RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR66 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058200

Ensembl transcript IDs: ENSMUST00000079117.2, ENSMUST00000216303.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTCCTGTGAGACTATGACAGTGCCTGGCAAATACAGAAGTGGATaGTCACAGTCATCTATTAGATGGAACACAGGGTCCCCAATGAAG +
Preference number: 1 (lower is better)
Translates to: VSCETMTVPGKYRSG*SQSSIRWNTGSPMK
Trigger: CTTCATTGGGGACCCTGTGTTCCATCTAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGTCATAGTCTCACAGGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR TCA 90 bp CCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTaGCAAGACCCTGATATAGCTGTCTCCTGTGAGACTATGACAGTG +
Preference number: 1 (lower is better)
Translates to: PTMCFLWLHMPTRFC*QDPDIAVSCETMTV
Trigger: CACTGTCATAGTCTCACAGGAGACAGCTATATCAGGGTCTTGTCAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR TCA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTGAACCCACCAGATTCTaGTGGAGACTTTCAGAGTCA +
Preference number: 2 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLEPTRF*WRLSES
Trigger: TGACTCTGAAAGTCTCCATCAGAATCTGGTGGGTTC...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR TCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGCTTTGCCATCTAATCTaGGGCAGAGGATCAAGGAGT +
Preference number: 2 (lower is better)
Translates to: HESYHVFSLVAYANKILLLCHLI*GRGSRS
Trigger: ACTCCTTGATCCTCTGCCTCAGATTAGATGGCAAAG...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR GCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCGAGGATCAAGGAGTTTaGTATGAGATTCCATCTTGT +
Preference number: 2 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPEDQGV*YEIPSC
Trigger: ACAAGATGGAATCTCATAGCAAACTCCTTGATCCTC...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCTTTACTGATGGACCTTaGGAATTAGAGAGTGACTGT +
Preference number: 2 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPFTDGP*ELESDC
Trigger: ACAGTCACTCTCTAATTCCCAAGGTCCATCAGTAAA...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR TCA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCAAAGTCTCACCACAATaGCTGCCTAAACATAAGATC +
Preference number: 2 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCKVSPQ*LPKHKI
Trigger: GATCTTATGTTTAGGCAGTCATTGTGGTGAGACTTT...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGGGTCTGCAGCCCTATTaGAGGAACAACAATATAAAC +
Preference number: 2 (lower is better)
Translates to: HESYHVFSLVAYANKILLGLQPY*RNNNIN
Trigger: GTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACC...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR TCA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTTCCTATATTCCTTTCTaGAAGAAAGGTTGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLSYIPF*KKGWEG
Trigger: TCCTTCCCAACCTTTCTTTCAGAAAGGAATATAGGA...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CCA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCGACAACTCAGGAACATaGAGAGCAGGAGAATTAGTC +
Preference number: 2 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIDNSGT*RAGELV
Trigger: GACTAATTCTCCTGCTCTCCATGTTCCTGAGTTGTC...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CCA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCAGAATGAGGGCTTGTTaGGAGGAGAGAAAATTGATT +
Preference number: 2 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIRMRAC*EERKLI
Trigger: AATCAATTTTCTCTCCTCCCAACAAGCCCTCATTCT...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CAA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCAGGAGACAGATTATCTaGCTTGGTTTAGCTTTCCTC +
Preference number: 3 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCRRQII*LGLAFL
Trigger: GAGGAAAGCTAAACCAAGCAAGATAATCTGTCTCCT...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR TCA 72 bp AATCTCAGAAACTATGCCCGGAAAGTCTCACCACAATaGCTGCCTAAACATAAGATCTACAAGGAAAGGAGT +
Preference number: 3 (lower is better)
Translates to: NLRNYARKVSPQ*LPKHKIYKERS
