RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR640 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066262

Ensembl transcript IDs: ENSMUST00000084799.2, ENSMUST00000218535.2

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAAGACTGTGAGGGAAGGGAGGCATGTATCATGGGCCAGCCAGTGTaGGGTGGCTGGAAGATGCTCATTAAACTTTCATCTGAAGCTAAG +
Preference number: 1 (lower is better)
Translates to: QDCEGREACIMGQPV*GGWKMLIKLSSEAK
Trigger: CTTAGCTTCAGATGAAAGTTTAATGAGCATCTTCCAGCCACCTCACACTGGCTGGCCCATGATACATGCCTCCCTTCCCTCACAGTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 90 bp CTTTGGACCATGTTCTCCACCCTTCTCCAAAGGAAGCCTCCACATTaGACAAAAGAAATTATGCCTTTTCCCACATACTCTAGGGCACTG +
Preference number: 1 (lower is better)
Translates to: LWTMFSTLLQRKPPH*TKEIMPFPTYSRAL
Trigger: CAGTGCCCTAGAGTATGTGGGAAAAGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTTTGGAGAAGGGTGGAGAACATGGTCCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 90 bp ATGGCATGGCCCACAAACTTCCAGGTGTGGTTCATGATGCTGGTATaGGAGTCACAAACTGAAAACTGTGTTTCCAAACACTTAGTGCTA +
Preference number: 1 (lower is better)
Translates to: MAWPTNFQVWFMMLV*ESQTENCVSKHLVL
Trigger: TAGCACTAAGTGTTTGGAAACACAGTTTTCAGTTTGTGACTCTCATACCAGCATCATGAACCACACCTGGAAGTTTGTGGGCCATGCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 90 bp ATGTGTGCCCACATGTGTGTGTGTATGCATGTGCACATGTTTGTGTaGTATATGAAAGCAAAAGAGGGTTATTTGGAGAAAGAAAGAAAC +
Preference number: 1 (lower is better)
Translates to: MCAHMCVCMHVHMFV*YMKAKEGYLEKERN
Trigger: GTTTCTTTCTTTCTCCAAATAACCCTCTTTTGCTTTCATATATCACACAAACATGTGCACATGCATACACACACACATGTGGGCACACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR GCA 90 bp GTTAACAGTATCAGAATAAGTGAGGGAAATTATTCAAACACAAACTaGTATGTCCACTCTCCAGAATCTCTGTTTCTTAGACTTAGAGAA +
Preference number: 1 (lower is better)
Translates to: VNSIRISEGNYSNTN*YVHSPESLFLRLRE
Trigger: TTCTCTAAGTCTAAGAAACAGAGATTCTGGAGAGTGGACATAGCAGTTTGTGTTTGAATAATTTCCCTCACTTATTCTGATACTGTTAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR GCA 90 bp TTCATGCATATTGCAGCAATAGTAACAGAGCTAAGGTGTAGAACTTaGCTACACACCCATCAACAGATAAATGGAAAAGAAAACATATTA +
Preference number: 1 (lower is better)
Translates to: FMHIAAIVTELRCRT*LHTHQQINGKENIL
Trigger: TAATATGTTTTCTTTTCCATTTATCTGTTGATGGGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGCTGCAATATGCATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR CCA 90 bp TGCTATTGTCCTATCACTCTTACCTTACACACAACACTTAGTACCTaGAAAGTTTTCAGATACCCACTAAACTTTGTAAGCTATAATCAT +
Preference number: 1 (lower is better)
Translates to: CYCPITLTLHTTLST*KVFRYPLNFVSYNH
Trigger: ATGATTATAGCTTACAAAGTTTAGTGGGTATCTGAAAACTTTCCAGGTACTAAGTGTTGTGTGTAAGGTAAGAGTGATAGGACAATAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp ACTGCTATGTCCACTCTCCAGAATCTCTGTTTCTTAGACTTAGAGAAGAGTCCCTCCAGGTGTGGTTCATaGTGCTGGTATGAGAGTCAC +
Preference number: 2 (lower is better)
Translates to: TAMSTLQNLCFLDLEKSPSRCGS*CWYESH
