Pregenerated sensors for OLFR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036647Ensembl transcript IDs: ENSMUST00000040983.6, ENSMUST00000213552.2, ENSMUST00000213651.2, ENSMUST00000219365.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACAAACTCCCCCTTCAGATAATGGAATTAGAACAAGTAGTAGTGTaGTTTAATAACAAGACTTTGGCCAAGGAATTCCTGCACTCTAGA | + |
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Preference number: 1 (lower is better) Translates to: YKLPLQIMELEQVVV*FNNKTLAKEFLHSR Trigger: TCTAGAGTGCAGGAATTCCTTGGCCAAAGTCTTGTTATTAAATCACACTACTACTTGTTCTAATTCCATTATCTGAAGGGGGAGTTTGTA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR TCA 90 bp | TATAGCACACCTGTCATTTTTAAACTCTGGGCAGATCACATTTCATaGACTTTCTCATTCAACATTCTTACTGAGTCAAACAGAACCCAT | + |
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Preference number: 1 (lower is better) Translates to: YSTPVIFKLWADHIS*TFSFNILTESNRTH Trigger: ATGGGTTCTGTTTGACTCAGTAAGAATGTTGAATGAGAAAGTTCATGAAATGTGATCTGCCCAGAGTTTAAAAATGACAGGTGTGCTATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | CAACTCCCCGGCAAGGCCGGACCTTGTTCAGCTCTAGTGCCAGCAACAGCGGGCGACTGGCTAAAGGCATaGTTGCTCACATCTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QLPGKAGPCSALVPATAGDWLKA*LLTSAS Trigger: GGAGGCAGATGTGAGCAAGCATGCCTTTAGCCAGTC...GCCCGCTGTTGCTGGCACTAGAGCTGAACAAGGTCCGGCCTTGCCGGGGAGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCGCCCCATGTACCCCATaGTCACTCAATTACACGGTA | + |
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Preference number: 2 (lower is better) Translates to: QRATELMLGDVNSAVSLPAPCTP*SLNYTV Trigger: TACCGTGTAATTGAGTGACCATGGGGTACATGGGGC...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCGACTGGCTAAAGGCATaGTTGCTCACATCTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QQQRATELMLGDVNSAVSDWLKA*LLTSAS Trigger: GGAGGCAGATGTGAGCAAGCATGCCTTTAGCCAGTC...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | CAACTCCCCGGCAAGGCCGGACCTTGTTCAGCTCTAGTGCCAGCAACAGCGGGCATTCCTAGTTCCTCTTaGTACCAAGCAAAGCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: QLPGKAGPCSALVPATAGIPSSS*YQAKPH Trigger: ATGGGGCTTTGCTTGGTAGCAAGAGGAACTAGGAAT...GCCCGCTGTTGCTGGCACTAGAGCTGAACAAGGTCCGGCCTTGCCGGGGAGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCTCTTCTCCCCTGAGATaGTCTTTGTCTCTGCAACTC | + |
|
Preference number: 2 (lower is better) Translates to: QQQRATELMLGDVNSAVSSSPLR*SLSLQL Trigger: GAGTTGCAGAGACAAAGAGCATCTCAGGGGAGAAGA...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | GCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCACCAACTCTTCTCCCCTGAGATaGTCTTTGTCTCTGCAACTC | + |
|
Preference number: 2 (lower is better) Translates to: ATELMLGDVNSAVSLPTNSSPLR*SLSLQL Trigger: GAGTTGCAGAGACAAAGAGCATCTCAGGGGAGAAGA...GTTGGTGGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCATGCTTGCTCACATCTaGCTCCATTTACCTTTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: QRATELMLGDVNSAVSLPMLAHI*LHLPFL Trigger: AAGGAAAGGTAAATGGAGGCAGATGTGAGCAAGCAT...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | GCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCACCAACATTCCTAGTTCCTCTTaGTACCAAGCAAAGCCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: ATELMLGDVNSAVSLPTNIPSSS*YQAKPH Trigger: ATGGGGCTTTGCTTGGTAGCAAGAGGAACTAGGAAT...GTTGGTGGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCTCATTCAAAATTCAGTaGCCATACCAACAGAACTCT | + |
|