Trigger: ACTCCTTTCCTTGTAGATCTTATGTTTAGGCAGTCATTGTGGTGAGACTTTCCGGGCATAGTTTCTGAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CAA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGTTTCTTCATTGTTCTTaGCCATCTAATCTGAGGCAG +
Preference number: 3 (lower is better)
Translates to: HESYHVFSLVAYANKILLFLHCS*PSNLRQ
Trigger: CTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAA...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR-3UTR CAA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCATAAAGAATGAGGGCTaGTTGGGAGGAGAGAAAATT +
Preference number: 3 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIIKNEG*LGGEKI
Trigger: AATTTTCTCTCCTCCCAACAAGCCCTCATTCTTTAT...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR GCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCGAGCAGTGCTCCCAGTaGCATCTTCATCACCCTGGA +
Preference number: 4 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPEQCSQ*HLHHPG
Trigger: TCCAGGGTGATGAAGATGGCACTGGGAGCACTGCTC...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCGGACACCCAGCACTGTaGGCATCGTGGTTAGTGTCA +
Preference number: 4 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPGHPAL*ASWLVS
Trigger: TGACACTAACCACGATGCCCACAGTGCTGGGTGTCC...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR TCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCACCAAAAGAGAGGCATaGTTGGGGGCACGATGGACA +
Preference number: 4 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPTKREA*LGARWT
Trigger: TGTCCATCGTGCCCCCAATCATGCCTCTCTTTTGGT...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCGCACTGTGGGCATCGTaGTTAGTGTCATCCCAAGGT +
Preference number: 4 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCALWAS*LVSSQG
Trigger: ACCTTGGGATGACACTAACCACGATGCCCACAGTGC...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR TCA 90 bp AAGAGGTCTGCAGCCCTATTGGAGGAACAACAATATAAACTAACCAGTACCCCCTGCTTTCCAAACCTGTaGATGAAGGTCAGGCCAATC +
Preference number: 4 (lower is better)
Translates to: KRSAALLEEQQYKLTSTPCFPNL*MKVRPI
Trigger: GATTGGCCTGACCTTCATTCACAGGTTTGGAAAGCA...GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGTGTGCAATCTCCCTCTaGTTTAGCACCAGGACACCC +
Preference number: 4 (lower is better)
Translates to: HESYHVFSLVAYANKILLCAISL*FSTRTP
Trigger: GGGTGTCCTGGTGCTAAACCAGAGGGAGATTGCACA...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR GCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGCCCAAGGTCCATACTTaGCAGCACAGCCAAGAAGTA +
Preference number: 4 (lower is better)
Translates to: HESYHVFSLVAYANKILLPKVHT*QHSQEV
Trigger: TACTTCTTGGCTGTGCTGGCAAGTATGGACCTTGGG...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR TCA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCGACACAGCTAATGTGTaGAACACAGGTGTTGAGAGA +
Preference number: 4 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCDTANV*NTGVER
Trigger: TCTCTCAACACCTGTGTTTCACACATTAGCTGTGTC...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR TCA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTTTCCAAACCTGTGAATaGAGGTCAGGCCAATCACAG +
Preference number: 4 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLFQTCE*RSGQSQ
Trigger: CTGTGATTGGCCTGACCTTCATTCACAGGTTTGGAA...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR GCA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTAAATCCTCTGAGCAGTaGTCCCAGTGCCATCTTCAT +
Preference number: 4 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLKSSEQ*SQCHLH
Trigger: ATGAAGATGGCACTGGGAGCACTGCTCAGAGGATTT...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
3UTR CAA 72 bp AAAGTACTCAAGGAGCTAAAGAGGTCTGCAGCCCTATaGGAGGAACAACAATATAAACTAACCAGTACCCCC +
Preference number: 4 (lower is better)
Translates to: KVLKELKRSAAL*EEQQYKLTSTP
Trigger: GGGGGTACTGGTTAGTTTATATTGTTGTTCCTCCAATAGGGCTGCAGACCTCTTTAGCTCCTTGAGTACTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCGAAAGAACATGGGAATaGCAGTATGGGAACCAAAAG +
Preference number: 4 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCERTWE*QYGNQK
