RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR646 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073931

Ensembl transcript IDs: ENSMUST00000098182.4, ENSMUST00000214099.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTCTTGTGAGACTAGCCCGGGGCCTAGCAAACACAGAAGTGGATaGTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG +
Preference number: 1 (lower is better)
Translates to: VSCETSPGPSKHRSG*SQSANGWITGLPME
Trigger: CTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGGCTAGTCTCACAAGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 90 bp AGGAACTCAAGCAGAGCGGGAGCTGATGCAGAGGCCAAGGAGAAATaGTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTGCTTTC +
Preference number: 1 (lower is better)
Translates to: RNSSRAGADAEAKEK*CLLACFHGFAQPAF
Trigger: GAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTTGGCCTCTGCATCAGCTCCCGCTCTGCTTGAGTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 90 bp GATCCTGAGACCATCAGCACAGGGGTGGTACCACCCATCATGGCCTaGGTCCTCTCTCATCAATCACTAATTAAGAAAATGCCTGATGGC +
Preference number: 1 (lower is better)
Translates to: DPETISTGVVPPIMA*VLSHQSLIKKMPDG
Trigger: GCCATCAGGCATTTTCTTAATTAGTGATTGATGAGAGAGGACTCAGGCCATGATGGGTGGTACCACCCCTGTGCTGATGGTCTCAGGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 90 bp GGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTaGTTTCTTCTAGATCCTGAGACCATCAGCACAGGGGTGGTACCA +
Preference number: 1 (lower is better)
Translates to: GEMLLTGLLSWICSA*FLLDPETISTGVVP
Trigger: TGGTACCACCCCTGTGCTGATGGTCTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 90 bp AGAGGCCAAGGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTaGTCAGCCTGCTTTCTTCTAGATCCTGAGACCATCAGCACAGGG +
Preference number: 1 (lower is better)
Translates to: RGQGEMLLTGLLSWI*SACFLLDPETISTG
Trigger: CCCTGTGCTGATGGTCTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTTGGCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 90 bp CAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATaGACTAACCAGTACCTGGGAGCTCTTGTCTTTAGCTGCATATGT +
Preference number: 1 (lower is better)
Translates to: QGAKGICNPIGGTTL*TNQYLGALVFSCIC
Trigger: ACATATGCAGCTAAAGACAAGAGCTCCCAGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 90 bp CGAACAGACATAAAAGTAATCAGGACAGCACTTCTGAGAGAAGAGTaGAAATATCATCCCTCTGGACCATTCAGAATTTCTTTAAAAGTC +
Preference number: 1 (lower is better)
Translates to: RTDIKVIRTALLREE*KYHPSGPFRISLKV
Trigger: GACTTTTAAAGAAATTCTGAATGGTCCAGAGGGATGATATTTTCACTCTTCTCTCAGAAGTGCTGTCCTGATTACTTTTATGTCTGTTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CCA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATTGGTACCACCCATCATaGCCTGAGTCCTCTCTCATC +
Preference number: 2 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDWYHPS*PESSLI
Trigger: GATGAGAGAGGACTCAGGCCATGATGGGTGGTACCA...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CCA 90 bp CCAATGGAGGAGCTAGAGAATGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAAAGCTCCTAGATGCCTaGGTCCAGAGCCTATATTAT +
Preference number: 2 (lower is better)
Translates to: PMEELENVPKELKGSATLKLLDA*VQSLYY
Trigger: ATAATATAGGCTCTGGACCCAGGCATCTAGGAGCTT...TAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CCA 90 bp CCAATGGAGGAGCTAGAGAATGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAGATGGCTGGACGTTATaGACACATTTTCTCAATCAA +
