RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR667 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056782

Ensembl transcript IDs: ENSMUST00000071362.3, ENSMUST00000217177.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTATGGGTCAGAGGTGTAAGTGGGATGGCAACCCCATCCCTCACTTaGTGTCCTGTCTTCCTGCTGGAGGTGGGCTCTATAAGTTCCCTC +
Preference number: 1 (lower is better)
Translates to: LWVRGVSGMATPSLT*CPVFLLEVGSISSL
Trigger: GAGGGAACTTATAGAGCCCACCTCCAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTTGCCATCCCACTTACACCTCTGACCCATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR TCA 90 bp CCTGGGGCCTCCAGTCTCTTGAGTGTTAGATGCTTCATTTCTGAATaGACACAGACCTGGAAGTCCTCTACTGTATGTGTATTAGGGGCC +
Preference number: 1 (lower is better)
Translates to: PGASSLLSVRCFISE*TQTWKSSTVCVLGA
Trigger: GGCCCCTAATACACATACAGTAGAGGACTTCCAGGTCTGTGTTCATTCAGAAATGAAGCATCTAACACTCAAGAGACTGGAGGCCCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR GCA 90 bp GTCCTCTACTGTATGTGTATTAGGGGCCTCATATCAGCTGGTGTATaGTATCTGTTTGGTTGTCCAGTATTTGAAAGAACTCAGGGGTCC +
Preference number: 1 (lower is better)
Translates to: VLYCMCIRGLISAGV*YLFGCPVFERTQGS
Trigger: GGACCCCTGAGTTCTTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCCTAATACACATACAGTAGAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCAAAGGTCCCTCCCTGTaGGTCCTGGGAGTCTTTTAC +
Preference number: 2 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSKGPSL*VLGVFY
Trigger: GTAAAAGACTCCCAGGACTCACAGGGAGGGACCTTT...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCAATAGTGTGAGGCCTTaGAACCTCCCCTTGAGCTGG +
Preference number: 2 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSNSVRP*NLPLSW
Trigger: CCAGCTCAAGGGGAGGTTCCAAGGCCTCACACTATT...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 90 bp ATTATGGGTCAGAGGTGTAAGTGGGATGGCAACCCCATCCCTCACTaGATGTCCTGTCTTCCTGCTGGAGGTGGGCTCTATAAGTTCCCT +
Preference number: 2 (lower is better)
Translates to: IMGQRCKWDGNPIPH*MSCLPAGGGLYKFP
Trigger: AGGGAACTTATAGAGCCCACCTCCAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTTGCCATCCCACTTACACCTCTGACCCATAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCGCTGCTTCAGTCCATTaGTTGGGTGCAAATAACTGC +
Preference number: 2 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSAASVH*LGANNC
Trigger: GCAGTTATTTGCACCCAACCAATGGACTGAAGCAGC...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCCTTTGGGACTGTCACTaGACTTTCTTTTCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSLWDCH*TFFSSG
Trigger: GCCTGAGGAAAAGAAAGTTCAGTGACAGTCCCAAAG...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAACCTCCCTGTGAGTCCTaGGAGTCTTTTACCTCCCAG +
Preference number: 2 (lower is better)
Translates to: GASYQLVYAICLVVQYLKPPCES*ESFTSQ
Trigger: CTGGGAGGTAAAAGACTCCCAGGACTCACAGGGAGG...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCGCAAATAACTGCATCTaGCTCTTTCAGCTGCTTGTT +
Preference number: 2 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSANNCI*LFQLLV
Trigger: AACAAGCAGCTGAAAGAGTCAGATGCAGTTATTTGC...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAAACCTCCACCCCACCTaGCCTCTGAATTCCCTGGGG +
Preference number: 2 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRNLHPT*PLNSLG
Trigger: CCCCAGGGAATTCAGAGGTCAGGTGGGGTGGAGGTT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAACCCTCTCCCTACTGTTaGGCATTTCATCAAAGGTCC +
Preference number: 2 (lower is better)
Translates to: GASYQLVYAICLVVQYLKPSPYC*AFHQRS
Trigger: GGACCTTTGATGAAATGCCCAACAGTAGGGAGAGGG...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCCTTCAGTCCATTGGTTaGGTGCAAATAACTGCATCT +
Preference number: 2 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSLQSIG*VQITAS
Trigger: AGATGCAGTTATTTGCACCCAACCAATGGACTGAAG...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAACCCCATCCCTCACTTaGTGTCCTGTCTTCCTGCTG +
Preference number: 2 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRTPSLT*CPVFLL
Trigger: CAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCATAGATCCATTTTTGTaGGTATTCCATAGCCTCAGT +
