Pregenerated sensors for OLFR661 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073920Ensembl transcript IDs: ENSMUST00000098168.5, ENSMUST00000214876.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAAAACATGGTGACACTTCCTGGTCTCCCTCCTCACCCTGTGAAATaGCTACCCTCTGGATATCAAAAGAGTAAGCTAAGTGCAGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: KNMVTLPGLPPHPVK*LPSGYQKSKLSAVR Trigger: CCTGACTGCACTTAGCTTACTCTTTTGATATCCAGAGGGTAGCCATTTCACAGGGTGAGGAGGGAGACCAGGAAGTGTCACCATGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCCTGGAACTTGCTATGTACAGGTTAGCCTCAAACTTGCCTATGTTTCTCAATCCCTCCTCACCCTGTaGAATGGCTACCCTCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: WPGTCYVQVSLKLAYVSQSLLTL*NGYPLD Trigger: ATCCAGAGGGTAGCCATTTCACAGGGTGAGGAGGGA...TTGAGAAACATAGGCAAGTTTGAGGCTAACCTGTACATAGCAAGTTCCAGGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR CCA 90 bp | GTCATTTCCAGCTATCCCATTTGGTCCAGGGAAACATCAACGTTCATATTCCCTCATGGTGACACTTCCTaGTCTCCCTCCTCACCCTGT | + |
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Preference number: 2 (lower is better) Translates to: VISSYPIWSRETSTFIFPHGDTS*SPSSPC Trigger: ACAGGGTGAGGAGGGAGACCAGGAAGTGTCACCATG...AGGGAATATGAACGTTGATGTTTCCCTGGACCAAATGGGATAGCTGGAAATGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCGAGGACTATCTGGATTaGAAACCACTCGATGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: QAFPFNLTPGHVESQFVSEDYLD*KPLDVL Trigger: CAAAACATCGAGTGGTTTTCAATCCAGATAGTCCTC...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCCCTAGAAAGAATAAGTaGCTGTATGATGATCAACAC | + |
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Preference number: 2 (lower is better) Translates to: QAFPFNLTPGHVESQFVSPRKNK*LYDDQH Trigger: GTGTTGATCATCATACAGGCACTTATTCTTTCTAGG...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTTAAATCATGGTCTCAACTGTGTAACTCTGGCTTGGCCTGGAACTTGCTATCGTTCATATTCCCTATaGAAGGCTTTACTGAATTGC | + |
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Preference number: 2 (lower is better) Translates to: FLNHGLNCVTLAWPGTCYRSYSL*KALLNC Trigger: GCAATTCAGTAAAGCCTTTCATAGGGAATATGAACG...ATAGCAAGTTCCAGGCCAAGCCAGAGTTACACAGTTGAGACCATGATTTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR GCA 90 bp | CTAAACATCAGAAAACCAGTACTGTATGAGATGTTAATGTGTGTTCCTTACAGAATGTACATTAACCTGTaGTTAGGGAAGGGAGCAATA | + |
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Preference number: 2 (lower is better) Translates to: LNIRKPVLYEMLMCVPYRMYINL*LGKGAI Trigger: TATTGCTCCCTTCCCTAAGCACAGGTTAATGTACAT...TCTGTAAGGAACACACATTAACATCTCATACAGTACTGGTTTTCTGATGTTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR TCA 90 bp | CTAAACATCAGAAAACCAGTACTGTATGAGATGTTAATGTGTGTTCCTTACAGATTGTTGTTTTTAACATaGTCTGCACATCTCTGGACT | + |
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Preference number: 2 (lower is better) Translates to: LNIRKPVLYEMLMCVPYRLLFLT*SAHLWT Trigger: AGTCCAGAGATGTGCAGATCATGTTAAAAACAACAA...TCTGTAAGGAACACACATTAACATCTCATACAGTACTGGTTTTCTGATGTTTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR CCA 72 bp | TGTAACCTGGCTGGTGTCATTTCCAGCTATCCCATTTaGTCCAGGGAAACATCAACGTTCATATTCCCTATG | + |
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Preference number: 3 (lower is better) Translates to: CNLAGVISSYPI*SRETSTFIFPM Trigger: CATAGGGAATATGAACGTTGATGTTTCCCTGGACCAAATGGGATAGCTGGAAATGACACCAGCCAGGTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR TCA 72 bp | GCTAAGTGCAGTCAGGTTCAAGAGGACTATCTGGATTaGAAACCACTCGATGTTTTGATGGGAATTGAATTG | + |