Preference number: 2 (lower is better)
Translates to: PMEELENVPKELKGSATLDGWTL*THFLNQ
Trigger: TTGATTGAGAAAATGTGTCCATAACGTCCAGCCATC...TAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CCA 90 bp TTTAAGCTCCTAGATGCCTGGGTCCAGAGCCTATATTATTCCCACCACAAAAGGACTGGCTTGCTTTCATaGATTTGCTCAGCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: FKLLDAWVQSLYYSHHKRTGLLS*ICSACF
Trigger: AAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGT...CCTTTTGTGGTGGGAATAATATAGGCTCTGGACCCAGGCATCTAGGAGCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR TCA 90 bp TTTAAGCTCCTAGATGCCTGGGTCCAGAGCCTATATTATTCCCACCACAAAAGGCTTCTGAGAGAAGAGTaGAAATATCATCCCTCTGGA +
Preference number: 2 (lower is better)
Translates to: FKLLDAWVQSLYYSHHKRLLREE*KYHPSG
Trigger: TCCAGAGGGATGATATTTTCACTCTTCTCTCAGAAG...CCTTTTGTGGTGGGAATAATATAGGCTCTGGACCCAGGCATCTAGGAGCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR GCA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATTGGATTTGCTCAGCCTaGTTTCTTCTAGATCCTGAG +
Preference number: 2 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDWICSA*FLLDPE
Trigger: CTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCA...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR GCA 90 bp CCAATGGAGGAGCTAGAGAATGTACCCAAGGAGCTAAAGGGATCTGCAACCCTAGCTCTTGTCTTTAGCTaGATATGTATCAAAAGATGG +
Preference number: 2 (lower is better)
Translates to: PMEELENVPKELKGSATLALVFS*ICIKRW
Trigger: CCATCTTTTGATACATATGCAGCTAAAGACAAGAGC...TAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 90 bp CTTAGGGTTACTACTGTTTTGATGAAACACCAAGGCCAAAGCCAGTaGGAGAGGAAAGGGTCTATTTCACTCACAGTTCTCTATGACAGT +
Preference number: 2 (lower is better)
Translates to: LRVTTVLMKHQGQSQ*ERKGSISLTVLYDS
Trigger: ACTGTCATAGAGAACTGTGAGTGAAATAGACCCTTTCCTCTCCAACTGGCTTTGGCCTTGGTGTTTCATCAAAACAGTAGTAACCCTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR GCA 90 bp TTTAAGCTCCTAGATGCCTGGGTCCAGAGCCTATATTATTCCCACCACAAAAGGTGTACCTACATGTGTTaGTTAGGGTTACTACTGTTT +
Preference number: 2 (lower is better)
Translates to: FKLLDAWVQSLYYSHHKRCTYMC*LGLLLF
Trigger: AAACAGTAGTAACCCTAAGCAACACATGTAGGTACA...CCTTTTGTGGTGGGAATAATATAGGCTCTGGACCCAGGCATCTAGGAGCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 90 bp AAACTCAATCTTTTCATAAGGCTGGTAACTGACTTCTTTAGGAAGTaGTACCTACATGTGTTGCTTAGGGTTACTACTGTTTTGATGAAA +
Preference number: 2 (lower is better)
Translates to: KLNLFIRLVTDFFRK*YLHVLLRVTTVLMK
Trigger: TTTCATCAAAACAGTAGTAACCCTAAGCAACACATGTAGGTACAACTTCCTAAAGAAGTCAGTTACCAGCCTTATGAAAAGATTGAGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 90 bp GCATTAACTAGATATCATCAACTACTACCTGTCACAATTGAGTATTaGTGTTGTTTCAGATACTACAACAAGCATTTTTCTGAGGTGGAG +
Preference number: 2 (lower is better)
Translates to: ALTRYHQLLPVTIEY*CCFRYYNKHFSEVE
Trigger: CTCCACCTCAGAAAAATGCTTGTTGTAGTATCTGAAACAACACAAATACTCAATTGTGACAGGTAGTAGTTGATGATATCTAGTTAATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 72 bp GAGACTAGCCCGGGGCCTAGCAAACACAGAAGTGGATaGTCACAGTCAGCTAATGGATGGATCACAGGGCTC +
Preference number: 3 (lower is better)
Translates to: ETSPGPSKHRSG*SQSANGWITGL
Trigger: GAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGGCTAGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 72 bp AGCAGAGCGGGAGCTGATGCAGAGGCCAAGGAGAAATaGTGCTTACTGGCTTGCTTTCATGGATTTGCTCAG +
Preference number: 3 (lower is better)
