Pregenerated sensors for OLFR644 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000110012Ensembl transcript IDs: ENSMUST00000077417.3, ENSMUST00000213184.2, ENSMUST00000213991.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAATTTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTaGAAGAACATATCTCAAGGCCTTGAAGCAGAGAATGGCATAGCA | + |
|
Preference number: 1 (lower is better) Translates to: RISGAFWLPAFLQVQ*KNISQGLEAENGIA Trigger: TGCTATGCCATTCTCTGCTTCAAGGCCTTGAGATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAAATTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR GCA 90 bp | ACAAGAGAATTTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTaGAGTGAAAGAACATATCTCAAGGCCTTGAAGCAGAGAATGGCA | + |
|
Preference number: 1 (lower is better) Translates to: TREFQELSGYQPSSR*SERTYLKALKQRMA Trigger: TGCCATTCTCTGCTTCAAGGCCTTGAGATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAAATTCTCTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR TCA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCCCTCTATACATTGACTaGCATAACAACATCCTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: FRSFLATSLPPGAVKEHIPLYID*HNNILL Trigger: TAGAAGGATGTTGTTATGTCAGTCAATGTATAGAGG...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR TCA 90 bp | AGAAAGCTGAGTCCTTTCACATTCCCCACCCCAACACTGTCAGAACCCATTAACCCTCTATACATTGACTaGCATAACAACATCCTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: RKLSPFTFPTPTLSEPINPLYID*HNNILL Trigger: TAGAAGGATGTTGTTATGTCAGTCAATGTATAGAGG...GTTAATGGGTTCTGACAGTGTTGGGGTGGGGAATGTGAAAGGACTCAGCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR TCA 90 bp | AGAAAGCTGAGTCCTTTCACATTCCCCACCCCAACACTGTCAGAACCCATTAACAATGTCACTAGGATATaGACTTTGGGAGGAAAATCT | + |
|
Preference number: 2 (lower is better) Translates to: RKLSPFTFPTPTLSEPINNVTRI*TLGGKS Trigger: AGATTTTCCTCCCAAAGTTCATATCCTAGTGACATT...GTTAATGGGTTCTGACAGTGTTGGGGTGGGGAATGTGAAAGGACTCAGCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR TCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCCATATCTCAAGGCCTTaGAGCAGAGAATGGCATAGC | + |
|
Preference number: 2 (lower is better) Translates to: TLAMKWDTCKNKRISGAFHISRP*SREWHS Trigger: GCTATGCCATTCTCTGCTTCAAGGCCTTGAGATATG...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR GCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCCAGCCTTCCTCCAGGTaGAGTGAAAGAACATATCTC | + |
|
Preference number: 2 (lower is better) Translates to: TLAMKWDTCKNKRISGAFQPSSR*SERTYL Trigger: GAGATATGTTCTTTCACTGCACCTGGAGGAAGGCTG...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR CCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCCTAGGATATGAACTTTaGGAGGAAAATCTATTGTCA | + |
|
Preference number: 2 (lower is better) Translates to: TLAMKWDTCKNKRISGAFLGYEL*EENLLS Trigger: TGACAATAGATTTTCCTCCCAAAGTTCATATCCTAG...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR TCA 90 bp | AACTGTGAAGAGCTAAACTTCAGCATCCCTATCACAATTTTTAAGAGTGCTCTTAATGTCACTAGGATATaGACTTTGGGAGGAAAATCT | + |
|
Preference number: 2 (lower is better) Translates to: NCEELNFSIPITIFKSALNVTRI*TLGGKS Trigger: AGATTTTCCTCCCAAAGTTCATATCCTAGTGACATT...AAGAGCACTCTTAAAAATTGTGATAGGGATGCTGAAGTTTAGCTCTTCACAGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR TCA 72 bp | GGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTaGAAGAACATATCTCAAGGCCTTGAAGCAGAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: GAFWLPAFLQVQ*KNISQGLEAEN Trigger: ATTCTCTGCTTCAAGGCCTTGAGATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR GCA 72 bp | TTTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTaGAGTGAAAGAACATATCTCAAGGCCTTGAAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: FQELSGYQPSSR*SERTYLKALKQ Trigger: CTGCTTCAAGGCCTTGAGATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCTTCTTCCCACCTCTGTaGACTCACACCCCATTCTTA | + |
|
Preference number: 3 (lower is better) Translates to: FRSFLATSLPPGAVKEHIFFPPL*THTPFL Trigger: TAAGAATGGGGTGTGAGTCAACAGAGGTGGGAAGAA...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR TCA 72 bp | CCTCCAGGTGCAGTGAAAGAACATATCTCAAGGCCTTaGAGCAGAGAATGGCATAGCAAGACATGCATTATC | + |