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Preference number: 3 (lower is better) Translates to: AKCSQVQEDYLD*KPLDVLMGIEL Trigger: CAATTCAATTCCCATCAAAACATCGAGTGGTTTTCAATCCAGATAGTCCTCTTGAACCTGACTGCACTTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR CCA 72 bp | TTTTTAAATCATGGTCTCAACTGTGTAACTCTGGCTTaGCCTGGAACTTGCTATGTACAGGTTAGCCTCAAA | + |
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Preference number: 3 (lower is better) Translates to: FLNHGLNCVTLA*PGTCYVQVSLK Trigger: TTTGAGGCTAACCTGTACATAGCAAGTTCCAGGCCAAGCCAGAGTTACACAGTTGAGACCATGATTTAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTTAAATCATGGTCTCAACTGTGTAACTCTGGCTTGGCCTGGAACTTGCTATAGAGGACTATCTGGATaGAAAACCACTCGATGTTTT | + |
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Preference number: 3 (lower is better) Translates to: FLNHGLNCVTLAWPGTCYRGLSG*KTTRCF Trigger: AAAACATCGAGTGGTTTTCAATCCAGATAGTCCTCT...ATAGCAAGTTCCAGGCCAAGCCAGAGTTACACAGTTGAGACCATGATTTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| 3UTR TCA 72 bp | TGTTCTTTGTTGTTGTTGCTGTTGTTGTTTTTAACATaGTCTGCACATCTCTGGACTAGAGGCAAGTCAACT | + |
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Preference number: 3 (lower is better) Translates to: CSLLLLLLLFLT*SAHLWTRGKST Trigger: AGTTGACTTGCCTCTAGTCCAGAGATGTGCAGATCATGTTAAAAACAACAACAGCAACAACAACAAAGAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | AAGGCAAGCAGTTCTCTCAGATTTCAAGGCAAGCCTGGTCTATATAGCCAGTTCAGGGAGAGCCAGTGTTaGCAGCTGTGGATACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KASSSLRFQGKPGLYSQFRESQC*QLWIPG Trigger: TCCAGGTATCCACAGCTGGCAACACTGGCTCTCCCT...GAACTGGCTATATAGACCAGGCTTGCCTTGAAATCTGAGAGAACTGCTTGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR TCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCGCAGACAAAGATGCCTaGCTCCATGGCAACAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: QAFPFNLTPGHVESQFVSADKDA*LHGNKA Trigger: TGCTTTGTTGCCATGGAGTCAGGCATCTTTGTCTGC...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CCA 90 bp | ACTCAGGAAACAAAGGCAAGCAGTTCTCTCAGATTTCAAGGCAAGCCTGGTCTACAAGCCAGGAAGAGCTaGTTGATGCTGTTGATTTTC | + |
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Preference number: 4 (lower is better) Translates to: TQETKASSSLRFQGKPGLQARKS*LMLLIF Trigger: GAAAATCAACAGCATCAACCAGCTCTTCCTGGCTTG...TAGACCAGGCTTGCCTTGAAATCTGAGAGAACTGCTTGCCTTTGTTTCCTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR TCA 90 bp | AAGGCAAGCAGTTCTCTCAGATTTCAAGGCAAGCCTGGTCTATATAGCCAGTTCGAGCCACAAAATTTCTaGTGGCCATTATCACAGTTG | + |
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Preference number: 4 (lower is better) Translates to: KASSSLRFQGKPGLYSQFEPQNF*WPLSQL Trigger: CAACTGTGATAATGGCCATCAGAAATTTTGTGGCTC...GAACTGGCTATATAGACCAGGCTTGCCTTGAAATCTGAGAGAACTGCTTGCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR TCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCTCAGCAGAACCGGGATaGGTGGAATTTTTATTCCTA | + |
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Preference number: 4 (lower is better) Translates to: QAFPFNLTPGHVESQFVSSAEPG*VEFLFL Trigger: TAGGAATAAAAATTCCACTCATCCCGGTTCTGCTGA...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | CAAAAGAGTAAGCTAAGTGCAGTCAGGTTCAAGAGGACTATCTGGATTGAAAACTTTAGATGCAGCTTCTaGAGAGTTCAGCCTCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: QKSKLSAVRFKRTIWIENFRCSF*RVQPQH Trigger: GTGCTGAGGCTGAACTCTGCAGAAGCTGCATCTAAA...GTTTTCAATCCAGATAGTCCTCTTGAACCTGACTGCACTTAGCTTACTCTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCCAGTGGTTTGCAAATTaGCACATACCTATCTATAGC | + |
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Preference number: 4 (lower is better) Translates to: QAFPFNLTPGHVESQFVSQWFAN*HIPIYS Trigger: GCTATAGATAGGTATGTGGCAATTTGCAAACCACTG...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | CTCAGGAAACAAAGGCAAGCAGTTCTCTCAGATTTCAAGGCAAGCCTGGTCTATAGTATCTCAGTGGTTTaGAAATTGCCACATACCTAT | + |