Trigger: GTGACTCTCATACCAGCATCATGAACCACACCTGGA...GGGACTCTTCTCTAAGTCTAAGAAACAGAGATTCTGGAGAGTGGACATAGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp ACTGCTATGTCCACTCTCCAGAATCTCTGTTTCTTAGACTTAGAGAAGAGTCCCTTCTCCCTTTCATCCTaGAGGAAACACTCTACCAAA +
Preference number: 2 (lower is better)
Translates to: TAMSTLQNLCFLDLEKSPFSLSS*RKHSTK
Trigger: TTTGGTAGAGTGTTTCCTTCAGGATGAAAGGGAGAA...GGGACTCTTCTCTAAGTCTAAGAAACAGAGATTCTGGAGAGTGGACATAGCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR GCA 90 bp ATGCATATTGCAGCAATAGTAACAGAGCTAAGGTGTAGAACTTGCCTACACACCGTGTTCAAGCCACTTTaGCTGCAGGACTCTGTTATT +
Preference number: 2 (lower is better)
Translates to: MHIAAIVTELRCRTCLHTVFKPL*LQDSVI
Trigger: AATAACAGAGTCCTGCAGGCAAAGTGGCTTGAACAC...GGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGCTGCAATATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp ATGCATATTGCAGCAATAGTAACAGAGCTAAGGTGTAGAACTTGCCTACACACCTCTCATTTGGTAAGATaGATATGGAGCCAAATTGTG +
Preference number: 2 (lower is better)
Translates to: MHIAAIVTELRCRTCLHTSHLVR*IWSQIV
Trigger: CACAATTTGGCTCCATATTCATCTTACCAAATGAGA...GGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGCTGCAATATGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp GCTAAGATGATGTCTAACCTCCATCACTTCATAAGGATAGGAATGCAATCCATCTTCATGATGCTGGTATaGGAGTCACAAACTGAAAAC +
Preference number: 2 (lower is better)
Translates to: AKMMSNLHHFIRIGMQSIFMMLV*ESQTEN
Trigger: GTTTTCAGTTTGTGACTCTCATACCAGCATCATGAA...GATGGATTGCATTCCTATCCTTATGAAGTGATGGAGGTTAGACATCATCTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp GCTAAGATGATGTCTAACCTCCATCACTTCATAAGGATAGGAATGCAATCCATCAGGAAGCCTCCACATTaGACAAAAGAAATTATGCCT +
Preference number: 2 (lower is better)
Translates to: AKMMSNLHHFIRIGMQSIRKPPH*TKEIMP
Trigger: AGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCT...GATGGATTGCATTCCTATCCTTATGAAGTGATGGAGGTTAGACATCATCTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR CCA 90 bp CCAAAGGAAGCCTCCACATTGAACAAAAGAAATTATGCCTTTTCCCACATACTCGACTCTCACAGTCATTaGCCAATAACTAAGTTTACC +
Preference number: 2 (lower is better)
Translates to: PKEASTLNKRNYAFSHILDSHSH*PITKFT
Trigger: GGTAAACTTAGTTATTGGCCAATGACTGTGAGAGTC...GAGTATGTGGGAAAAGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCATGAGAGTCACAAACTaGAAACTGTGTTTCCAAACA +
Preference number: 2 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLMRVTN*KLCFQT
Trigger: TGTTTGGAAACACAGTTTTCAGTTTGTGACTCTCAT...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR TCA 90 bp AATATGGTCTGTTATGCAACTTTACATATGGGTGAGTGTGCATATGTGCATTGTGTGCACATGTTTGTGTaGTATATGAAAGCAAAAGAG +
Preference number: 2 (lower is better)
Translates to: NMVCYATLHMGECAYVHCVHMFV*YMKAKE
Trigger: CTCTTTTGCTTTCATATATCACACAAACATGTGCAC...ACAATGCACATATGCACACTCACCCATATGTAAAGTTGCATAACAGACCATATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR CCA 72 bp GTGATCAAGACTGTGAGGGAAGGGAGGCATGTATCATaGGCCAGCCAGTGTGAGGTGGCTGGAAGATGCTCA +
Preference number: 3 (lower is better)
Translates to: VIKTVREGRHVS*ASQCEVAGRCS
