp GAGAGATGGGTAAGCATGATGCAAATCTATGGCAGCTaGACACTGGACAAAGCTGTCATTGTAGATAAAATA +
Preference number: 3 (lower is better)
Translates to: ERWVSMMQIYGS*TLDKAVIVDKI
Trigger: TATTTTATCTACAATGACAGCTTTGTCCAGTGTTCAGCTGCCATAGATTTGCATCATGCTTACCCATCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR GCA 72 bp TTTGAAATTCACTTACATAGTTTTCAATCATCAACCTaGTGTGTAGTGGCACTCCAGAACTTCCACTCTCCA +
Preference number: 3 (lower is better)
Translates to: FEIHLHSFQSST*CVVALQNFHSP
Trigger: TGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTTGATGATTGAAAACTATGTAAGTGAATTTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR TCA 72 bp GTACTGTATGACATTTTGACACATATAAACACCAAATaGTGTTCCAGTCATGTACATGCACCAGATATAGCG +
Preference number: 3 (lower is better)
Translates to: VLYDILTHINTK*CSSHVHAPDIA
Trigger: CGCTATATCTGGTGCATGTACATGACTGGAACATCATTTGGTGTTTATATGTGTCAAAATGTCATACAGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CCA 72 bp AAAGGAAGTTTCCATTGTTTGAGCTTTACACATCCTTaGTTACATTTAGTCCTTGACACTGCTGTTATTCTG +
Preference number: 3 (lower is better)
Translates to: KGSFHCLSFTHP*LHLVLDTAVIL
Trigger: CAGAATAACAGCAGTGTCAAGGACTAAATGTAACCAAGGATGTGTAAAGCTCAAACAATGGAAACTTCCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CCA 90 bp TATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAGTCGGCACTCAGAGAAGCTaGAATCCAGGAGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: YELTTVVPAGTRPVQAQVGTQRS*NPGDGH
Trigger: GTGGCCATCTCCTGGATTCCAGCTTCTCTGAGTGCC...GACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp AACCTGCTGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTTGAGTCTGCACTTTCTTCCCTCGTTTaGGGGCATTTTGAGCACAGT +
Preference number: 4 (lower is better)
Translates to: NLLCSGTPELPLSNLESALSSLV*GHFEHS
Trigger: ACTGTGCTCAAAATGCCCTCAAACGAGGGAAGAAAG...TGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp AACCTGCTGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTTGAGTCTGCATCAGCATTCCATTGCTaGTCAGTGCCAACATGTACA +
Preference number: 4 (lower is better)
Translates to: NLLCSGTPELPLSNLESASAFHC*SVPTCT
Trigger: TGTACATGTTGGCACTGATCAGCAATGGAATGCTGA...TGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CAA 72 bp TGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTaGAGTCTGCACCTACTGATCAATAATTCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: CVVALQNFHSPT*SLHLLINNSLL
Trigger: GAGCAGGGAATTATTGATCAGTAGGTGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp TATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAGTCAGATGCTTGGCCTCATaGATATCATGTAGTTCAATG +
Preference number: 4 (lower is better)
Translates to: YELTTVVPAGTRPVQAQVRCLAS*ISCSSM
Trigger: CATTGAACTACATGATATTCATGAGGCCAAGCATCT...GACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp AACCTGCTGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTTGAGTCTGCACCATCAAATAAACCATaGGTTGATATCTGGAGGTGT +
Preference number: 4 (lower is better)