Preference number: 2 (lower is better) Translates to: QRATELMLGDVNSAVSLPSFKIQ*PYQQNS Trigger: AGAGTTCTGTTGGTATGGTCACTGAATTTTGAATGA...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCGACTGGCTAAAGGCATaGTTGCTCACATCTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVDWLKA*LLTSAS Trigger: GGAGGCAGATGTGAGCAAGCATGCCTTTAGCCAGTC...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCCTCTTCCCAATGGCTTaGCCCAGTACAGGGGAAACA | + |
|
Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVLFPMA*PSTGET Trigger: TGTTTCCCCTGTACTGGGGCAAGCCATTGGGAAGAG...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | CTGCCTCCATTTACCTTTCCTTCTTCTCCCCTGAGATGCTCTTTGTCTCTGCAAGTCACAGGCCTCCTCTaGACTAATGTAATTAGACAG | + |
|
Preference number: 2 (lower is better) Translates to: LPPFTFPSSPLRCSLSLQVTGLL*TNVIRQ Trigger: CTGTCTAATTACATTAGTTCAGAGGAGGCCTGTGAC...TTGCAGAGACAAAGAGCATCTCAGGGGAGAAGAAGGAAAGGTAAATGGAGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCGTGTGTGTGTGTGTGTaGTTTCCCTCTGTCGTGAGA | + |
|
Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVVCVCV*FPSVVR Trigger: TCTCACGACAGAGGGAAATCACACACACACACACAC...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCTCTTCTCCCCTGAGATaGTCTTTGTCTCTGCAACTC | + |
|
Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVSSPLR*SLSLQL Trigger: GAGTTGCAGAGACAAAGAGCATCTCAGGGGAGAAGA...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCGTCACAGGCCTCCTCTaGACTAATGTAATTAGACAG | + |
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Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVVTGLL*TNVIRQ Trigger: CTGTCTAATTACATTAGTTCAGAGGAGGCCTGTGAC...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCCAACTTTCTACAGTCTaGCCTTCCATTATTTCACCG | + |
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Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVQLSTV*PSIISP Trigger: CGGTGAAATAATGGAAGGTCAGACTGTAGAAAGTTG...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCATGCTTGCTCACATCTaGCTCCATTTACCTTTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVMLAHI*LHLPFL Trigger: AAGGAAAGGTAAATGGAGGCAGATGTGAGCAAGCAT...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCTCATTCAAAATTCAGTaGCCATACCAACAGAACTCT | + |
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Preference number: 2 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVSFKIQ*PYQQNS Trigger: AGAGTTCTGTTGGTATGGTCACTGAATTTTGAATGA...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTATTCCTAGTTCCTCTTaGTACCAAGCAAAGCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: TFYSLTFHYFTEILCVEAIPSSS*YQAKPH Trigger: ATGGGGCTTTGCTTGGTAGCAAGAGGAACTAGGAAT...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR TCA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTTCATTCAAAATTCAGTaGCCATACCAACAGAACTCT | + |
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Preference number: 2 (lower is better) Translates to: TFYSLTFHYFTEILCVEASFKIQ*PYQQNS Trigger: AGAGTTCTGTTGGTATGGTCACTGAATTTTGAATGA...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR CAA 90 bp | CAACTCCCCGGCAAGGCCGGACCTTGTTCAGCTCTAGTGCCAGCAACAGCGGGCCAAAGAAACCTCTCTTaGTGTACTTCTGATGAATCA | + |
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Preference number: 3 (lower is better) Translates to: QLPGKAGPCSALVPATAGQRNLS*CTSDES Trigger: TGATTCATCAGAAGTACACAAAGAGAGGTTTCTTTG...GCCCGCTGTTGCTGGCACTAGAGCTGAACAAGGTCCGGCCTTGCCGGGGAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR GCA 72 bp | TTTGTTAAGACCAAGAGACCTCTCTTCCCAATGGCTTaGCCCAGTACAGGGGAAACACCAGGGCCACGAAGT | + |