|
Preference number: 3 (lower is better) Translates to: PPGAVKEHISRP*SREWHSKTCII Trigger: GATAATGCATGTCTTGCTATGCCATTCTCTGCTTCAAGGCCTTGAGATATGTTCTTTCACTGCACCTGGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCAACATCCTCTATACATaGACTGACATAACAACATCC | + |
|
Preference number: 3 (lower is better) Translates to: FRSFLATSLPPGAVKEHINILYT*TDITTS Trigger: GGATGTTGTTATGTCAGTCAATGTATAGAGGATGTT...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR CAA 90 bp | AGAAAGCTGAGTCCTTTCACATTCCCCACCCCAACACTGTCAGAACCCATTAACAACATCCTCTATACATaGACTGACATAACAACATCC | + |
|
Preference number: 3 (lower is better) Translates to: RKLSPFTFPTPTLSEPINNILYT*TDITTS Trigger: GGATGTTGTTATGTCAGTCAATGTATAGAGGATGTT...GTTAATGGGTTCTGACAGTGTTGGGGTGGGGAATGTGAAAGGACTCAGCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR TCA 72 bp | AGAGAATGGCATAGCAAGACATGCATTATCCTCTTCTaGTCACTCCACATTCACATAGGCAAATACACCCAC | + |
|
Preference number: 3 (lower is better) Translates to: REWHSKTCIILF*SLHIHIGKYTH Trigger: GTGGGTGTATTTGCCTATGTGAATGTGGAGTGATCAGAAGAGGATAATGCATGTCTTGCTATGCCATTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCGGTTCTAATGTAACATaGAAATCAACTTCACCATGG | + |
|
Preference number: 3 (lower is better) Translates to: TLAMKWDTCKNKRISGAFGSNVT*KSTSPW Trigger: CCATGGTGAAGTTGATTTCAATGTTACATTAGAACC...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCGCAGTCCTGTCAAGATaGAGGGAGGCAACCCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: FRSFLATSLPPGAVKEHIAVLSR*REATQS Trigger: GCTCTGGGTTGCCTCCCTTCATCTTGACAGGACTGC...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CCA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCAGCGATCAAAGCTCATaGCCAGCAGAATCCCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: FRSFLATSLPPGAVKEHISDQSS*PAESQT Trigger: AGTCTGGGATTCTGCTGGCCATGAGCTTTGATCGCT...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CCA 90 bp | GACGTTCTGTCTAGACTGATGTTTTTCTTTGTGAGGGTTGCAGGAACATTTTCAAGGAACAACCAGTGCTaGGAGGTCTCCATCCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: DVLSRLMFFFVRVAGTFSRNNQC*EVSIPG Trigger: GCCAGGGATGGAGACCTCCCAGCACTGGTTGTTCCT...TGAAAATGTTCCTGCAACCCTCACAAAGAAAAACATCAGTCTAGACAGAACGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CCA 90 bp | TCTGTTGACTCACACCCCATTCTTAGAAAAATATCAAGTCCAATTTGTGATGCCAGGAACAACCAGTGCTaGGAGGTCTCCATCCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SVDSHPILRKISSPICDARNNQC*EVSIPG Trigger: GCCAGGGATGGAGACCTCCCAGCACTGGTTGTTCCT...GGCATCACAAATTGGACTTGATATTTTTCTAAGAATGGGGTGTGAGTCAACAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CCA 90 bp | AAGAACAAGAGAATTTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGGACAGGGTTGAGCATTaGAGGAACAAAGAGATAGAT | + |
|
Preference number: 4 (lower is better) Translates to: KNKRISGAFWLPAFLQVQDRVEH*RNKEID Trigger: ATCTATCTCTTTGTTCCTCCAATGCTCAACCCTGTC...CTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAAATTCTCTTGTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | AACTGTGAAGAGCTAAACTTCAGCATCCCTATCACAATTTTTAAGAGTGCTCTTGCAGTCCTGTCAAGATaGAGGGAGGCAACCCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NCEELNFSIPITIFKSALAVLSR*REATQS Trigger: GCTCTGGGTTGCCTCCCTTCATCTTGACAGGACTGC...AAGAGCACTCTTAAAAATTGTGATAGGGATGCTGAAGTTTAGCTCTTCACAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCTCACTCGGGCATCAGTaGGTACTGTGGAATAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: TLAMKWDTCKNKRISGAFSLGHQ*VLWNSA Trigger: TGCGCTATTCCACAGTACTCACTGATGCCCGAGTGA...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | GACGTTCTGTCTAGACTGATGTTTTTCTTTGTGAGGGTTGCAGGAACATTTTCATCACTCGGGCATCAGTaGGTACTGTGGAATAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: DVLSRLMFFFVRVAGTFSSLGHQ*VLWNSA Trigger: TGCGCTATTCCACAGTACTCACTGATGCCCGAGTGA...TGAAAATGTTCCTGCAACCCTCACAAAGAAAAACATCAGTCTAGACAGAACGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | AAGAACAAGAGAATTTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGGAACAAAGAGATAGATaGGTGACAAGAGTGTGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KNKRISGAFWLPAFLQVQEQRDR*VTRVCV Trigger: TACACACACTCTTGTCACTCATCTATCTCTTTGTTC...CTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAAATTCTCTTGTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCAGCGATCAAAGCTCATaGCCAGCAGAATCCCAGACT | + |