Translates to: NLLCSGTPELPLSNLESAPSNKP*VDIWRC
Trigger: ACACCTCCAGATATCAACTCATGGTTTATTTGATGG...TGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CAA 72 bp CACAATAGGGAAGTTGTAAATATGAACTCACCACAGTaGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAG +
Preference number: 4 (lower is better)
Translates to: HNREVVNMNSPQ*CQQAQDLCKLK
Trigger: CTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATATTTACAACTTCCCTATTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR GCA 90 bp GAAATGAAGAGTGAGTTTTCTTCAAGTGAATGGCCCCTAGTAAGTTGTATAGTGCAGAAGGAGGTCCTCTaGACTACCCAGTGCCAGTTC +
Preference number: 4 (lower is better)
Translates to: EMKSEFSSSEWPLVSCIVQKEVL*TTQCQF
Trigger: GAACTGGCACTGGGTAGTGCAGAGGACCTCCTTCTG...CACTATACAACTTACTAGGGGCCATTCACTTGAAGAAAACTCACTCTTCATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp GATGACTACAAAGATGTCTTTCCTGGACACAATAGGGAAGTTGTAAATATGAACCAGCAAGAGGAGGGATaGGCAAGGTCACACCCATCA +
Preference number: 4 (lower is better)
Translates to: DDYKDVFPGHNREVVNMNQQEEG*ARSHPS
Trigger: TGATGGGTGTGACCTTGCTCATCCCTCCTCTTGCTG...GTTCATATTTACAACTTCCCTATTGTGTCCAGGAAAGACATCTTTGTAGTCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CAA 72 bp AGTGAATGGCCCCTAGTAAGTTGTATAGTGCAGGGTTaGGCTATAAACCCAAAAGCATATGGGCAGCACATA +
Preference number: 4 (lower is better)
Translates to: SEWPLVSCIVQG*AINPKAYGQHI
Trigger: TATGTGCTGCCCATATGCTTTTGGGTTTATAGCCAAACCCTGCACTATACAACTTACTAGGGGCCATTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp GATGACTACAAAGATGTCTTTCCTGGACACAATAGGGAAGTTGTAAATATGAACACCTGTCATAAGCCATaGAGGCCAGAAGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: DDYKDVFPGHNREVVNMNTCHKP*RPEGGP
Trigger: AGGACCTCCTTCTGGCCTTCATGGCTTATGACAGGT...GTTCATATTTACAACTTCCCTATTGTGTCCAGGAAAGACATCTTTGTAGTCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR GCA 90 bp GAAATGAAGAGTGAGTTTTCTTCAAGTGAATGGCCCCTAGTAAGTTGTATAGTGTCCATTGCTGATCAGTaGCAACATGTACAGGGCAGC +
Preference number: 4 (lower is better)
Translates to: EMKSEFSSSEWPLVSCIVSIADQ*QHVQGS
Trigger: GCTGCCCTGTACATGTTGGCACTGATCAGCAATGGA...CACTATACAACTTACTAGGGGCCATTCACTTGAAGAAAACTCACTCTTCATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR TCA 90 bp GATATAGCGACCACTAATAAGGGCGAGATGTGTTCATGGAAAAATGGAAAATCATCTTCAAAGCCCCACTaGCCTCTTTATTTCTTAAAC +
Preference number: 4 (lower is better)
Translates to: DIATTNKGEMCSWKNGKSSSKPH*PLYFLN
Trigger: GTTTAAGAAATAAAGAGGTCAGTGGGGCTTTGAAGA...TGATTTTCCATTTTTCCATGAACACATCTCGCCCTTATTAGTGGTCGCTATATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CCA 90 bp GAAATGAAGAGTGAGTTTTCTTCAAGTGAATGGCCCCTAGTAAGTTGTATAGTGCAAGCAAGAGGTACATaGGAACATGGAGGTAAATAT +
Preference number: 4 (lower is better)
Translates to: EMKSEFSSSEWPLVSCIVQARGT*EHGGKY
Trigger: ATATTTACCTCCATGTTCCCATGTACCTCTTGCTTG...CACTATACAACTTACTAGGGGCCATTCACTTGAAGAAAACTCACTCTTCATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