Translates to: SRAGADAEAKEK*CLLACFHGFAQ
Trigger: CTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTTGGCCTCTGCATCAGCTCCCGCTCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 72 bp CTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTaGTTTCTTCTAGATCCTGAGACCATCAGCACAGGG +
Preference number: 3 (lower is better)
Translates to: LLTGLLSWICSA*FLLDPETISTG
Trigger: CCCTGTGCTGATGGTCTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CCA 72 bp GGCCAAGGAGAAATGCTGCTTACTGGCTTGCTTTCATaGATTTGCTCAGCCTGCTTTCTTCTAGATCCTGAG +
Preference number: 3 (lower is better)
Translates to: GQGEMLLTGLLS*ICSACFLLDPE
Trigger: CTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CCA 72 bp GGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAGATaGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAT +
Preference number: 3 (lower is better)
Translates to: GALVFSCICIKR*PSRPSLEREAH
Trigger: ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CAA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATCAAGGCCAAAGCCAGTaGGAGAGGAAAGGGTCTATT +
Preference number: 3 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDQGQSQ*ERKGSI
Trigger: AATAGACCCTTTCCTCTCCAACTGGCTTTGGCCTTG...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 72 bp ACCATCAGCACAGGGGTGGTACCACCCATCATGGCCTaGGTCCTCTCTCATCAATCACTAATTAAGAAAATG +
Preference number: 3 (lower is better)
Translates to: TISTGVVPPIMA*VLSHQSLIKKM
Trigger: CATTTTCTTAATTAGTGATTGATGAGAGAGGACTCAGGCCATGATGGGTGGTACCACCCCTGTGCTGATGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR GCA 72 bp GGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTaGTCAGCCTGCTTTCTTCTAGATCCTGAGACCATC +
Preference number: 3 (lower is better)
Translates to: GEMLLTGLLSWI*SACFLLDPETI
Trigger: GATGGTCTCAGGATCTAGAAGAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CAA 90 bp GTGGAACAACATTATGAACTAACCAGTACCTGGGAGCTCTTGTCTTTAGCTGCAATGCTGCTTACTGGCTaGCTTTCATGGATTTGCTCA +
Preference number: 3 (lower is better)
Translates to: VEQHYELTSTWELLSLAAMLLTG*LSWICS
Trigger: TGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCAT...TGCAGCTAAAGACAAGAGCTCCCAGGTACTGGTTAGTTCATAATGTTGTTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 72 bp GGAGAGGAAAGGGTCTATTTCACTCACAGTTCTCTATaGCAGTTCGTTAACAAAAGCAGTAAGGGCAGGAAC +
Preference number: 3 (lower is better)
Translates to: GEERVYFTHSSL*QFVNKSSKGRN
Trigger: GTTCCTGCCCTTACTGCTTTTGTTAACGAACTGTCATAGAGAACTGTGAGTGAAATAGACCCTTTCCTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CAA 90 bp CAAGGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTGCTTTCATGGTCTGTTTAATTaGACCATTACATTTCCCCTT +
Preference number: 3 (lower is better)
Translates to: QGEMLLTGLLSWICSACFHGLFN*TITFPL
Trigger: AAGGGGAAATGTAATGGTCAAATTAAACAGACCATG...AAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR-3UTR CAA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATGACTTCTTTAGGAAGTaGTACCTACATGTGTTGCTT +
Preference number: 3 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDDFFRK*YLHVLL
Trigger: AAGCAACACATGTAGGTACAACTTCCTAAAGAAGTC...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CCA 72 bp TCTCATCAATCACTAATTAAGAAAATGCCTGATGGCTaGACGTTATGGACACATTTTCTCAATCAAGGTCCC +
Preference number: 3 (lower is better)
Translates to: SHQSLIKKMPDG*TLWTHFLNQGP