Trigger: TGAGCATCTTCCAGCCACCTCACACTGGCTGGCCCATGATACATGCCTCCCTTCCCTCACAGTCTTGATCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp GAGGGAAGGGAGGCATGTATCATGGGCCAGCCAGTGTaGGGTGGCTGGAAGATGCTCATTAAACTTTCATCT +
Preference number: 3 (lower is better)
Translates to: EGREACIMGQPV*GGWKMLIKLSS
Trigger: AGATGAAAGTTTAATGAGCATCTTCCAGCCACCTCACACTGGCTGGCCCATGATACATGCCTCCCTTCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR CCA 72 bp CAGAATCTCTGTTTCTTAGACTTAGAGAAGAGTCCCTaGACATGGCATGGCCCACAAACTTCCAGGTGTGGT +
Preference number: 3 (lower is better)
Translates to: QNLCFLDLEKSP*TWHGPQTSRCG
Trigger: ACCACACCTGGAAGTTTGTGGGCCATGCCATGTCCAGGGACTCTTCTCTAAGTCTAAGAAACAGAGATTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp ACATGGCATGGCCCACAAACTTCCAGGTGTGGTTCATaGTGCTGGTATGAGAGTCACAAACTGAAAACTGTG +
Preference number: 3 (lower is better)
Translates to: TWHGPQTSRCGS*CWYESHKLKTV
Trigger: CACAGTTTTCAGTTTGTGACTCTCATACCAGCATCATGAACCACACCTGGAAGTTTGTGGGCCATGCCATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp TGGGAAGACCTAAATGTTCCCTTCTCCCTTTCATCCTaGAGGAAACACTCTACCAAACCTGTCTGTCAGTTT +
Preference number: 3 (lower is better)
Translates to: WEDLNVPFSLSS*RKHSTKPVCQF
Trigger: AAACTGACAGACAGGTTTGGTAGAGTGTTTCCTTCAGGATGAAAGGGAGAAGGGAACATTTAGGTCTTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp CCCACAAACTTCCAGGTGTGGTTCATGATGCTGGTATaGGAGTCACAAACTGAAAACTGTGTTTCCAAACAC +
Preference number: 3 (lower is better)
Translates to: PTNFQVWFMMLV*ESQTENCVSKH
Trigger: GTGTTTGGAAACACAGTTTTCAGTTTGTGACTCTCATACCAGCATCATGAACCACACCTGGAAGTTTGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp TTTGCTTTTGTCACCACAGATTCCACACTCCTGAGATaGACTCAGTCTCCCCCATCTTTAATAACCATCCAC +
Preference number: 3 (lower is better)
Translates to: FAFVTTDSTLLR*TQSPPSLITIH
Trigger: GTGGATGGTTATTAAAGATGGGGGAGACTGAGTTCATCTCAGGAGTGTGGAATCTGTGGTGACAAAAGCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR CAA 90 bp CCAAAGGAAGCCTCCACATTGAACAAAAGAAATTATGCCTTTTCCCACATACTCTGTGTTCAAGCCACTTaGCCTGCAGGACTCTGTTAT +
Preference number: 3 (lower is better)
Translates to: PKEASTLNKRNYAFSHILCVQAT*PAGLCY
Trigger: ATAACAGAGTCCTGCAGGCAAAGTGGCTTGAACACA...GAGTATGTGGGAAAAGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR CAA 90 bp GCTAAGATGATGTCTAACCTCCATCACTTCATAAGGATAGGAATGCAATCCATCCCAAAATCACAGCTATaGAAAGCTTCAGGCCTCTAC +
Preference number: 3 (lower is better)
Translates to: AKMMSNLHHFIRIGMQSIPKSQL*KASGLY
Trigger: GTAGAGGCCTGAAGCTTTCAATAGCTGTGATTTTGG...GATGGATTGCATTCCTATCCTTATGAAGTGATGGAGGTTAGACATCATCTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp GGTGTGGTTCATGATGCTGGTATGAGAGTCACAAACTaGAAACTGTGTTTCCAAACACTTAGTGCTATTGTC +
Preference number: 3 (lower is better)
Translates to: GVVHDAGMRVTN*KLCFQTLSAIV
Trigger: GACAATAGCACTAAGTGTTTGGAAACACAGTTTTCAGTTTGTGACTCTCATACCAGCATCATGAACCACACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR-3UTR CAA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCAAGGAAGCCTCCACATaGAACAAAAGAAATTATGCC +
