Pregenerated sensors for OLFR561 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073966Ensembl transcript IDs: ENSMUST00000098217.3, ENSMUST00000213432.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCTCCTTCAGTTTCCATaGAGAAACGGTCTTACTTGC | + |
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Preference number: 2 (lower is better) Translates to: LFIRKPQVEMMWTTEDEALLQFP*RNGLTC Trigger: GCAAGTAAGACCGTTTCTTCATGGAAACTGAAGGAG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTGTCCATTGCCCTATGTaGCCTTTAAAAAGATGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAVHCPM*PLKRCF Trigger: GAAACATCTTTTTAAAGGTCACATAGGGCAATGGAC...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTAGCAGGCTGAGGAGCTaGGGTCTTCTGCACAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: KVYCFLECSSCTYKYPDVSRLRS*GLLHRD Trigger: ATCCCTGTGCAGAAGACCTCAGCTCCTCAGCCTGCT...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR GCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTGCATCTATGTTGGAATaGAATGCTGAGTGTCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAASMLE*NAECLD Trigger: ATCAAGACACTCAGCATTGCATTCCAACATAGATGC...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTAACCCCAGGTGGAGATaGTGTGGACCACAGAGGATG | + |
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Preference number: 2 (lower is better) Translates to: KVYCFLECSSCTYKYPDVNPRWR*CGPQRM Trigger: CATCCTCTGTGGTCCACATCATCTCCACCTGGGGTT...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR CCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCAGGATGAGGCTCCCATaGGCTCATTCTACTTTATGG | + |
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Preference number: 2 (lower is better) Translates to: IYGESYPRLSETSSSENPRMRLP*AHSTLW Trigger: CCATAAAGTAGAATGAGCCCATGGGAGCCTCATCCT...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR GCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCAGAGTCTAAAACTCTaGAGGCAGAAACTTATAAAA | + |
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Preference number: 2 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAQSLKL*RQKLIK Trigger: TTTTATAAGTTTCTGCCTGCAGAGTTTTAGACTCTG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR CCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCTAATTAAGACTGTCTaGAACAAGATGAGTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: LFIRKPQVEMMWTTEDEALIKTV*NKMSLQ Trigger: TTGAAGACTCATCTTGTTCCAGACAGTCTTAATTAG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCGCTAGGTCTTGCATTTaGCAAAGAGATCTCAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: IYGESYPRLSETSSSENPARSCI*QRDLKA Trigger: AGCTTTGAGATCTCTTTGTCAAATGCAAGACCTAGC...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCTATGACTGCATTGTGTaGTCATCAAATCAGGGGACA | + |
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Preference number: 2 (lower is better) Translates to: IYGESYPRLSETSSSENPYDCIV*SSNQGT Trigger: TGTCCCCTGATTTGATGATCACACAATGCAGTCATA...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTGGAGCTGAGGTCTTCTaGACAGGGATACAGAACATT | + |
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Preference number: 2 (lower is better) Translates to: KVYCFLECSSCTYKYPDVGAEVF*TGIQNI Trigger: AATGTTCTGTATCCCTGTGCAGAAGACCTCAGCTCC...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCCTGTCTGGAACAAGATaGGTCTTCAATATATGTACT | + |
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Preference number: 2 (lower is better) Translates to: IYGESYPRLSETSSSENPLSGTR*VFNICT Trigger: AGTACATATATTGAAGACTCATCTTGTTCCAGACAG...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR TCA 72 bp | TCTGAAACCTCTTCATCAGAAAACCCCAGGTGGAGATaGTGTGGACCACAGAGGATGAGGCTCCCATGGGCT | + |
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Preference number: 3 (lower is better) Translates to: SETSSSENPRWR*CGPQRMRLPWA Trigger: AGCCCATGGGAGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAGGTTTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR CCA 72 bp | AACCTCTTCATCAGAAAACCCCAGGTGGAGATGATGTaGACCACAGAGGATGAGGCTCCCATGGGCTCATTC | + |
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Preference number: 3 (lower is better) Translates to: NLFIRKPQVEMM*TTEDEAPMGSF Trigger: GAATGAGCCCATGGGAGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR TCA 72 bp | CCAGATGTTCTTTTGTGGCTTTCTCTCAGAGCAGGCTaGGGAGCTGAGGTCTTCTGCACAGGGATACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: PDVLLWLSLRAG*GAEVFCTGIQN Trigger: GTTCTGTATCCCTGTGCAGAAGACCTCAGCTCCTCAGCCTGCTCTGAGAGAAAGCCACAAAAGAACATCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCTGAGTGTCTTGATCTaGTGTAGATCCCATGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: LFIRKPQVEMMWTTEDEALSVLI*CRSHAR Trigger: CCTTGCATGGGATCTACACAAGATCAAGACACTCAG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTGGAAACATAGAGACTTaGAGTCCATTGCCCTATGTG | + |
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Preference number: 3 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAGNIET*SPLPYV Trigger: CACATAGGGCAATGGACTCAAAGTCTCTATGTTTCC...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR TCA 72 bp | TCTTTTGTGGCTTTCTCTCAGAGCAGGCTGAGGAGCTaGGGTCTTCTGCACAGGGATACAGAACATTTATGG | + |