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Preference number: 3 (lower is better) Translates to: FVKTKRPLFPMA*PSTGETPGPRS Trigger: ACTTCGTGGCCCTGGTGTTTCCCCTGTACTGGGGCAAGCCATTGGGAAGAGAGGTCTCTTGGTCTTAACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR CCA 72 bp | CTATGTTTGTTAAGACCAAGAGACCTCTCTTCCCAATaGCTTGCCCCAGTACAGGGGAAACACCAGGGCCAC | + |
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Preference number: 3 (lower is better) Translates to: LCLLRPRDLSSQ*LAPVQGKHQGH Trigger: GTGGCCCTGGTGTTTCCCCTGTACTGGGGCAAGCCATTGGGAAGAGAGGTCTCTTGGTCTTAACAAACATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR CCA 72 bp | ACTTTGGCCAAGGAATTCCTGCACTCTAGAGGCAGATaGAGCTCTGATTTAAGAGGCCAGCTGGTCCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: TLAKEFLHSRGR*SSDLRGQLVQV Trigger: GACCTGGACCAGCTGGCCTCTTAAATCAGAGCTCCATCTGCCTCTAGAGTGCAGGAATTCCTTGGCCAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR TCA 72 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTaGTTTCCCTCTGTCGTGAGAAGGCAATACAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: CVCVCVCVCVCV*FPSVVRRQYKH Trigger: GTGCTTGTATTGCCTTCTCACGACAGAGGGAAATCACACACACACACACACACACACACACACACACACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCCAAAGAAACCTCTCTTaGTGTACTTCTGATGAATCA | + |
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Preference number: 3 (lower is better) Translates to: FVSATLSSTSLFSVQSQAQRNLS*CTSDES Trigger: TGATTCATCAGAAGTACACAAAGAGAGGTTTCTTTG...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR CCA 72 bp | TTCCTCTTGCTACCAAGCAAAGCCCCATGTACCCCATaGTCACTCAATTACACGGTAGAATTCAAACTCTTA | + |
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Preference number: 3 (lower is better) Translates to: FLLLPSKAPCTP*SLNYTVEFKLL Trigger: TAAGAGTTTGAATTCTACCGTGTAATTGAGTGACCATGGGGTACATGGGGCTTTGCTTGGTAGCAAGAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR TCA 72 bp | CTTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATaGGCAAAAGTGCTTAGTCTTTTGTCAATGCCAATG | + |
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Preference number: 3 (lower is better) Translates to: LGKFLTFRTGCA*AKVLSLLSMPM Trigger: CATTGGCATTGACAAAAGACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR CAA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCCCGAAATTTTATGTGTaGAAGCTCCAACACAATGAG | + |
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Preference number: 3 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVPKFYV*KLQHNE Trigger: CTCATTGTGTTGGAGCTTCAACACATAAAATTTCGG...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR TCA 72 bp | CCCCTTCAGATAATGGAATTAGAACAAGTAGTAGTGTaGTTTAATAACAAGACTTTGGCCAAGGAATTCCTG | + |
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Preference number: 3 (lower is better) Translates to: PLQIMELEQVVV*FNNKTLAKEFL Trigger: CAGGAATTCCTTGGCCAAAGTCTTGTTATTAAATCACACTACTACTTGTTCTAATTCCATTATCTGAAGGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTCAAAGAAACCTCTCTTaGTGTACTTCTGATGAATCA | + |