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Preference number: 4 (lower is better) Translates to: LRKQRQAVLSDFKASLVYSISVV*KLPHTY Trigger: ATAGGTATGTGGCAATTTGCAAACCACTGAGATACT...ATAGACCAGGCTTGCCTTGAAATCTGAGAGAACTGCTTGCCTTTGTTTCCTGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCCTCTTTATTCTTAAGTaGATACACCATGGGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: QAFPFNLTPGHVESQFVSLFILK*IHHGVQ Trigger: CTGAACCCCATGGTGTATGCACTTAAGAATAAAGAG...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CCA 90 bp | TTTTTAAATCATGGTCTCAACTGTGTAACTCTGGCTTGGCCTGGAACTTGCTATCCAGCTGTGGATACCTaGAAATCCCATGAGAATGAA | + |
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Preference number: 4 (lower is better) Translates to: FLNHGLNCVTLAWPGTCYPAVDT*KSHENE Trigger: TTCATTCTCATGGGATTTCCAGGTATCCACAGCTGG...ATAGCAAGTTCCAGGCCAAGCCAGAGTTACACAGTTGAGACCATGATTTAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CCA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCCAGAACCGGGATGAGTaGAATTTTTATTCCTACACT | + |
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Preference number: 4 (lower is better) Translates to: QAFPFNLTPGHVESQFVSQNRDE*NFYSYT Trigger: AGTGTAGGAATAAAAATTCCACTCATCCCGGTTCTG...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CCA 90 bp | GAATTCCTAAACATCAGAAAACCAGTACTGTATGAGATGTTAATGTGTGTTCCTAAATGGTACATAGGCTaGTGTAGTGATGCCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: EFLNIRKPVLYEMLMCVPKWYIG*CSDASW Trigger: CCAAGAGGCATCACTACACCAGCCTATGTACCATTT...AGGAACACACATTAACATCTCATACAGTACTGGTTTTCTGATGTTTAGGAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR GCA 90 bp | CTAAACATCAGAAAACCAGTACTGTATGAGATGTTAATGTGTGTTCCTTACAGAGGCCATTATCACAGTTaGTTTGACCACAAAAGATTC | + |
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Preference number: 4 (lower is better) Translates to: LNIRKPVLYEMLMCVPYRGHYHS*FDHKRF Trigger: GAATCTTTTGTGGTCAAAGCAACTGTGATAATGGCC...TCTGTAAGGAACACACATTAACATCTCATACAGTACTGGTTTTCTGATGTTTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CTCAGGAAACAAAGGCAAGCAGTTCTCTCAGATTTCAAGGCAAGCCTGGTCTATTGGAACCTAGAGCTGTaGGAATCTCTGAGGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: LRKQRQAVLSDFKASLVYWNLEL*ESLRIW Trigger: CCAGATCCTCAGAGATTCCAACAGCTCTAGGTTCCA...ATAGACCAGGCTTGCCTTGAAATCTGAGAGAACTGCTTGCCTTTGTTTCCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCGCAGGGGGAATAACATaGTGCAGCACGTTCAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: QAFPFNLTPGHVESQFVSAGGIT*CSTFSR Trigger: TCTGCTGAACGTGCTGCACAATGTTATTCCCCCTGC...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CTAAACATCAGAAAACCAGTACTGTATGAGATGTTAATGTGTGTTCCTTACAGAGAGGGAGAGCCAGTGTaGCCAGCTGTGGATACCTGG | + |
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Preference number: 5 (lower is better) Translates to: LNIRKPVLYEMLMCVPYREGEPV*PAVDTW Trigger: CCAGGTATCCACAGCTGGCAACACTGGCTCTCCCTC...TCTGTAAGGAACACACATTAACATCTCATACAGTACTGGTTTTCTGATGTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | GTCATTTCCAGCTATCCCATTTGGTCCAGGGAAACATCAACGTTCATATTCCCTAGCTGGTTGATGCTGTaGATTTTCCTGTCATCACAG | + |
