RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR677 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073914

Ensembl transcript IDs: ENSMUST00000098161.2, ENSMUST00000213204.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACTCAAGTGCAATTCACGTACACAAACCAGGAAATTCTGCAGGTTaGTATACCAGGCAGGAATGGGATATAGCTGGTGTCATTCAGAAC +
Preference number: 1 (lower is better)
Translates to: NSSAIHVHKPGNSAG*YTRQEWDIAGVIQN
Trigger: GTTCTGAATGACACCAGCTATATCCCATTCCTGCCTGGTATAGCAACCTGCAGAATTTCCTGGTTTGTGTACGTGAATTGCACTTGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 90 bp AGGAAATTCTGCAGGTTGCTATACCAGGCAGGAATGGGATATAGCTaGTGTCATTCAGAACAAAAGTTGCTTAGGTTCCCAGAGATGAAT +
Preference number: 1 (lower is better)
Translates to: RKFCRLLYQAGMGYS*CHSEQKLLRFPEMN
Trigger: ATTCATCTCTGGGAACCTAAGCAACTTTTGTTCTGAATGACACCAGCTATATCCCATTCCTGCCTGGTATAGCAACCTGCAGAATTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR GCA 90 bp CACATTGCTAACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTaGCTTATCTCCCTTCCTCCTTATAATCACCCTTCTATCTTCATG +
Preference number: 1 (lower is better)
Translates to: HIANIYSSIILYSPC*LISLPPYNHPSIFM
Trigger: CATGAAGATAGAAGGGTGATTATAAGGAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGTTAGCAATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTaGAGAAATGAAGTGATATCCCTCTTTACTGCAAGTGATTCTATT +
Preference number: 1 (lower is better)
Translates to: GTLDVLIQVPLLKDV*RNEVISLFTASDSI
Trigger: AATAGAATCACTTGCAGTAAAGAGGGATATCACTTCATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR GCA 90 bp TGTCATTCAGAACAAAAGTTGCTTAGGTTCCCAGAGATGAATAGATaGTACCTTTTACTATCTTCTTGGCTTTGTATACTGATATTTCCT +
Preference number: 1 (lower is better)
Translates to: CHSEQKLLRFPEMNR*YLLLSSWLCILIFP
Trigger: AGGAAATATCAGTATACAAAGCCAAGAAGATAGTAAAAGGTAGCATCTATTCATCTCTGGGAACCTAAGCAACTTTTGTTCTGAATGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR-3UTR CCA 90 bp GAGATGGAGGGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTGGGACACTACATGTGGAGGGAGCTaGGGAGACTGGGCAGAATTG +
Preference number: 2 (lower is better)
Translates to: EMEGKSRLIVKDRILWDTTCGGS*GDWAEL
Trigger: CAATTCTGCCCAGTCTCCCCAGCTCCCTCCACATGT...AGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCCCTCCATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR-3UTR CCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCTATACCAGGCAGGAATaGGATATAGCTGGTGTCATT +
Preference number: 2 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLYTRQE*DIAGVI
Trigger: AATGACACCAGCTATATCCCATTCCTGCCTGGTATA...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR-3UTR GCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCCCAGAGATGAATAGATaGTACCTTTTACTATCTTCT +
Preference number: 2 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLPEMNR*YLLLSS
Trigger: AGAAGATAGTAAAAGGTAGCATCTATTCATCTCTGG...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CAA 90 bp ATTGTCCACAGGAGTAGGTTTTATTTCATAAATGCACATGACACATaGCTAACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCC +
Preference number: 2 (lower is better)
Translates to: IVHRSRFYFINAHDT*LTFTAPLFCIVPVA
Trigger: GGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGTTAGCAATGTGTCATGTGCATTTATGAAATAAAACCTACTCCTGTGGACAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR-3UTR CCA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTGGAGAAATACCTTGAGCCATATGTaGATACATTTATGTAAGTCT +