3UTR CAA 72 bp TATTGCGTCTTTGAGCTCTTGTCAGTGAAGATCTTCTaGTATTTGATGATAATTAACACAGAGACACATAAC +
Preference number: 4 (lower is better)
Translates to: YCVFELLSVKIF*YLMIINTETHN
Trigger: GTTATGTGTCTCTGTGTTAATTATCATCAAATACAAGAAGATCTTCACTGACAAGAGCTCAAAGACGCAATA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS CCA 90 bp GTACTGCATAGTGTAGATGGTATATCCCAGGGCACTCAGAGAAGCTaGAATCCAGGAGATGGCCACCATAAGCCAGCAGATGCTTGGCCT +
Preference number: 5 (lower is better)
Translates to: VLHSVDGISQGTQRS*NPGDGHHKPADAWP
Trigger: AGGCCAAGCATCTGCTGGCTTATGGTGGCCATCTCCTGGATTCCAGCTTCTCTGAGTGCCCTGGGATATACCATCTACACTATGCAGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057817.3
ENSMUST00000215541.2
CDS-3UTR CAA 90 bp AACCTGCTGTGTAGTGGCACTCCAGAACTTCCACTCTCCAACCTTGAGTCTGCACTAATCTCCCGGGATTaGCAGAAGGGGTACTGCATA +
Preference number: 5 (lower is better)
Translates to: NLLCSGTPELPLSNLESALISRD*QKGYCI
Trigger: TATGCAGTACCCCTTCTGCAAATCCCGGGAGATTAG...TGCAGACTCAAGGTTGGAGAGTGGAAGTTCTGGAGTGCCACTACACAGCAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CAA 90 bp TATGAACTCACCACAGTTGTGCCAGCAGGCACAAGACCTGTGCAAGCTCAAGTCAGGATCAGCATTCCATaGCTGATCAGTGCCAACATG +
Preference number: 5 (lower is better)
Translates to: YELTTVVPAGTRPVQAQVRISIP*LISANM
Trigger: CATGTTGGCACTGATCAGCAATGGAATGCTGATCCT...GACTTGAGCTTGCACAGGTCTTGTGCCTGCTGGCACAACTGTGGTGAGTTCATA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CAA 90 bp AGAGAGATGGGTAAGCATGATGCAAATCTATGGCAGCTGAACACTGGACAAAGCGTGATGGTGTTGTCTTaGAGCAGAAAGTCCATGACA +
Preference number: 5 (lower is better)
Translates to: REMGKHDANLWQLNTGQSVMVLS*SRKSMT
Trigger: TGTCATGGACTTTCTGCTCAAAGACAACACCATCAC...GCTTTGTCCAGTGTTCAGCTGCCATAGATTTGCATCATGCTTACCCATCTCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CAA 90 bp GATATAGCGACCACTAATAAGGGCGAGATGTGTTCATGGAAAAATGGAAAATCAAAGTCCATGACAGCTTaGGGACTGATAACTGAGGCG +
Preference number: 5 (lower is better)
Translates to: DIATTNKGEMCSWKNGKSKSMTA*GLITEA
Trigger: CGCCTCAGTTATCAGTCCCAAAGCTGTCATGGACTT...TGATTTTCCATTTTTCCATGAACACATCTCGCCCTTATTAGTGGTCGCTATATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS-3UTR CAA 90 bp GATATAGCGACCACTAATAAGGGCGAGATGTGTTCATGGAAAAATGGAAAATCACAAATAAACCATGAGTaGATATCTGGAGGTGTCTGC +
Preference number: 5 (lower is better)
Translates to: DIATTNKGEMCSWKNGKSQINHE*ISGGVC
Trigger: GCAGACACCTCCAGATATCAACTCATGGTTTATTTG...TGATTTTCCATTTTTCCATGAACACATCTCGCCCTTATTAGTGGTCGCTATATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215541.2
CDS CCA 72 bp AGTGTAGATGGTATATCCCAGGGCACTCAGAGAAGCTaGAATCCAGGAGATGGCCACCATAAGCCAGCAGAT +
Preference number: 6 (lower is better)
Translates to: SVDGISQGTQRS*NPGDGHHKPAD
Trigger: ATCTGCTGGCTTATGGTGGCCATCTCCTGGATTCCAGCTTCTCTGAGTGCCCTGGGATATACCATCTACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057817.3
ENSMUST00000215541.2