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Preference number: 3 (lower is better) Translates to: TFYSLTFHYFTEILCVEAQRNLS*CTSDES Trigger: TGATTCATCAGAAGTACACAAAGAGAGGTTTCTTTG...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR TCA 72 bp | CCTGTCATTTTTAAACTCTGGGCAGATCACATTTCATaGACTTTCTCATTCAACATTCTTACTGAGTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: PVIFKLWADHIS*TFSFNILTESN Trigger: GTTTGACTCAGTAAGAATGTTGAATGAGAAAGTTCATGAAATGTGATCTGCCCAGAGTTTAAAAATGACAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAACTCCCCGGCAAGGCCGGACCTTGTTCAGCTCTAGTGCCAGCAACAGCGGGCATCCTGTGGTCATCATaGCTGGATAGCGAAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QLPGKAGPCSALVPATAGILWSS*LDSEEA Trigger: GGCCTCTTCGCTATCCAGTCATGATGACCACAGGAT...GCCCGCTGTTGCTGGCACTAGAGCTGAACAAGGTCCGGCCTTGCCGGGGAGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCTTGCCATGGAGATGGTaGAGCCACTCACCCAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: QRATELMLGDVNSAVSLPLPWRW*SHSPKN Trigger: GTTCTTGGGTGAGTGGCTTCACCATCTCCATGGCAA...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCATCCTGTGGTCATCATaGCTGGATAGCGAAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QQQRATELMLGDVNSAVSILWSS*LDSEEA Trigger: GGCCTCTTCGCTATCCAGTCATGATGACCACAGGAT...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCCACTCACCCAAGAACTaGTGGTCAGTTGAACACAAA | + |
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Preference number: 4 (lower is better) Translates to: QRATELMLGDVNSAVSLPHSPKN*WSVEHK Trigger: TTTGTGTTCAACTGACCATCAGTTCTTGGGTGAGTG...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAACTCCCCGGCAAGGCCGGACCTTGTTCAGCTCTAGTGCCAGCAACAGCGGGCGGAAAGAACAGTGGCTaGGAGTGGGAATATAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: QLPGKAGPCSALVPATAGGKNSG*EWEYKD Trigger: ATCCTTATATTCCCACTCTCAGCCACTGTTCTTTCC...GCCCGCTGTTGCTGGCACTAGAGCTGAACAAGGTCCGGCCTTGCCGGGGAGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCGGAAAGAACAGTGGCTaGGAGTGGGAATATAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: QRATELMLGDVNSAVSLPGKNSG*EWEYKD Trigger: ATCCTTATATTCCCACTCTCAGCCACTGTTCTTTCC...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR GCA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCGGTTCAAGACATTATTaGCACAGAAGGCAACTCGTG | + |
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Preference number: 4 (lower is better) Translates to: QRATELMLGDVNSAVSLPGSRHY*HRRQLV Trigger: CACGAGTTGCCTTCTGTGGCAATAATGTCTTGAACC...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| 3UTR CAA 72 bp | AATCAGCCAACTCTTCGAGCTCCTGCTTCTCTCAACTaGCCAACTCCCCGGCAAGGCCGGACCTTGTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: NQPTLRAPASLN*PTPRQGRTLFS Trigger: GCTGAACAAGGTCCGGCCTTGCCGGGGAGTTGGCAAGTTGAGAGAAGCAGGAGCTCGAAGAGTTGGCTGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCGAACTGATGGTCAGTTaGACACAAAATCCTGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: QQQRATELMLGDVNSAVSELMVS*TQNPVV Trigger: GACCACAGGATTTTGTGTTCAACTGACCATCAGTTC...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCACTCACCCAAGAACTaGTGGTCAGTTGAACACAAA | + |
|