Preference number: 2 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSIDPFL*VFHSLS
Trigger: ACTGAGGCTATGGAATACTCACAAAAATGGATCTAT...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR GCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCCCTCTTCAAACACAATaGAACCATGAGGCTATAAAT +
Preference number: 2 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSPLQTQ*NHEAIN
Trigger: ATTTATAGCCTCATGGTTGCATTGTGTTTGAAGAGG...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAAGACAGGAACAATTATaGGTCAGAGGTGTAAGTGGG +
Preference number: 2 (lower is better)
Translates to: GASYQLVYAICLVVQYLKRQEQL*VRGVSG
Trigger: CCCACTTACACCTCTGACCCATAATTGTTCCTGTCT...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 90 bp ATTGGTTGGGTGCAAATAACTGCATCTGACTCTTTCAGCTGCTTGTaGGGTCTTTCGGAAGGCAATCATGATAGATCCATTTTTGTGAGT +
Preference number: 2 (lower is better)
Translates to: IGWVQITASDSFSCL*GLSEGNHDRSIFVS
Trigger: ACTCACAAAAATGGATCTATCATGATTGCCTTCCGAAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGTTATTTGCACCCAACCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR TCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGATGCTTCATTTCTGAATaGACACAGACCTGGAAGTCC +
Preference number: 2 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRCFISE*TQTWKS
Trigger: GGACTTCCAGGTCTGTGTTCATTCAGAAATGAAGCA...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR GCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAATATCAGCTGGTGTATaGTATCTGTTTGGTTGTCCA +
Preference number: 2 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRISAGV*YLFGCP
Trigger: TGGACAACCAAACAGATAGCATACACCAGCTGATAT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR TCA 72 bp AGAGGTGTAAGTGGGATGGCAACCCCATCCCTCACTTaGTGTCCTGTCTTCCTGCTGGAGGTGGGCTCTATA +
Preference number: 3 (lower is better)
Translates to: RGVSGMATPSLT*CPVFLLEVGSI
Trigger: TATAGAGCCCACCTCCAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTTGCCATCCCACTTACACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR TCA 72 bp CCTACTGTTGGGCATTTCATCAAAGGTCCCTCCCTGTaGGTCCTGGGAGTCTTTTACCTCCCAGATCTCTGG +
Preference number: 3 (lower is better)
Translates to: PTVGHFIKGPSL*VLGVFYLPDLW
Trigger: CCAGAGATCTGGGAGGTAAAAGACTCCCAGGACTCACAGGGAGGGACCTTTGATGAAATGCCCAACAGTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR TCA 72 bp GCTTCAGTCCATTGGTTGGGTGCAAATAACTGCATCTaGCTCTTTCAGCTGCTTGTTGGGTCTTTCGGAAGG +
Preference number: 3 (lower is better)
Translates to: ASVHWLGANNCI*LFQLLVGSFGR
Trigger: CCTTCCGAAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGTTATTTGCACCCAACCAATGGACTGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CAA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAAACCCCATCCCTCACTaGATGTCCTGTCTTCCTGCT +
Preference number: 3 (lower is better)
Translates to: GASYQLVYAICLVVQYLKNPIPH*MSCLPA
Trigger: AGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTT...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CAA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAGGTCCTCCTACAGAATaGCCCTTCTTCTCGGGTTCT +
Preference number: 3 (lower is better)
Translates to: GASYQLVYAICLVVQYLKGPPTE*PFFSGS
Trigger: AGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACC...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CAA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAATCCCTCTCCCTACTGTaGGGCATTTCATCAAAGGTC +
Preference number: 3 (lower is better)
Translates to: GASYQLVYAICLVVQYLKSLSLL*GISSKV
Trigger: GACCTTTGATGAAATGCCCAACAGTAGGGAGAGGGA...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CCA 72 bp TTCCATCCCTGTAATTCTTTCAGACAGGAACAATTATaGGTCAGAGGTGTAAGTGGGATGGCAACCCCATCC +
Preference number: 3 (lower is better)
Translates to: FHPCNSFRQEQL*VRGVSGMATPS
Trigger: GGATGGGGTTGCCATCCCACTTACACCTCTGACCCATAATTGTTCCTGTCTGAAAGAATTACAGGGATGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR-3UTR CAA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAATCTTTCAGCTGCTTGTaGGGTCTTTCGGAAGGCAAT +
Preference number: 3 (lower is better)