Trigger: GGGACCTTGATTGAGAAAATGTGTCCATAACGTCCAGCCATCAGGCATTTTCTTAATTAGTGATTGATGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CCA 72 bp AGCACTTCTGAGAGAAGAGTGAAAATATCATCCCTCTaGACCATTCAGAATTTCTTTAAAAGTCCCATAAAC +
Preference number: 3 (lower is better)
Translates to: STSERRVKISSL*TIQNFFKSPIN
Trigger: GTTTATGGGACTTTTAAAGAAATTCTGAATGGTCCAGAGGGATGATATTTTCACTCTTCTCTCAGAAGTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR TCA 72 bp CATTTCACTAGGCATTCATTCCTCCTCAAACACCATTaGCATATTTCAGATTCATATTGTGGTAATGTAGTT +
Preference number: 3 (lower is better)
Translates to: HFTRHSFLLKHH*HISDSYCGNVV
Trigger: AACTACATTACCACAATATGAATCTGAAATATGTCAATGGTGTTTGAGGAGGAATGAATGCCTAGTGAAATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp CCAATGGAGGAGCTAGAGAATGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATTGAGCATCACGGGATaGAAGACGGAAGACAGCCCG +
Preference number: 4 (lower is better)
Translates to: PMEELENVPKELKGSATLLSITG*KTEDSP
Trigger: CGGGCTGTCTTCCGTCTTCCATCCCGTGATGCTCAA...TAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp CCAATGGAGGAGCTAGAGAATGTACCCAAGGAGCTAAAGGGATCTGCAACCCTACTCAGAGCCTTGTGTTaGGCATCACGGGATGGAAGA +
Preference number: 4 (lower is better)
Translates to: PMEELENVPKELKGSATLLRALC*ASRDGR
Trigger: TCTTCCATCCCGTGATGCTCAACACAAGGCTCTGAG...TAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCCTCCATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp GTGGAACAACATTATGAACTAACCAGTACCTGGGAGCTCTTGTCTTTAGCTGCAATGGCAATCCAGAGGTaGGCGAACTCCAGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: VEQHYELTSTWELLSLAAMAIQR*ANSSPG
Trigger: CCCAGGGCTGGAGTTCGCCCACCTCTGGATTGCCAT...TGCAGCTAAAGACAAGAGCTCCCAGGTACTGGTTAGTTCATAATGTTGTTCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp ATGCCTGATGGCTGGACGTTATGGACACATTTTCTCAATCAAGGTCCCCTCCTCAGTATGTGTGAGTCATaGCACGGTGACCACAGTAGG +
Preference number: 4 (lower is better)
Translates to: MPDGWTLWTHFLNQGPLLSMCES*HGDHSR
Trigger: CCTACTGTGGTCACCGTGTCATGACTCACACATACT...GAGGAGGGGACCTTGATTGAGAAAATGTGTCCATAACGTCCAGCCATCAGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp AAGGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTGCTTTCCATAGGAGATGGCAATaGGGATGGAATCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: KEKCCLLACFHGFAQPAFHRRWQ*GWNPGP
Trigger: TGGGCCTGGATTCCATCCTCATTGCCATCTCCTATG...GAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp ATGCCTGATGGCTGGACGTTATGGACACATTTTCTCAATCAAGGTCCCCTCCTCAAGTCCTTCCCCAAGTaGAGCAGTTTTAGAAGCCGA +
Preference number: 4 (lower is better)
Translates to: MPDGWTLWTHFLNQGPLLKSFPK*SSFRSR
Trigger: TCGGCTTCTAAAACTGCTTCACTTGGGGAAGGACTT...GAGGAGGGGACCTTGATTGAGAAAATGTGTCCATAACGTCCAGCCATCAGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp CTGTTTAATTTGACCATTACATTTCCCCTTCATCTCGCCTCTCGTCTTCCTTCCTGGAATCCAGGCCCATaGCCAGCAAAGCTACAGTCA +
Preference number: 4 (lower is better)
Translates to: LFNLTITFPLHLASRLPSWNPGP*PAKLQS
Trigger: TGACTGTAGCTTTGCTGGCCATGGGCCTGGATTCCA...GGAAGGAAGACGAGAGGCGAGATGAAGGGGAAATGTAATGGTCAAATTAAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATGAGCAACCACATACATaGCACAGAAGGGGATGGCAA +
Preference number: 4 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDEQPHT*HRRGWQ