Preference number: 4 (lower is better) Translates to: QQQRATELMLGDVNSAVSHSPKN*WSVEHK Trigger: TTTGTGTTCAACTGACCATCAGTTCTTGGGTGAGTG...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR GCA 90 bp | GCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCACCAACGGTTCAAGACATTATTaGCACAGAAGGCAACTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: ATELMLGDVNSAVSLPTNGSRHY*HRRQLV Trigger: CACGAGTTGCCTTCTGTGGCAATAATGTCTTGAACC...GTTGGTGGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCTTGCCATGGAGATGGTaGAGCCACTCACCCAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQALPWRW*SHSPKN Trigger: GTTCTTGGGTGAGTGGCTTCACCATCTCCATGGCAA...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCCAGAATTTGCAGCCATaGAGCAGTAGGGAAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQAQNLQP*SSREAH Trigger: ATGGGCTTCCCTACTGCTCCATGGCTGCAAATTCTG...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCGAAATGGTATTGGGGTaGAATAGGAATCCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQAEMVLG*NRNPAS Trigger: GCTGGCTGGATTCCTATTTCACCCCAATACCATTTC...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CCA 90 bp | CTGCCTCCATTTACCTTTCCTTCTTCTCCCCTGAGATGCTCTTTGTCTCTGCAACAGAATTTGCAGCCATaGAGCAGTAGGGAAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LPPFTFPSSPLRCSLSLQQNLQP*SSREAH Trigger: ATGGGCTTCCCTACTGCTCCATGGCTGCAAATTCTG...TTGCAGAGACAAAGAGCATCTCAGGGGAGAAGAAGGAAAGGTAAATGGAGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | CTGCCTCCATTTACCTTTCCTTCTTCTCCCCTGAGATGCTCTTTGTCTCTGCAAGAAATGGTATTGGGGTaGAATAGGAATCCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LPPFTFPSSPLRCSLSLQEMVLG*NRNPAS Trigger: GCTGGCTGGATTCCTATTTCACCCCAATACCATTTC...TTGCAGAGACAAAGAGCATCTCAGGGGAGAAGAAGGAAAGGTAAATGGAGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCCACTCACCCAAGAACTaGTGGTCAGTTGAACACAAA | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQAHSPKN*WSVEHK Trigger: TTTGTGTTCAACTGACCATCAGTTCTTGGGTGAGTG...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCGGAAAGAACAGTGGCTaGGAGTGGGAATATAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQAGKNSG*EWEYKD Trigger: ATCCTTATATTCCCACTCTCAGCCACTGTTCTTTCC...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR GCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCGAGAAAAGCAGAATTTaGAGCCATGGAGCAGTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVEKSRI*SHGAVG Trigger: CCCTACTGCTCCATGGCTGCAAATTCTGCTTTTCTC...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CCA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCATCCCAAGAAAGAAATaGTATTGGGGTGAAATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: FVSATLSSTSLFSVQSQAIPRKK*YWGEIG Trigger: TCCTATTTCACCCCAATACCATTTCTTTCTTGGGAT...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CCA 90 bp | CTGCCTCCATTTACCTTTCCTTCTTCTCCCCTGAGATGCTCTTTGTCTCTGCAAATCCCAAGAAAGAAATaGTATTGGGGTGAAATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LPPFTFPSSPLRCSLSLQIPRKK*YWGEIG Trigger: TCCTATTTCACCCCAATACCATTTCTTTCTTGGGAT...TTGCAGAGACAAAGAGCATCTCAGGGGAGAAGAAGGAAAGGTAAATGGAGGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR TCA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTTTGCCATGGAGATGGTaGAGCCACTCACCCAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: TFYSLTFHYFTEILCVEALPWRW*SHSPKN Trigger: GTTCTTGGGTGAGTGGCTTCACCATCTCCATGGCAA...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CCA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCATCCCAAGAAAGAAATaGTATTGGGGTGAAATAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVIPRKK*YWGEIG Trigger: TCCTATTTCACCCCAATACCATTTCTTTCTTGGGAT...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR GCA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTGAGAAAAGCAGAATTTaGAGCCATGGAGCAGTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TFYSLTFHYFTEILCVEAEKSRI*SHGAVG Trigger: CCCTACTGCTCCATGGCTGCAAATTCTGCTTTTCTC...