Translates to: GASYQLVYAICLVVQYLKSFSCL*GLSEGN
Trigger: ATTGCCTTCCGAAAGACCCAACAAGCAGCTGAAAGA...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR GCA 72 bp TGTATGTGTATTAGGGGCCTCATATCAGCTGGTGTATaGTATCTGTTTGGTTGTCCAGTATTTGAAAGAACT +
Preference number: 3 (lower is better)
Translates to: CMCIRGLISAGV*YLFGCPVFERT
Trigger: AGTTCTTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCCTAATACACATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CCA 72 bp TCTACAATGTTTTCTGTGTATTTCGGTCTATTACAATaGACACAACTAGATGAGCTGACACCATTCACCTTA +
Preference number: 3 (lower is better)
Translates to: STMFSVYFGLLQ*TQLDELTPFTL
Trigger: TAAGGTGAATGGTGTCAGCTCATCTAGTTGTGTCCATTGTAATAGACCGAAATACACAGAAAACATTGTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 72 bp CAGAGGTGTAAGTGGGATGGCAACCCCATCCCTCACTaGATGTCCTGTCTTCCTGCTGGAGGTGGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: QRCKWDGNPIPH*MSCLPAGGGLY
Trigger: ATAGAGCCCACCTCCAGCAGGAAGACAGGACATCAAGTGAGGGATGGGGTTGCCATCCCACTTACACCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 72 bp CTGGAGGTGGGCTCTATAAGTTCCCTCTCCCTACTGTaGGGCATTTCATCAAAGGTCCCTCCCTGTGAGTCC +
Preference number: 4 (lower is better)
Translates to: LEVGSISSLSLL*GISSKVPPCES
Trigger: GGACTCACAGGGAGGGACCTTTGATGAAATGCCCAACAGTAGGGAGAGGGAACTTATAGAGCCCACCTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 72 bp GAGGCCTTGGAACCTCCCCTTGAGCTGGATCCCACTTaGGGACTGTCACTGAACTTTCTTTTCCTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: EALEPPLELDPT*GLSLNFLFLRL
Trigger: GAGCCTGAGGAAAAGAAAGTTCAGTGACAGTCCCAAAGTGGGATCCAGCTCAAGGGGAGGTTCCAAGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR GCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCGTGGGGAATAGTATGTaGTCCAAAACGATGAGTGAA +
Preference number: 4 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSVGNSM*SKTMSE
Trigger: TTCACTCATCGTTTTGGAGCACATACTATTCCCCAC...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCGACTCCATAAACAATTaGGTTCATGGTAGCAGGCAA +
Preference number: 4 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSDSINN*VHGSRQ
Trigger: TTGCCTGCTACCATGAACCCAATTGTTTATGGAGTC...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR TCA 90 bp GACTGCTGGTCCTCCTACAGAATTGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCATAAGGTTATATCAGTaGAGGAGAGCAGGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: DCWSSYRIALLLGFFQPSIRLYQ*RRAGLE
Trigger: TTCTAACCCTGCTCTCCTTCACTGATATAACCTTAT...GGAAGGCTGAAAGAACCCGAGAAGAAGGGCAATTCTGTAGGAGGACCAGCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR TCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCGACCATAGACTGCATTaGTTTTCACATTGCCACAGG +
Preference number: 4 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSDHRLH*FSHCHR
Trigger: CCTGTGGCAATGTGAAAATCAATGCAGTCTATGGTC...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CCA 90 bp TGCCCTTCTTCTCGGGTTCTTTCAGCCTTCCCTAATTCAACAACAGGAGTCAGCGTACATGAAACAGAATaGCAGAGAGATCCAGACATG +
Preference number: 4 (lower is better)
Translates to: CPSSRVLSAFPNSTTGVSVHETE*QRDPDM
Trigger: CATGTCTGGATCTCTCTGCCATTCTGTTTCATGTAC...GCTGACTCCTGTTGTTGAATTAGGGAAGGCTGAAAGAACCCGAGAAGAAGGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR TCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAACAGACTCTGTTGCTGTaGAGGTATGCACAAAGAACA +
Preference number: 4 (lower is better)
Translates to: GASYQLVYAICLVVQYLKQTLLL*RYAQRT
Trigger: TGTTCTTTGTGCATACCTTCACAGCAACAGAGTCTG...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR TCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAAGTAGGCATGGGGGATaGGGTTTCCTCGGCAATAGG +
Preference number: 4 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRSRHGG*GFLGNR
Trigger: CCTATTGCCGAGGAAACCTCATCCCCCATGCCTACT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAATGATGTGGATGTGGTaGGGAATAGTATGTGCTCCA +
Preference number: 4 (lower is better)
Translates to: GASYQLVYAICLVVQYLKMMWMW*GIVCAP
Trigger: TGGAGCACATACTATTCCCCACCACATCCACATCAT...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAATTTGCCACTATGATGTaGATGTGGTGGGGAATAGTA +