Preference number: 3 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLKEAST*NKRNYA
Trigger: GGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTT...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR GCA 72 bp ATTGCAGCAATAGTAACAGAGCTAAGGTGTAGAACTTaGCTACACACCCATCAACAGATAAATGGAAAAGAA +
Preference number: 3 (lower is better)
Translates to: IAAIVTELRCRT*LHTHQQINGKE
Trigger: TTCTTTTCCATTTATCTGTTGATGGGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGCTGCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR GCA 72 bp ATGTTTCTGGTAAATGACAATCCATGGGAAGATGCTTaGACATTCATGCATATTGCAGCAATAGTAACAGAG +
Preference number: 3 (lower is better)
Translates to: MFLVNDNPWEDA*TFMHIAAIVTE
Trigger: CTCTGTTACTATTGCTGCAATATGCATGAATGTGCAAGCATCTTCCCATGGATTGTCATTTACCAGAAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR GCA 72 bp ATCAGAATAAGTGAGGGAAATTATTCAAACACAAACTaGTATGTCCACTCTCCAGAATCTCTGTTTCTTAGA +
Preference number: 3 (lower is better)
Translates to: IRISEGNYSNTN*YVHSPESLFLR
Trigger: TCTAAGAAACAGAGATTCTGGAGAGTGGACATAGCAGTTTGTGTTTGAATAATTTCCCTCACTTATTCTGAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR TCA 72 bp TCCAATAAAGTCACAAAATTCCAAAATCACAGCTATTaGAAGCTTCAGGCCTCTACTTTGTTTCAGCAATAT +
Preference number: 3 (lower is better)
Translates to: SNKVTKFQNHSY*KLQASTLFQQY
Trigger: ATATTGCTGAAACAAAGTAGAGGCCTGAAGCTTTCAATAGCTGTGATTTTGGAATTTTGTGACTTTATTGGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp AACAGTGATCAAGACTGTGAGGGAAGGGAGGCATGTATCATGGGCCAGCCAGTGTATACAGGTGTTGAGTaGCTTGAGTCGCTGTTCGTG +
Preference number: 4 (lower is better)
Translates to: NSDQDCEGREACIMGQPVYTGVE*LESLFV
Trigger: CACGAACAGCGACTCAAGGCACTCAACACCTGTATA...CACTGGCTGGCCCATGATACATGCCTCCCTTCCCTCACAGTCTTGATCACTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR TCA 90 bp AATCTCTGTTTCTTAGACTTAGAGAAGAGTCCCTGGACATGGCATGGCCCACAACCAGAGCAAGGATACTaGGGTTGCCTGCAATGGAGA +
Preference number: 4 (lower is better)
Translates to: NLCFLDLEKSPWTWHGPQPEQGY*GCLQWR
Trigger: TCTCCATTGCAGGCAACCTCAGTATCCTTGCTCTGG...TTGTGGGCCATGCCATGTCCAGGGACTCTTCTCTAAGTCTAAGAAACAGAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp AACAGTGATCAAGACTGTGAGGGAAGGGAGGCATGTATCATGGGCCAGCCAGTGGATACTGAGGTTGCCTaGAATGGAGATGAAATAGAG +
Preference number: 4 (lower is better)
Translates to: NSDQDCEGREACIMGQPVDTEVA*NGDEIE
Trigger: CTCTATTTCATCTCCATTGCAGGCAACCTCAGTATC...CACTGGCTGGCCCATGATACATGCCTCCCTTCCCTCACAGTCTTGATCACTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp AACAGTGATCAAGACTGTGAGGGAAGGGAGGCATGTATCATGGGCCAGCCAGTGGTAGCACATTGCCCTTaGAAAAGGGCAATCTTTTTA +
Preference number: 4 (lower is better)
Translates to: NSDQDCEGREACIMGQPVVAHCP*KRAIFL
Trigger: TAAAAAGATTGCCCTTTTGCAAGGGCAATGTGCTAC...CACTGGCTGGCCCATGATACATGCCTCCCTTCCCTCACAGTCTTGATCACTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp GCAATAGTAACAGAGCTAAGGTGTAGAACTTGCCTACACACCCATCAACAGATACTGTCAGCTGTAGTGTaGCTGGCTGGAAGGGAGTAC +