Preference number: 2 (lower is better)
Translates to: GTLDVLIQVPLLKDVWRNTLSHM*IHLCKS
Trigger: AGACTTACATAAATGTATCCACATATGGCTCAAGGT...ATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 72 bp TTATCTCCATGGCTTTCTAAACTTTGTCCAGACATGTaGAGGGAGCTGGGGAGACTGGGCAGAATTGTGGTT +
Preference number: 3 (lower is better)
Translates to: LSPWLSKLCPDM*RELGRLGRIVV
Trigger: AACCACAATTCTGCCCAGTCTCCCCAGCTCCCTCCACATGTCTGGACAAAGTTTAGAAAGCCATGGAGATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR GCA 72 bp GCAATTCACGTACACAAACCAGGAAATTCTGCAGGTTaGTATACCAGGCAGGAATGGGATATAGCTGGTGTC +
Preference number: 3 (lower is better)
Translates to: AIHVHKPGNSAG*YTRQEWDIAGV
Trigger: GACACCAGCTATATCCCATTCCTGCCTGGTATAGCAACCTGCAGAATTTCCTGGTTTGTGTACGTGAATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR GCA 72 bp CTCAAGTGCAATTCACGTACACAAACCAGGAAATTCTaGAGGTTGCTATACCAGGCAGGAATGGGATATAGC +
Preference number: 3 (lower is better)
Translates to: LKCNSRTQTRKF*RLLYQAGMGYS
Trigger: GCTATATCCCATTCCTGCCTGGTATAGCAACCTGCAGAATTTCCTGGTTTGTGTACGTGAATTGCACTTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 72 bp TGCAGGTTGCTATACCAGGCAGGAATGGGATATAGCTaGTGTCATTCAGAACAAAAGTTGCTTAGGTTCCCA +
Preference number: 3 (lower is better)
Translates to: CRLLYQAGMGYS*CHSEQKLLRFP
Trigger: TGGGAACCTAAGCAACTTTTGTTCTGAATGACACCAGCTATATCCCATTCCTGCCTGGTATAGCAACCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR-3UTR CAA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCCATTCAGAACAAAAGTaGCTTAGGTTCCCAGAGATG +
Preference number: 3 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLHSEQK*LRFPEM
Trigger: CATCTCTGGGAACCTAAGCAACTTTTGTTCTGAATG...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 72 bp ATTCAAAGGACATTGTCACCTTCAGTATTATCTCCATaGCTTTCTAAACTTTGTCCAGACATGTGGAGGGAG +
Preference number: 3 (lower is better)
Translates to: IQRTLSPSVLSP*LSKLCPDMWRE
Trigger: CTCCCTCCACATGTCTGGACAAAGTTTAGAAAGCCATGGAGATAATACTGAAGGTGACAATGTCCTTTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR GCA 72 bp AACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTaGCTTATCTCCCTTCCTCCTTATAATCACCCTTCT +
Preference number: 3 (lower is better)
Translates to: NIYSSIILYSPC*LISLPPYNHPS
Trigger: AGAAGGGTGATTATAAGGAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 72 bp GGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTaGGACACTAGATGTTCTGATTCAAGTACCACTACT +
Preference number: 3 (lower is better)
Translates to: GKSRLIVKDRIL*DTRCSDSSTTT
Trigger: AGTAGTGGTACTTGAATCAGAACATCTAGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CCA 72 bp TTGCCACATGCAAATGATGCTAAAGATGGGCCTATTTaGTATATTTTGGACCTAAGTACCTGTGTTTATTTT +
Preference number: 3 (lower is better)
Translates to: LPHANDAKDGPI*YILDLSTCVYF
Trigger: AAAATAAACACAGGTACTTAGGTCCAAAATATACCAAATAGGCCCATCTTTAGCATCATTTGCATGTGGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR TCA 72 bp AAGTACCACTACTTAAAGATGTGTGGAGAAATGAAGTaGTATCCCTCTTTACTGCAAGTGATTCTATTCAAA +
Preference number: 3 (lower is better)
Translates to: KYHYLKMCGEMK*YPSLLQVILFK
Trigger: TTTGAATAGAATCACTTGCAGTAAAGAGGGATATCACTTCATTTCTCCACACATCTTTAAGTAGTGGTACTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CAA 72 bp TGCAATTCACGTACACAAACCAGGAAATTCTGCAGGTaGCTATACCAGGCAGGAATGGGATATAGCTGGTGT +