Preference number: 4 (lower is better)
Translates to: GASYQLVYAICLVVQYLKFATMM*MWWGIV
Trigger: TACTATTCCCCACCACATCCACATCATAGTGGCAAA...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
3UTR CAA 72 bp GTGCAAATAACTGCATCTGACTCTTTCAGCTGCTTGTaGGGTCTTTCGGAAGGCAATCATGATAGATCCATT +
Preference number: 4 (lower is better)
Translates to: VQITASDSFSCL*GLSEGNHDRSI
Trigger: AATGGATCTATCATGATTGCCTTCCGAAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGTTATTTGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR GCA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAACAGAATATGTCAAATaGACAAACCACAAGAGCAAC +
Preference number: 4 (lower is better)
Translates to: GASYQLVYAICLVVQYLKTEYVK*TNHKSN
Trigger: GTTGCTCTTGTGGTTTGTGCATTTGACATATTCTGT...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR GCA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAAGACAGGTTCATCACTaGTCTCAATATCATTGTGTA +
Preference number: 4 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRRQVHH*SQYHCV
Trigger: TACACAATGATATTGAGAGCAGTGATGAACCTGTCT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CAA 90 bp GGGGCCTCATATCAGCTGGTGTATGCTATCTGTTTGGTTGTCCAGTATTTGAAAGTAGCAAGACTAGCTTaGGCAATCACAGGGTTGGTC +
Preference number: 5 (lower is better)
Translates to: GASYQLVYAICLVVQYLKVARLA*AITGLV
Trigger: GACCAACCCTGTGATTGCCAAAGCTAGTCTTGCTAC...TTTCAAATACTGGACAACCAAACAGATAGCATACACCAGCTGATATGAGGCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS TCA 90 bp AAGACAGGTTCATCACTGCTCTCAATATCATTGTGTATGACACAGTaGTACAGAATATGTCAAATGCACAAACCACAAGAGCAACCAGCA +
Preference number: 5 (lower is better)
Translates to: KTGSSLLSISLCMTQ*YRICQMHKPQEQPA
Trigger: TGCTGGTTGCTCTTGTGGTTTGTGCATTTGACATATTCTGTATCACTGTGTCATACACAATGATATTGAGAGCAGTGATGAACCTGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071362.3
ENSMUST00000217177.2
CDS TCA 90 bp ATCAGCAGAAGACAGGTTCATCACTGCTCTCAATATCATTGTGTATaGCACAGTGATACAGAATATGTCAAATGCACAAACCACAAGAGC +
Preference number: 5 (lower is better)
Translates to: ISRRQVHHCSQYHCV*HSDTEYVKCTNHKS
Trigger: GCTCTTGTGGTTTGTGCATTTGACATATTCTGTATCACTGTGTCATACACAATGATATTGAGAGCAGTGATGAACCTGTCTTCTGCTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071362.3
ENSMUST00000217177.2
CDS-3UTR CAA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAGCATTGATTTTCACATaGCCACAGGATATCTTGGCC +
Preference number: 5 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRALIFT*PQDILA
Trigger: GGCCAAGATATCCTGTGGCAATGTGAAAATCAATGC...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS-3UTR CAA 90 bp ATGGCCAACATTTACTCTGAAATCCAATGCTACAGAGTTGGTTTCTCAAAAAGAAATATACACAGCATATaGGGTACAGTAGTGGTACAT +
Preference number: 5 (lower is better)
Translates to: MANIYSEIQCYRVGFSKRNIHSI*GTVVVH
Trigger: ATGTACCACTACTGTACCCAATATGCTGTGTATATT...TCTTTTTGAGAAACCAACTCTGTAGCATTGGATTTCAGAGTAAATGTTGGCCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217177.2
CDS CAA 90 bp TTAAATCCAATCTTCTTGAGGTTGAACCAGAATATACACAGCATATaGGGTACAGTAGTGGTACATAAGGTTATATCAGTGAAGGAGAGC +
Preference number: 6 (lower is better)
Translates to: LNPIFLRLNQNIHSI*GTVVVHKVISVKES
Trigger: GCTCTCCTTCACTGATATAACCTTATGTACCACTACTGTACCCAATATGCTGTGTATATTCTGGTTCAACCTCAAGAAGATTGGATTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071362.3
ENSMUST00000217177.2
CDS TCA 72 bp AGACAGGTTCATCACTGCTCTCAATATCATTGTGTATaGCACAGTGATACAGAATATGTCAAATGCACAAAC +
Preference number: 6 (lower is better)
Translates to: RQVHHCSQYHCV*HSDTEYVKCTN
Trigger: GTTTGTGCATTTGACATATTCTGTATCACTGTGTCATACACAATGATATTGAGAGCAGTGATGAACCTGTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071362.3
ENSMUST00000217177.2
CDS CAA 72 bp ATCTTCTTGAGGTTGAACCAGAATATACACAGCATATaGGGTACAGTAGTGGTACATAAGGTTATATCAGTG +
Preference number: 6 (lower is better)
Translates to: IFLRLNQNIHSI*GTVVVHKVISV
Trigger: CACTGATATAACCTTATGTACCACTACTGTACCCAATATGCTGTGTATATTCTGGTTCAACCTCAAGAAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071362.3
ENSMUST00000217177.2