Trigger: CTTTTGGTTCCCATACTGCCATTCCCATGTTCTTTC...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGAAGTCCTACTGTGTTTaGACAGTAGACGGAGAACAC +
Preference number: 4 (lower is better)
Translates to: HESYHVFSLVAYANKILLKSYCV*TVDGEH
Trigger: GTGTTCTCCGTCTACTGTCCAAACACAGTAGGACTT...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR GCA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTTGTAATGCAGTGGTGTaGAGATGGCAACAAATCGAT +
Preference number: 4 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLCNAVV*RWQQID
Trigger: ATCGATTTGTTGCCATCTGCACACCACTGCATTACA...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR GCA 90 bp GGACTAAACCACCAATCAAAGAAAACACATGATGGGACTTGCATCTCTAGCTGCAGTAATGTCAGCACATaGCAGTTTCATGACATCTTG +
Preference number: 4 (lower is better)
Translates to: GLNHQSKKTHDGTCISSCSNVST*QFHDIL
Trigger: CAAGATGTCATGAAACTGGCATGTGCTGACATTACT...GCAGCTAGAGATGCAAGTCCCATCATGTGTTTTCTTTGATTGGTGGTTTAGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCAAAGAGAGGCATGATTaGGGGCACGATGGACACAAA +
Preference number: 4 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIKERHD*GHDGHK
Trigger: TTTGTGTCCATCGTGCCCCCAATCATGCCTCTCTTT...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCATCGATCATAAGACATaGCAAGCAAGACCCCCGATT +
Preference number: 4 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIIDHKT*QARPPI
Trigger: AATCGGGGGTCTTGCTTGCCATGTCTTATGATCGAT...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp CACGAGTCCTACCATGTGTTTTCTTTGGTTGCATATGCCAACAAGATTTTGCTGGATGGGGTTCATAAATaGAGGAAAGAGAAAGTAGAC +
Preference number: 4 (lower is better)
Translates to: HESYHVFSLVAYANKILLDGVHK*RKEKVD
Trigger: GTCTACTTTCTCTTTCCTCCATTTATGAACCCCATC...CAGCAAAATCTTGTTGGCATATGCAACCAAAGAAAACACATGGTAGGACTCGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CCA 90 bp ATAGTCAACCTATTTCTTCATTGTTCTTTGCCATCTAATCTGAGGCAGAGGATCAGAGTTGTAATGCAGTaGTGTGCAGATGGCAACAAA +
Preference number: 4 (lower is better)
Translates to: IVNLFLHCSLPSNLRQRIRVVMQ*CADGNK
Trigger: TTTGTTGCCATCTGCACACCACTGCATTACAACTCT...GATCCTCTGCCTCAGATTAGATGGCAAAGAACAATGAAGAAATAGGTTGACTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS GCA 90 bp GAGAGGCATGATTGGGGGCACGATGGACACAAATCCTCTGAGCAGTaGTCCCAGTGCCATCTTCATCACCCTGGAATTGGTAAGGATAGA +
Preference number: 5 (lower is better)
Translates to: ERHDWGHDGHKSSEQ*SQCHLHHPGIGKDR
Trigger: TCTATCCTTACCAATTCCAGGGTGATGAAGATGGCACTGGGAGCACTGCTCAGAGGATTTGTGTCCATCGTGCCCCCAATCATGCCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079117.2
ENSMUST00000216303.2
CDS GCA 90 bp GATTGGGGGCACGATGGACACAAATCCTCTGAGCAGTGCTCCCAGTaGCATCTTCATCACCCTGGAATTGGTAAGGATAGAGTTGTAATG +
Preference number: 5 (lower is better)
Translates to: DWGHDGHKSSEQCSQ*HLHHPGIGKDRVVM
Trigger: CATTACAACTCTATCCTTACCAATTCCAGGGTGATGAAGATGGCACTGGGAGCACTGCTCAGAGGATTTGTGTCCATCGTGCCCCCAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079117.2
ENSMUST00000216303.2
CDS-3UTR CAA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTTCCCAAGGTCCATACTaGCCAGCACAGCCAAGAAGT +
Preference number: 5 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLSQGPY*PAQPRS
Trigger: ACTTCTTGGCTGTGCTGGCAAGTATGGACCTTGGGA...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS-3UTR CAA 90 bp TTGCCATCTAATCTGAGGCAGAGGATCAAGGAGTTTGCTATGAGATTCCATCTTAATGAAACAGGCCCCTaGTGCAATCTCCCTCTGGTT +
Preference number: 5 (lower is better)
Translates to: LPSNLRQRIKEFAMRFHLNETGP*CNLPLV
Trigger: AACCAGAGGGAGATTGCACAAGGGGCCTGTTTCATT...AAGATGGAATCTCATAGCAAACTCCTTGATCCTCTGCCTCAGATTAGATGGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216303.2
CDS GCA 72 bp GATTGGGGGCACGATGGACACAAATCCTCTGAGCAGTaGTCCCAGTGCCATCTTCATCACCCTGGAATTGGT +
Preference number: 6 (lower is better)
Translates to: DWGHDGHKSSEQ*SQCHLHHPGIG
Trigger: ACCAATTCCAGGGTGATGAAGATGGCACTGGGAGCACTGCTCAGAGGATTTGTGTCCATCGTGCCCCCAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079117.2
ENSMUST00000216303.2