Preference number: 4 (lower is better)
Translates to: AIVTELRCRTCLHTHQQILSAVV*LAGREY
Trigger: GTACTCCCTTCCAGCCAGCCACACTACAGCTGACAG...TATCTGTTGATGGGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp AATCTCTGTTTCTTAGACTTAGAGAAGAGTCCCTGGACATGGCATGGCCCACAATGGAGGCAATATGAATaGTGTAGCACATTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: NLCFLDLEKSPWTWHGPQWRQYE*CSTLPL
Trigger: CAAGGGCAATGTGCTACACCATTCATATTGCCTCCA...TTGTGGGCCATGCCATGTCCAGGGACTCTTCTCTAAGTCTAAGAAACAGAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCTGTAGTGTGGCTGGCTaGAAGGGAGTACCATTCAAG +
Preference number: 4 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLCSVAG*KGVPFK
Trigger: CTTGAATGGTACTCCCTTCCAGCCAGCCACACTACA...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR TCA 90 bp TCCCTTCTCCCTTTCATCCTGAAGGAAACACTCTACCAAACCTGTCTGTCAGTTTGCCTGCAATGGAGATaGAATAGAGGAAACAGAAAA +
Preference number: 4 (lower is better)
Translates to: SLLPFILKETLYQTCLSVCLQWR*NRGNRK
Trigger: TTTTCTGTTTCCTCTATTTCATCTCCATTGCAGGCA...AACTGACAGACAGGTTTGGTAGAGTGTTTCCTTCAGGATGAAAGGGAGAAGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
3UTR CAA 72 bp CATGTTCTCCACCCTTCTCCAAAGGAAGCCTCCACATaGAACAAAAGAAATTATGCCTTTTCCCACATACTC +
Preference number: 4 (lower is better)
Translates to: HVLHPSPKEAST*NKRNYAFSHIL
Trigger: GAGTATGTGGGAAAAGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTTTGGAGAAGGGTGGAGAACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp AGCAATATTCTTAAATTTAGCAGGCAAGTTTTAGTCTCTTCTCTTACAGAGCTCAGGGCAATCCAAGCTTaGCCTGTGTTCATCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SNILKFSRQVLVSSLTELRAIQA*PVFIPG
Trigger: TCCTGGGATGAACACAGGCCAAGCTTGGATTGCCCT...GAGCTCTGTAAGAGAAGAGACTAAAACTTGCCTGCTAAATTTAAGAATATTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp GCTAAGATGATGTCTAACCTCCATCACTTCATAAGGATAGGAATGCAATCCATCAGAAGCGGTGGATCATaGAGACAGCAATTATGGGAA +
Preference number: 4 (lower is better)
Translates to: AKMMSNLHHFIRIGMQSIRSGGS*RQQLWE
Trigger: TTCCCATAATTGCTGTCTCCATGATCCACCGCTTCT...GATGGATTGCATTCCTATCCTTATGAAGTGATGGAGGTTAGACATCATCTTAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCCTTTTCCAGAAGCGGTaGATCATGGAGACAGCAATT +
Preference number: 4 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLLFQKR*IMETAI
Trigger: AATTGCTGTCTCCATGATCCACCGCTTCTGGAAAAG...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR TCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCTTGGACATCATAACATaGACAACAGCTGGAGCACTT +
Preference number: 4 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLLDIIT*TTAGAL
Trigger: AAGTGCTCCAGCTGTTGTTCATGTTATGATGTCCAA...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR TCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCATTTATGGAAGACTTTaGGCATCCCTTTGCGGATCT +
Preference number: 4 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLIYGRL*ASLCGS