Preference number: 4 (lower is better)
Translates to: CNSRTQTRKFCR*LYQAGMGYSWC
Trigger: ACACCAGCTATATCCCATTCCTGCCTGGTATAGCAACCTGCAGAATTTCCTGGTTTGTGTACGTGAATTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR TCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCAGTATGTGTGAGGCATaGTGTGGTGACCACAAAAGG +
Preference number: 4 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLSMCEA*CGDHKR
Trigger: CCTTTTGTGGTCACCACATCATGCCTCACACATACT...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR TCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCAGCGGTCATAAGCCATaGCCACTAGCAAAACAGTTT +
Preference number: 4 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLSGHKP*PLAKQF
Trigger: AAACTGTTTTGCTAGTGGTCATGGCTTATGACCGCT...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR TCA 90 bp GAGATGGAGGGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTGGGACACTAGGGCAGTCTTAGAATaGGAAACACAAACGGAGTCA +
Preference number: 4 (lower is better)
Translates to: EMEGKSRLIVKDRILWDTRAVLE*ETQTES
Trigger: TGACTCCGTTTGTGTTTCTCATTCTAAGACTGCCCT...AGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCCCTCCATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR TCA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTGGAGAAATCAAAGCGGTGAGTCATaGAAGAAAACAGAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: GTLDVLIQVPLLKDVWRNQSGES*KKTELV
Trigger: CACCAGCTCTGTTTTCTTTCATGACTCACCGCTTTG...ATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR GCA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTGGAGAAATTGTACTGGAGAGGTTTaGAGATGGCAACAAAGCGGT +
Preference number: 4 (lower is better)
Translates to: GTLDVLIQVPLLKDVWRNCTGEV*RWQQSG
Trigger: ACCGCTTTGTTGCCATCTGCAAACCTCTCCAGTACA...ATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp GAGATGGAGGGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTGGGACACTAAAGAGGGATGGAACTaGGTGCTATTGATAGAAGAC +
Preference number: 4 (lower is better)
Translates to: EMEGKSRLIVKDRILWDTKEGWN*VLLIED
Trigger: GTCTTCTATCAATAGCACCCAGTTCCATCCCTCTTT...AGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCCCTCCATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCAGGGTTCAGAGCAGGTaGAATGACTACATACAGATT +
Preference number: 4 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLRVQSR*NDYIQI
Trigger: AATCTGTATGTAGTCATTCCACCTGCTCTGAACCCT...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CAA 72 bp GGAATGGGATATAGCTGGTGTCATTCAGAACAAAAGTaGCTTAGGTTCCCAGAGATGAATAGATGCTACCTT +
Preference number: 4 (lower is better)
Translates to: GMGYSWCHSEQK*LRFPEMNRCYL
Trigger: AAGGTAGCATCTATTCATCTCTGGGAACCTAAGCAACTTTTGTTCTGAATGACACCAGCTATATCCCATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp GAGATGGAGGGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTGGGACACTAGCATTATACAGACATaGGAACCACAAGTGTTTAGC +
Preference number: 4 (lower is better)
Translates to: EMEGKSRLIVKDRILWDTSIIQT*EPQVFS
Trigger: GCTAAACACTTGTGGTTCCCATGTCTGTATAATGCT...AGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCCCTCCATCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR TCA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTGGAGAAATTCTTCCAATAACAACTaGGAGAAGAAGGCTGATGGT +
Preference number: 4 (lower is better)