Trigger: TTGCCATCCCCTTCTGTGTCATGTATGTGGTTGCTC...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp ACAGTTCTCTATGACAGTTCGTTAACAAAAGCAGTAAGGGCAGGAACTCAAGCATTGGGAACTCGATTGTaGCCAAAGCGATGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: TVLYDSSLTKAVRAGTQALGTRL*PKRWVR
Trigger: CCTCACCCATCGCTTTGGTCACAATCGAGTTCCCAA...TGCTTGAGTTCCTGCCCTTACTGCTTTTGTTAACGAACTGTCATAGAGAACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATTGGACACAAAACATCTaGGCGAGGCATCCACCAAAG +
Preference number: 4 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDWTQNI*ARHPPK
Trigger: CTTTGGTGGATGCCTCGCCCAGATGTTTTGTGTCCA...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR TCA 90 bp TTTAAGCTCCTAGATGCCTGGGTCCAGAGCCTATATTATTCCCACCACAAAAGGTATAGAAAACCAGAATaGCACCAAGGTGAGATCCAC +
Preference number: 4 (lower is better)
Translates to: FKLLDAWVQSLYYSHHKRYRKPE*HQGEIH
Trigger: GTGGATCTCACCTTGGTGTCATTCTGGTTTTCTATA...CCTTTTGTGGTGGGAATAATATAGGCTCTGGACCCAGGCATCTAGGAGCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR GCA 90 bp CTGTTTAATTTGACCATTACATTTCCCCTTCATCTCGCCTCTCGTCTTCCTTCCTTAGCCAGGAAGATATaGACATGCTTGGGAACTCGA +
Preference number: 4 (lower is better)
Translates to: LFNLTITFPLHLASRLPSLARKI*TCLGTR
Trigger: TCGAGTTCCCAAGCATGTGCATATCTTCCTGGCTAA...GGAAGGAAGACGAGAGGCGAGATGAAGGGGAAATGTAATGGTCAAATTAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp AAGGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTGCTTTCAGATATGCACATGCTTaGGAACTCGATTGTGACCAA +
Preference number: 4 (lower is better)
Translates to: KEKCCLLACFHGFAQPAFRYAHA*ELDCDQ
Trigger: TTGGTCACAATCGAGTTCCCAAGCATGTGCATATCT...GAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 72 bp ACTACTGTTTTGATGAAACACCAAGGCCAAAGCCAGTaGGAGAGGAAAGGGTCTATTTCACTCACAGTTCTC +
Preference number: 4 (lower is better)
Translates to: TTVLMKHQGQSQ*ERKGSISLTVL
Trigger: GAGAACTGTGAGTGAAATAGACCCTTTCCTCTCCAACTGGCTTTGGCCTTGGTGTTTCATCAAAACAGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 72 bp TTGTACCTACATGTGTTGCTTAGGGTTACTACTGTTTaGATGAAACACCAAGGCCAAAGCCAGTTGGAGAGG +
Preference number: 4 (lower is better)
Translates to: LYLHVLLRVTTV*MKHQGQSQLER
Trigger: CCTCTCCAACTGGCTTTGGCCTTGGTGTTTCATCAAAACAGTAGTAACCCTAAGCAACACATGTAGGTACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp AAGGAGAAATGCTGCTTACTGGCTTGCTTTCATGGATTTGCTCAGCCTGCTTTCACTCAAGAGCATAGATaGAGTGGACACAAAACATCT +
Preference number: 4 (lower is better)
Translates to: KEKCCLLACFHGFAQPAFTQEHR*SGHKTS
Trigger: AGATGTTTTGTGTCCACTCCATCTATGCTCTTGAGT...GAAAGCAGGCTGAGCAAATCCATGAAAGCAAGCCAGTAAGCAGCATTTCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp CTGGACTTTGAGCTCCAGTTGCTACCTGAAGAGGTGAAATGTCAGAACTTAGATGAAATCTCATTAGAATaGAGCCATAGAATGGCCAAC +
Preference number: 4 (lower is better)
Translates to: LDFELQLLPEEVKCQNLDEISLE*SHRMAN
Trigger: GTTGGCCATTCTATGGCTCCATTCTAATGAGATTTC...ATCTAAGTTCTGACATTTCACCTCTTCAGGTAGCAACTGGAGCTCAAAGTCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp CTGTTTAATTTGACCATTACATTTCCCCTTCATCTCGCCTCTCGTCTTCCTTCCCCAGCAAAGATAATTTaGGCTATGACAGTATGGTTG +
Preference number: 4 (lower is better)
Translates to: LFNLTITFPLHLASRLPSPAKII*AMTVWL
Trigger: CAACCATACTGTCATAGCCCAAATTATCTTTGCTGG...GGAAGGAAGACGAGAGGCGAGATGAAGGGGAAATGTAATGGTCAAATTAAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CCA 90 bp ACAGTTCTCTATGACAGTTCGTTAACAAAAGCAGTAAGGGCAGGAACTCAAGCATGGGCTATGACAGTATaGTTGAGGATGGTTGTATAT +
Preference number: 4 (lower is better)
