Pregenerated sensors for OLFR572 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073963Ensembl transcript IDs: ENSMUST00000098214.2, ENSMUST00000214096.2, ENSMUST00000215782.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGATTCAGACTTGATTGTAGAGATGATGACACCATTTCCAAAGAGTaGAATGACATATATAGCGCCCAATGGGAATGCCATCCAGTAATA | + |
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Preference number: 5 (lower is better) Translates to: RFRLDCRDDDTISKE*NDIYSAQWECHPVI Trigger: TATTACTGGATGGCATTCCCATTGGGCGCTATATATGTCATTGCACTCTTTGGAAATGGTGTCATCATCTCTACAATCAAGTCTGAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098214.2 ENSMUST00000214096.2 ENSMUST00000215782.3 |
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| CDS TCA 72 bp | GCACAGGGAAAACCACACAGACTGCTCTTGACAAGATaGGCATCCCTATTTTACAGACCACACCATTGGTTA | + |
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Preference number: 6 (lower is better) Translates to: AQGKPHRLLLTR*ASLFYRPHHWL Trigger: TAACCAATGGTGTGGTCTGTAAAATAGGGATGCTCATCTTGTCAAGAGCAGTCTGTGTGGTTTTCCCTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098214.2 ENSMUST00000214096.2 ENSMUST00000215782.3 |
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| CDS GCA 72 bp | AAAGAGTGCAATGACATATATAGCGCCCAATGGGAATaGCATCCAGTAATACTTCTGCTCAAGTCCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: KECNDIYSAQWE*HPVILLLKSRD Trigger: ATCCCTGGACTTGAGCAGAAGTATTACTGGATGGCATTCCCATTGGGCGCTATATATGTCATTGCACTCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098214.2 ENSMUST00000214096.2 ENSMUST00000215782.3 |
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| CDS CAA 90 bp | ACTGCTCTTGACAAGATGAGCATCCCTATTTTACAGACCACACCATaGGTTAAAATGGTGCCATATCTAAGAGGGCTCCAGATTGCTATG | + |
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Preference number: 6 (lower is better) Translates to: TALDKMSIPILQTTP*VKMVPYLRGLQIAM Trigger: CATAGCAATCTGGAGCCCTCTTAGATATGGCACCATTTTAACCAATGGTGTGGTCTGTAAAATAGGGATGCTCATCTTGTCAAGAGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000098214.2 ENSMUST00000214096.2 ENSMUST00000215782.3 |
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| CDS GCA 72 bp | CTTGATTGTAGAGATGATGACACCATTTCCAAAGAGTaGAATGACATATATAGCGCCCAATGGGAATGCCAT | + |
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Preference number: 6 (lower is better) Translates to: LDCRDDDTISKE*NDIYSAQWECH Trigger: ATGGCATTCCCATTGGGCGCTATATATGTCATTGCACTCTTTGGAAATGGTGTCATCATCTCTACAATCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098214.2 ENSMUST00000214096.2 ENSMUST00000215782.3 |
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