Trigger: AGATCCGCAAAGGGATGCTCAAAGTCTTCCATAAAT...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp ATAAGGATAGGAATGCAATCCATCTTTGCTTTTGTCACCACAGATTCCACACTCGGTAGTGAAACTTTTTaGAAGGATACCCAGACCCAT +
Preference number: 4 (lower is better)
Translates to: IRIGMQSIFAFVTTDSTLGSETF*KDTQTH
Trigger: ATGGGTCTGGGTATCCTTGCAAAAAGTTTCACTACC...GAGTGTGGAATCTGTGGTGACAAAAGCAAAGATGGATTGCATTCCTATCCTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp ATCACTCTTACCTTACACACAACACTTAGTACCTGGAAAGTTTTCAGATACCCAAATGGTGTAGCACATTaGCCTTGCAAAAGGGCAATC +
Preference number: 4 (lower is better)
Translates to: ITLTLHTTLSTWKVFRYPNGVAH*PCKRAI
Trigger: GATTGCCCTTTTGCAAGGGCAATGTGCTACACCATT...TGGGTATCTGAAAACTTTCCAGGTACTAAGTGTTGTGTGTAAGGTAAGAGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR GCA 90 bp AGCAATATTCTTAAATTTAGCAGGCAAGTTTTAGTCTCTTCTCTTACAGAGCTCATGGATGTCTCCACATaGCACTTTCATCAGATCTGG +
Preference number: 4 (lower is better)
Translates to: SNILKFSRQVLVSSLTELMDVST*HFHQIW
Trigger: CCAGATCTGATGAAAGTGGCATGTGGAGACATCCAT...GAGCTCTGTAAGAGAAGAGACTAAAACTTGCCTGCTAAATTTAAGAATATTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp ATATCAACACCAAACCTCCATAGGACTATTCTCTATTCAAATTTTCCACCTCATAACATGAACAACAGCTaGAGCACTTTTCCAGAAGCG +
Preference number: 4 (lower is better)
Translates to: ISTPNLHRTILYSNFPPHNMNNS*STFPEA
Trigger: CGCTTCTGGAAAAGTGCTCCAGCTGTTGTTCATGTT...ATGAGGTGGAAAATTTGAATAGAGAATAGTCCTATGGAGGTTTGGTGTTGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CCA 90 bp AATATGGTCTGTTATGCAACTTTACATATGGGTGAGTGTGCATATGTGCATTGTTTCATCAGATCTGGATaGAGGCAATATGAATGGTGT +
Preference number: 4 (lower is better)
Translates to: NMVCYATLHMGECAYVHCFIRSG*RQYEWC
Trigger: ACACCATTCATATTGCCTCCATCCAGATCTGATGAA...ACAATGCACATATGCACACTCACCCATATGTAAAGTTGCATAACAGACCATATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR TCA 90 bp ATATCAACACCAAACCTCCATAGGACTATTCTCTATTCAAATTTTCCACCTCATAAGAAAACGTGTGAATaGAGAACATCTGTACCAGAC +
Preference number: 4 (lower is better)
Translates to: ISTPNLHRTILYSNFPPHKKTCE*RTSVPD
Trigger: GTCTGGTACAGATGTTCTTCATTCACACGTTTTCTT...ATGAGGTGGAAAATTTGAATAGAGAATAGTCCTATGGAGGTTTGGTGTTGATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS GCA 90 bp AGAAAATCAGGGCAATCCAAGCTTGGCCTGTGTTCATCCCAGGAATaGCTGTCAGCTGTAGTGTGGCTGGCTGGAAGGGAGTACCATTCA +
Preference number: 5 (lower is better)
Translates to: RKSGQSKLGLCSSQE*LSAVVWLAGREYHS
Trigger: TGAATGGTACTCCCTTCCAGCCAGCCACACTACAGCTGACAGGCATTCCTGGGATGAACACAGGCCAAGCTTGGATTGCCCTGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2
CDS CCA 90 bp TTGTTAACATGGATGTCTCCACATGCCACTTTCATCAGATCTGGATaGAGGCAATATGAATGGTGTAGCACATTGCCCTTGCAAAAGGGC +
Preference number: 5 (lower is better)
Translates to: LLTWMSPHATFIRSG*RQYEWCSTLPLQKG
Trigger: GCCCTTTTGCAAGGGCAATGTGCTACACCATTCATATTGCCTCCATCCAGATCTGATGAAAGTGGCATGTGGAGACATCCATGTTAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2
CDS-3UTR CAA 90 bp AATATGGTCTGTTATGCAACTTTACATATGGGTGAGTGTGCATATGTGCATTGTCAGGGCAATCCAAGCTaGGCCTGTGTTCATCCCAGG +