Translates to: TVLYDSSLTKAVRAGTQAWAMTV*LRMVVY
Trigger: ATATACAACCATCCTCAACCATACTGTCATAGCCCA...TGCTTGAGTTCCTGCCCTTACTGCTTTTGTTAACGAACTGTCATAGAGAACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 72 bp GAACAACATTATGAACTAACCAGTACCTGGGAGCTCTaGTCTTTAGCTGCATATGTATCAAAAGATGGCCTA +
Preference number: 4 (lower is better)
Translates to: EQHYELTSTWEL*SLAAYVSKDGL
Trigger: TAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCAGGTACTGGTTAGTTCATAATGTTGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
3UTR CAA 72 bp TCCTTAAATGTGATTTATATAGCCAGTGAGCCTCCATaGAAGAGGACAAATTTTTCCTTTGAAAGCACATTT +
Preference number: 4 (lower is better)
Translates to: SLNVIYIASEPP*KRTNFSFESTF
Trigger: AAATGTGCTTTCAAAGGAAAAATTTGTCCTCTTCAATGGAGGCTCACTGGCTATATAAATCACATTTAAGGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS CCA 90 bp GGGGAGACAATAGCCACACTACGGACTATCCCAGCAAAGATAATTTaGGCTATGACAGTATGGTTGAGGATGGTTGTATATCTCAGTGGG +
Preference number: 5 (lower is better)
Translates to: GETIATLRTIPAKII*AMTVWLRMVVYLSG
Trigger: CCCACTGAGATATACAACCATCCTCAACCATACTGTCATAGCCCAAATTATCTTTGCTGGGATAGTCCGTAGTGTGGCTATTGTCTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098182.4
ENSMUST00000214099.2
CDS-3UTR CAA 90 bp ATGCCTGATGGCTGGACGTTATGGACACATTTTCTCAATCAAGGTCCCCTCCTCGCTATGACAGTATGGTaGAGGATGGTTGTATATCTC +
Preference number: 5 (lower is better)
Translates to: MPDGWTLWTHFLNQGPLLAMTVW*RMVVYL
Trigger: GAGATATACAACCATCCTCAACCATACTGTCATAGC...GAGGAGGGGACCTTGATTGAGAAAATGTGTCCATAACGTCCAGCCATCAGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS-3UTR CAA 90 bp CTGTTTAATTTGACCATTACATTTCCCCTTCATCTCGCCTCTCGTCTTCCTTCCCCCAGCAAAGATAATTaGGGCTATGACAGTATGGTT +
Preference number: 5 (lower is better)
Translates to: LFNLTITFPLHLASRLPSPSKDN*GYDSMV
Trigger: AACCATACTGTCATAGCCCAAATTATCTTTGCTGGG...GGAAGGAAGACGAGAGGCGAGATGAAGGGGAAATGTAATGGTCAAATTAAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214099.2
CDS CCA 72 bp CCATGGCAAGGAGAACCGAGGACTCAAGAGCATAGATaGAGTGGACACAAAACATCTGGGCGAGGCATCCAC +
Preference number: 6 (lower is better)
Translates to: PWQGEPRTQEHR*SGHKTSGRGIH
Trigger: GTGGATGCCTCGCCCAGATGTTTTGTGTCCACTCCATCTATGCTCTTGAGTCCTCGGTTCTCCTTGCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098182.4
ENSMUST00000214099.2
CDS CAA 90 bp AGGGGAGACAATAGCCACACTACGGACTATCCCAGCAAAGATAATTaGGGCTATGACAGTATGGTTGAGGATGGTTGTATATCTCAGTGG +
Preference number: 6 (lower is better)
Translates to: RGDNSHTTDYPSKDN*GYDSMVEDGCISQW
Trigger: CCACTGAGATATACAACCATCCTCAACCATACTGTCATAGCCCAAATTATCTTTGCTGGGATAGTCCGTAGTGTGGCTATTGTCTCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098182.4
ENSMUST00000214099.2
CDS CCA 72 bp ATAGCCACACTACGGACTATCCCAGCAAAGATAATTTaGGCTATGACAGTATGGTTGAGGATGGTTGTATAT +
Preference number: 6 (lower is better)
Translates to: IATLRTIPAKII*AMTVWLRMVVY
Trigger: ATATACAACCATCCTCAACCATACTGTCATAGCCCAAATTATCTTTGCTGGGATAGTCCGTAGTGTGGCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098182.4
ENSMUST00000214099.2
CDS CAA 72 bp AATAGCCACACTACGGACTATCCCAGCAAAGATAATTaGGGCTATGACAGTATGGTTGAGGATGGTTGTATA +
Preference number: 6 (lower is better)
Translates to: NSHTTDYPSKDN*GYDSMVEDGCI
Trigger: TATACAACCATCCTCAACCATACTGTCATAGCCCAAATTATCTTTGCTGGGATAGTCCGTAGTGTGGCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098182.4
ENSMUST00000214099.2