|
Preference number: 4 (lower is better) Translates to: TLAMKWDTCKNKRISGAFSDQSS*PAESQT Trigger: AGTCTGGGATTCTGCTGGCCATGAGCTTTGATCGCT...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | TCTGTTGACTCACACCCCATTCTTAGAAAAATATCAAGTCCAATTTGTGATGCCCATAAGAAAGGAAAATaGGTGCAGAATCCAGCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: SVDSHPILRKISSPICDAHKKGK*VQNPAQ Trigger: TTGGGCTGGATTCTGCACTCATTTTCCTTTCTTATG...GGCATCACAAATTGGACTTGATATTTTTCTAAGAATGGGGTGTGAGTCAACAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | GACGTTCTGTCTAGACTGATGTTTTTCTTTGTGAGGGTTGCAGGAACATTTTCAGCACTGAGCGAAGTATaGGAACATAAGAAAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: DVLSRLMFFFVRVAGTFSALSEV*EHKKGK Trigger: TTTTCCTTTCTTATGTTCTCATACTTCGCTCAGTGC...TGAAAATGTTCCTGCAACCCTCACAAAGAAAAACATCAGTCTAGACAGAACGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR TCA 90 bp | AACTGTGAAGAGCTAAACTTCAGCATCCCTATCACAATTTTTAAGAGTGCTCTTGCACTGAGCGAAGTATaGGAACATAAGAAAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: NCEELNFSIPITIFKSALALSEV*EHKKGK Trigger: TTTTCCTTTCTTATGTTCTCATACTTCGCTCAGTGC...AAGAGCACTCTTAAAAATTGTGATAGGGATGCTGAAGTTTAGCTCTTCACAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR GCA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCGTAATGGGAAAATCATaGAGAAACTTCGAAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: TLAMKWDTCKNKRISGAFVMGKS*RNFEGK Trigger: TTTTCCTTCGAAGTTTCTGCATGATTTTCCCATTAC...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR GCA 90 bp | TCTGTTGACTCACACCCCATTCTTAGAAAAATATCAAGTCCAATTTGTGATGCCGTAATGGGAAAATCATaGAGAAACTTCGAAGGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SVDSHPILRKISSPICDAVMGKS*RNFEGK Trigger: TTTTCCTTCGAAGTTTCTGCATGATTTTCCCATTAC...GGCATCACAAATTGGACTTGATATTTTTCTAAGAATGGGGTGTGAGTCAACAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CAA 90 bp | TTCAGGAGCTTTCTGGCTACCAGCCTTCCTCCAGGTGCAGTGAAAGAACATATCGAGAGCACATTAGCCTaGCAGAAGGGCAACCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: FRSFLATSLPPGAVKEHIESTLA*QKGNLF Trigger: GAAGAGGTTGCCCTTCTGCAAGGCTAATGTGCTCTC...GATATGTTCTTTCACTGCACCTGGAGGAAGGCTGGTAGCCAGAAAGCTCCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS-3UTR CAA 90 bp | ACCCTAGCAATGAAGTGGGATACTTGTAAGAACAAGAGAATTTCAGGAGCTTTCGAGAGCACATTAGCCTaGCAGAAGGGCAACCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: TLAMKWDTCKNKRISGAFESTLA*QKGNLF Trigger: GAAGAGGTTGCCCTTCTGCAAGGCTAATGTGCTCTC...GAAAGCTCCTGAAATTCTCTTGTTCTTACAAGTATCCCACTTCATTGCTAGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS TCA 90 bp | ATTCAGTGTTTTCATCCTTTCTTCCCGGGAGGCAATAGCAAGCACTaGGCGAAGTATGAGAACATAAGAAAGGAAAATGAGTGCAGAATC | + |
|
Preference number: 5 (lower is better) Translates to: IQCFHPFFPGGNSKH*AKYENIRKENECRI Trigger: GATTCTGCACTCATTTTCCTTTCTTATGTTCTCATACTTCGCTCAGTGCTTGCTATTGCCTCCCGGGAAGAAAGGATGAAAACACTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077417.3 ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS TCA 72 bp | TTTCATCCTTTCTTCCCGGGAGGCAATAGCAAGCACTaGGCGAAGTATGAGAACATAAGAAAGGAAAATGAG | + |
|
Preference number: 6 (lower is better) Translates to: FHPFFPGGNSKH*AKYENIRKENE Trigger: CTCATTTTCCTTTCTTATGTTCTCATACTTCGCTCAGTGCTTGCTATTGCCTCCCGGGAAGAAAGGATGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077417.3 ENSMUST00000213184.2 ENSMUST00000213991.2 |
||
| CDS GCA 72 bp | GCAACCTCTTCAGAAGGAAAGGTAATGGGAAAATCATaGAGAAACTTCGAAGGAAAACACATACACCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: ATSSEGKVMGKS*RNFEGKHIHPS Trigger: GGATGGGTGTATGTGTTTTCCTTCGAAGTTTCTGCATGATTTTCCCATTACCTTTCCTTCTGAAGAGGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077417.3 ENSMUST00000213184.2 ENSMUST00000213991.2 |
||