Translates to: GTLDVLIQVPLLKDVWRNSSNNN*EKKADG
Trigger: ACCATCAGCCTTCTTCTCTCAGTTGTTATTGGAAGA...ATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp ACATTTACAGCTCCATTATTCTGTATAGTCCCTGTTGCCTTATCTCCCTTCCTCATACACAAGACAGAATaGGAAAGCAATCCATATATG +
Preference number: 4 (lower is better)
Translates to: TFTAPLFCIVPVALSPFLIHKTE*ESNPYM
Trigger: CATATATGGATTGCTTTCCCATTCTGTCTTGTGTAT...GAGGAAGGGAGATAAGGCAACAGGGACTATACAGAATAATGGAGCTGTAAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp CCCTCTTTACTGCAAGTGATTCTATTCAAAGGACATTGTCACCTTCAGTATTATATGTCCACAAGGATATaGGAAATCACTACGAGTCCA +
Preference number: 4 (lower is better)
Translates to: PSLLQVILFKGHCHLQYYMSTRI*EITTSP
Trigger: TGGACTCGTAGTGATTTCCCATATCCTTGTGGACAT...ATAATACTGAAGGTGACAATGTCCTTTGAATAGAATCACTTGCAGTAAAGAGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CCA 90 bp CCCTCTTTACTGCAAGTGATTCTATTCAAAGGACATTGTCACCTTCAGTATTATATAAAGAAAGAGGGATaGAACTGGGTGCTATTGATA +
Preference number: 4 (lower is better)
Translates to: PSLLQVILFKGHCHLQYYIKKEG*NWVLLI
Trigger: TATCAATAGCACCCAGTTCCATCCCTCTTTCTTTAT...ATAATACTGAAGGTGACAATGTCCTTTGAATAGAATCACTTGCAGTAAAGAGGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
3UTR CAA 72 bp GCAAATGATGCTAAAGATGGGCCTATTTGGTATATTTaGGACCTAAGTACCTGTGTTTATTTTGACCTTAGT +
Preference number: 4 (lower is better)
Translates to: ANDAKDGPIWYI*DLSTCVYFDLS
Trigger: ACTAAGGTCAAAATAAACACAGGTACTTAGGTCCAAAATATACCAAATAGGCCCATCTTTAGCATCATTTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CAA 90 bp GGGACACTAGATGTTCTGATTCAAGTACCACTACTTAAAGATGTGTGGAGAAATCTGATCTCCCGGAGATaGAACCAGAAGATGCCTAAC +
Preference number: 5 (lower is better)
Translates to: GTLDVLIQVPLLKDVWRNLISRR*NQKMPN
Trigger: GTTAGGCATCTTCTGGTTCAATCTCCGGGAGATCAG...ATTTCTCCACACATCTTTAAGTAGTGGTACTTGAATCAGAACATCTAGTGTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CAA 90 bp GAGATGGAGGGAAAGTCTAGGCTTATTGTAAAGGATAGAATTCTGTGGGACACTAAGATGCCTAACATTTaGGGGATAGTAGATGTGGAT +
Preference number: 5 (lower is better)
Translates to: EMEGKSRLIVKDRILWDTKMPNI*GIVDVD
Trigger: ATCCACATCTACTATCCCCAAAATGTTAGGCATCTT...AGTGTCCCACAGAATTCTATCCTTTACAATAAGCCTAGACTTTCCCTCCATCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CAA 90 bp CCCTCTTTACTGCAAGTGATTCTATTCAAAGGACATTGTCACCTTCAGTATTATCTTCAATCGGGCATCTaGAGAGGGAATTCGGAAAAC +
Preference number: 5 (lower is better)
Translates to: PSLLQVILFKGHCHLQYYLQSGI*RGNSEN
Trigger: GTTTTCCGAATTCCCTCTCAAGATGCCCGATTGAAG...ATAATACTGAAGGTGACAATGTCCTTTGAATAGAATCACTTGCAGTAAAGAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS-3UTR CAA 90 bp CCCTCTTTACTGCAAGTGATTCTATTCAAAGGACATTGTCACCTTCAGTATTATAGGCTATGTTCAGTCTaGATCACAAAGAGAATGGTG +
Preference number: 5 (lower is better)
Translates to: PSLLQVILFKGHCHLQYYRLCSV*ITKRMV
Trigger: CACCATTCTCTTTGTGATCAAGACTGAACATAGCCT...ATAATACTGAAGGTGACAATGTCCTTTGAATAGAATCACTTGCAGTAAAGAGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213204.2
CDS CCA 72 bp TGGGAAAGCAATCCATATATGAAAAATTTCCAATCCTaGAATCCCTACCAGGATAAAGAAAGAGGGATGGAA +
Preference number: 6 (lower is better)
Translates to: WESNPYMKNFQS*NPYQDKERGME
Trigger: TTCCATCCCTCTTTCTTTATCCTGGTAGGGATTCCAGGATTGGAAATTTTTCATATATGGATTGCTTTCCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000098161.2
ENSMUST00000213204.2