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Preference number: 5 (lower is better) Translates to: VISSYPIWSRETSTFIFPSWLML*IFLSSQ Trigger: CTGTGATGACAGGAAAATCAACAGCATCAACCAGCT...AGGGAATATGAACGTTGATGTTTCCCTGGACCAAATGGGATAGCTGGAAATGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | TTTTTAAATCATGGTCTCAACTGTGTAACTCTGGCTTGGCCTGGAACTTGCTATGCCAGGAAGAGCTGGTaGATGCTGTTGATTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: FLNHGLNCVTLAWPGTCYARKSW*MLLIFL Trigger: CAGGAAAATCAACAGCATCAACCAGCTCTTCCTGGC...ATAGCAAGTTCCAGGCCAAGCCAGAGTTACACAGTTGAGACCATGATTTAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CAAAAGAGTAAGCTAAGTGCAGTCAGGTTCAAGAGGACTATCTGGATTGAAAACTCCAGCCTGAGCACCTaGTATAAGCCTTGTTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: QKSKLSAVRFKRTIWIENSSLST*YKPCLS Trigger: GCTCAAACAAGGCTTATACAAGGTGCTCAGGCTGGA...GTTTTCAATCCAGATAGTCCTCTTGAACCTGACTGCACTTAGCTTACTCTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CAAGCATTTCCTTTTAACCTTACGCCAGGCCATGTAGAAAGTCAGTTTGTGTCCGTCACAATAAGTATGTaGGCAATGAGAGCCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: QAFPFNLTPGHVESQFVSVTISM*AMRAKT Trigger: TGTCTTGGCTCTCATTGCCAACATACTTATTGTGAC...GGACACAAACTGACTTTCTACATGGCCTGGCGTAAGGTTAAAAGGAAATGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | GTCATTTCCAGCTATCCCATTTGGTCCAGGGAAACATCAACGTTCATATTCCCTAAGATGGCTAAAATCTaGGGCATGATAGTAGTTGCC | + |
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Preference number: 5 (lower is better) Translates to: VISSYPIWSRETSTFIFPKMAKI*GMIVVA Trigger: GGCAACTACTATCATGCCCAAGATTTTAGCCATCTT...AGGGAATATGAACGTTGATGTTTCCCTGGACCAAATGGGATAGCTGGAAATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS TCA 90 bp | TTTATTCTGAAAACAGTAATTTCTCTGAGCAGCCAACACAGGTACTaGCATGGGAGCCACAAAATTTCTGATGGCCATTATCACAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: FILKTVISLSSQHRY*HGSHKISDGHYHSC Trigger: GCAACTGTGATAATGGCCATCAGAAATTTTGTGGCTCCCATGTCAGTACCTGTGTTGGCTGCTCAGAGAAATTACTGTTTTCAGAATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098168.5 ENSMUST00000214876.2 |
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| CDS-3UTR CAA 90 bp | CAAAAGAGTAAGCTAAGTGCAGTCAGGTTCAAGAGGACTATCTGGATTGAAAACTCAGGGAGGCTGATGTaGTTATCATTGAACCATAAG | + |
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Preference number: 5 (lower is better) Translates to: QKSKLSAVRFKRTIWIENSGRLM*LSLNHK Trigger: CTTATGGTTCAATGATAACAACATCAGCCTCCCTGA...GTTTTCAATCCAGATAGTCCTCTTGAACCTGACTGCACTTAGCTTACTCTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214876.2 |
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| CDS CAA 72 bp | TTGACATCCAGCCTGAGCACCTTGTATAAGCCTTGTTaGAGCTCTTTATTCTTAAGTGCATACACCATGGGG | + |
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Preference number: 6 (lower is better) Translates to: LTSSLSTLYKPC*SSLFLSAYTMG Trigger: CCCCATGGTGTATGCACTTAAGAATAAAGAGCTCAAACAAGGCTTATACAAGGTGCTCAGGCTGGATGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098168.5 ENSMUST00000214876.2 |
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| CDS TCA 72 bp | AAAACAGTAATTTCTCTGAGCAGCCAACACAGGTACTaGCATGGGAGCCACAAAATTTCTGATGGCCATTAT | + |
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Preference number: 6 (lower is better) Translates to: KTVISLSSQHRY*HGSHKISDGHY Trigger: ATAATGGCCATCAGAAATTTTGTGGCTCCCATGTCAGTACCTGTGTTGGCTGCTCAGAGAAATTACTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098168.5 ENSMUST00000214876.2 |
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| CDS CCA 72 bp | AACATTGTGCAGCACGTTCAGCAGAACCGGGATGAGTaGAATTTTTATTCCTACACTATGAGTGATGGATAT | + |
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Preference number: 6 (lower is better) Translates to: NIVQHVQQNRDE*NFYSYTMSDGY Trigger: ATATCCATCACTCATAGTGTAGGAATAAAAATTCCACTCATCCCGGTTCTGCTGAACGTGCTGCACAATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098168.5 ENSMUST00000214876.2 |
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