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR GCA 90 bp | ACTTTCTACAGTCTGACCTTCCATTATTTCACCGAAATTTTATGTGTTGAAGCTGGTTCAAGACATTATTaGCACAGAAGGCAACTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: TFYSLTFHYFTEILCVEAGSRHY*HRRQLV Trigger: CACGAGTTGCCTTCTGTGGCAATAATGTCTTGAACC...AGCTTCAACACATAAAATTTCGGTGAAATAATGGAAGGTCAGACTGTAGAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCGGAGAAAAGCAGAATTaGCAGCCATGGAGCAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: QRATELMLGDVNSAVSLPGEKQN*QPWSSR Trigger: CCTACTGCTCCATGGCTGCAAATTCTGCTTTTCTCC...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | CAGCAACAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCGGAGAAAAGCAGAATTaGCAGCCATGGAGCAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: QQQRATELMLGDVNSAVSGEKQN*QPWSSR Trigger: CCTACTGCTCCATGGCTGCAAATTCTGCTTTTCTCC...GGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTGTTGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | CAGCGGGCCACAGAGCTTATGCTGGGTGATGTCAACTCGGCGGTCTCCCTGCCCAGAACTGATGGTCAGTaGAACACAAAATCCTGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: QRATELMLGDVNSAVSLPRTDGQ*NTKSCG Trigger: ACCACAGGATTTTGTGTTCAACTGACCATCAGTTCT...GGGCAGGGAGACCGCCGAGTTGACATCACCCAGCATAAGCTCTGTGGCCCGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCGGAGAAAAGCAGAATTaGCAGCCATGGAGCAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: FVSATLSSTSLFSVQSQAGEKQN*QPWSSR Trigger: CCTACTGCTCCATGGCTGCAAATTCTGCTTTTCTCC...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCAGAACTGATGGTCAGTaGAACACAAAATCCTGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: FVSATLSSTSLFSVQSQARTDGQ*NTKSCG Trigger: ACCACAGGATTTTGTGTTCAACTGACCATCAGTTCT...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | TTTGTCTCTGCAACTCTTAGCTCCACTTCCCTTTTCTCTGTCCAGTCACAGGCCATGGCTGAGATCAGCTaGTTAGAATTAAACGAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: FVSATLSSTSLFSVQSQAMAEIS*LELNEA Trigger: TGCTTCGTTTAATTCTAACAAGCTGATCTCAGCCAT...GGCCTGTGACTGGACAGAGAAAAGGGAAGTGGAGCTAAGAGTTGCAGAGACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS-3UTR CAA 90 bp | TTGGGAAATTCCTCACATTCAGGACAGGTTGTGCATGAGCAAAAGTGCTTAGTCATGGCTGAGATCAGCTaGTTAGAATTAAACGAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: LGNSSHSGQVVHEQKCLVMAEIS*LELNEA Trigger: TGCTTCGTTTAATTCTAACAAGCTGATCTCAGCCAT...GACTAAGCACTTTTGCTCATGCACAACCTGTCCTGAATGTGAGGAATTTCCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 |
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| CDS CAA 90 bp | TGCCATGGAGATGGTGAAGCCACTCACCCAAGAACTGATGGTCAGTaGAACACAAAATCCTGTGGTCATCATGACTGGATAGCGAAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: CHGDGEATHPRTDGQ*NTKSCGHHDWIAKR Trigger: CCTCTTCGCTATCCAGTCATGATGACCACAGGATTTTGTGTTCAACTGACCATCAGTTCTTGGGTGAGTGGCTTCACCATCTCCATGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 ENSMUST00000219365.2 |
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| CDS GCA 72 bp | AGAAATAGACTCTCCCAAGGCCGGTGCTCTACCACCTaGTATGGTTTTTCTGATGGCATCTTTGACTTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: RNRLSQGRCSTT*YGFSDGIFDFL Trigger: AAGGAAGTCAAAGATGCCATCAGAAAAACCATAGCAGGTGGTAGAGCACCGGCCTTGGGAGAGTCTATTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000040983.6 ENSMUST00000213552.2 ENSMUST00000213651.2 ENSMUST00000219365.2 |
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