Preference number: 5 (lower is better)
Translates to: NMVCYATLHMGECAYVHCQGNPS*ACVHPR
Trigger: CCTGGGATGAACACAGGCCAAGCTTGGATTGCCCTG...ACAATGCACATATGCACACTCACCCATATGTAAAGTTGCATAACAGACCATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CAA 90 bp GCAATAGTAACAGAGCTAAGGTGTAGAACTTGCCTACACACCCATCAACAGATAGACACTCCCAAGTCATaGAGAGAGAGCATAGAGAGG +
Preference number: 5 (lower is better)
Translates to: AIVTELRCRTCLHTHQQIDTPKS*RESIER
Trigger: CCTCTCTATGCTCTCTCTCAATGACTTGGGAGTGTC...TATCTGTTGATGGGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CAA 90 bp GCTAAGATGATGTCTAACCTCCATCACTTCATAAGGATAGGAATGCAATCCATCCAGGTGTTGAGTGCCTaGAGTCGCTGTTCGTGTGAT +
Preference number: 5 (lower is better)
Translates to: AKMMSNLHHFIRIGMQSIQVLSA*SRCSCD
Trigger: ATCACACGAACAGCGACTCAAGGCACTCAACACCTG...GATGGATTGCATTCCTATCCTTATGAAGTGATGGAGGTTAGACATCATCTTAGC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CAA 90 bp TCCAAAGGAAGCCTCCACATTGAACAAAAGAAATTATGCCTTTTCCCACATACTACTTTGAGCATCCCTTaGCGGATCTCCTTGGTCTTC +
Preference number: 5 (lower is better)
Translates to: SKGSLHIEQKKLCLFPHTTLSIP*RISLVF
Trigger: GAAGACCAAGGAGATCCGCAAAGGGATGCTCAAAGT...AGTATGTGGGAAAAGGCATAATTTCTTTTGTTCAATGTGGAGGCTTCCTTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS-3UTR CAA 90 bp ATGCATATTGCAGCAATAGTAACAGAGCTAAGGTGTAGAACTTGCCTACACACCGATTTATGGAAGACTTaGAGCATCCCTTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: MHIAAIVTELRCRTCLHTDLWKT*SIPLRI
Trigger: GATCCGCAAAGGGATGCTCAAAGTCTTCCATAAATC...GGTGTGTAGGCAAGTTCTACACCTTAGCTCTGTTACTATTGCTGCAATATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218535.2
CDS CCA 72 bp TGGATGTCTCCACATGCCACTTTCATCAGATCTGGATaGAGGCAATATGAATGGTGTAGCACATTGCCCTTG +
Preference number: 6 (lower is better)
Translates to: WMSPHATFIRSG*RQYEWCSTLPL
Trigger: CAAGGGCAATGTGCTACACCATTCATATTGCCTCCATCCAGATCTGATGAAAGTGGCATGTGGAGACATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2
CDS GCA 72 bp TTCCCGAATGACCAGAGCAAGGATACTGAGGTTGCCTaGAATGGAGATGAAATAGAGGAAACAGAAAATCAG +
Preference number: 6 (lower is better)
Translates to: FPNDQSKDTEVA*NGDEIEETENQ
Trigger: CTGATTTTCTGTTTCCTCTATTTCATCTCCATTGCAGGCAACCTCAGTATCCTTGCTCTGGTCATTCGGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2
CDS CAA 72 bp AGATCTGGATGGAGGCAATATGAATGGTGTAGCACATaGCCCTTGCAAAAGGGCAATCTTTTTACAAGAAAG +
Preference number: 6 (lower is better)
Translates to: RSGWRQYEWCST*PLQKGNLFTRK
Trigger: CTTTCTTGTAAAAAGATTGCCCTTTTGCAAGGGCAATGTGCTACACCATTCATATTGCCTCCATCCAGATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2
CDS TCA 72 bp TCTCAAGATCAGTGCATAAGACAGAAGGATAAAAACTaGGTCCACACCATATGTGAAAATTACCACAAAGAG +
Preference number: 6 (lower is better)
Translates to: SQDQCIRQKDKN*VHTICENYHKE
Trigger: CTCTTTGTGGTAATTTTCACATATGGTGTGGACTCAGTTTTTATCCTTCTGTCTTATGCACTGATCTTGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000084799.2
ENSMUST00000218535.2