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Preference number: 3 (lower is better) Translates to: SFVAFSQSRLRS*GLLHRDTEHLW Trigger: CCATAAATGTTCTGTATCCCTGTGCAGAAGACCTCAGCTCCTCAGCCTGCTCTGAGAGAAAGCCACAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCCCCTCCGCATCTATGTaGGAATGCAATGCTGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: IYGESYPRLSETSSSENPPSASM*ECNAEC Trigger: ACACTCAGCATTGCATTCCAACATAGATGCGGAGGG...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 47% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR TCA 72 bp | GACAGAACTTTAGGTTCAGTGTATGACTGCATTGTGTaGTCATCAAATCAGGGGACAATTTTCTATGAGTAC | + |
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Preference number: 3 (lower is better) Translates to: DRTLGSVYDCIV*SSNQGTIFYEY Trigger: GTACTCATAGAAAATTGTCCCCTGATTTGATGATCACACAATGCAGTCATACACTGAACCTAAAGTTCTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTAGTGAGGAAGAAGACTaGTGGGTAGGCAGTGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEASEEED*WVGSAL Trigger: GAGAGCACTGCCTACCCACCAGTCTTCTTCCTCACT...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR GCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTGACAGAGTCCAAGCCTaGAGTAGAGATGACAATGGC | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEADRVQA*SRDDNG Trigger: GCCATTGTCATCTCTACTGCAGGCTTGGACTCTGTC...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR TCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCGACCAGGAATGCCAGTaGGGAAGAAGACTGGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPDQECQ*GRRLVG Trigger: ACCCACCAGTCTTCTTCCTCACTGGCATTCCTGGTC...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR GCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCATTTGGCCAATGCATaGATCGAAGCTAATTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAHLANA*IEANFS Trigger: CGAGAAATTAGCTTCGATGCATGCATTGGCCAAATG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR TCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCAAAACCCACTGCAATaGTTCGAGAATTGGTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAQNPLQ*FENWLR Trigger: TCTTAACCAATTCTCGAATCATTGCAGTGGGTTTTG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR GCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCCCGCTCCTCCTTGGATaGAATGCAAAGGACAGAATG | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPPLLLG*NAKDRM Trigger: CATTCTGTCCTTTGCATTGCATCCAAGGAGGAGCGG...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCGACAACAGAAAGGGATaGAGATCCAGGTGTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPDNRKG*RSRCER Trigger: CCTCTCACACCTGGATCTCCATCCCTTTCTGTTGTC...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTTGGATAAAGAACATTTaGCCAATGCATGCATCGAAG | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAWIKNI*PMHASK Trigger: CTTCGATGCATGCATTGGCCAAATGTTCTTTATCCA...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTCATAGCATACCTCAGTaGGTTACAGATGGCAATAAA | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAHSIPQ*VTDGNK Trigger: TTTATTGCCATCTGTAACCCACTGAGGTATGCTATG...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTAAAATACTTTCAGCATaGCCTTGCGAATTTGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAKILSA*PCEFVW Trigger: CCAAACAAATTCGCAAGGCCATGCTGAAAGTATTTT...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTGCAACAGCACTGAGGTaGGAGACACAGGTACCAAAC | + |
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Preference number: 4 (lower is better) Translates to: KVYCFLECSSCTYKYPDVATALR*ETQVPN Trigger: GTTTGGTACCTGTGTCTCCCACCTCAGTGCTGTTGC...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR TCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCTCATTACCGGAGGAATaGGCAGATAAACATTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPSLPEE*ADKHWQ Trigger: TTGCCAATGTTTATCTGCTCATTCCTCCGGTAATGA...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR GCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCCTTTCAGCATGGCCTTaGGAATTTGTTTGGTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPLSAWP*EFVWFS Trigger: TGAAAACCAAACAAATTCGCAAGGCCATGCTGAAAG...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CCA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTTTTTCCGCTCCTCCTTaGATGCAATGCAAAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: KVYCFLECSSCTYKYPDVFSAPP*MQCKGQ Trigger: CTGTCCTTTGCATTGCATCCAAGGAGGAGCGGAAAA...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR GCA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCTCCCCTAATTATGATTaGAAAACCCACTGCAATGAT | + |
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Preference number: 4 (lower is better) Translates to: IYGESYPRLSETSSSENPSPNYD*KTHCND Trigger: ATCATTGCAGTGGGTTTTGCAATCATAATTAGGGGA...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR CAA 72 bp | TCTTGTGTAGATCCCATGCAAGGAAACATAGAGACTTaGAGTCCATTGCCCTATGTGACCTTTAAAAAGATG | + |
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Preference number: 4 (lower is better) Translates to: SCVDPMQGNIET*SPLPYVTFKKM Trigger: CATCTTTTTAAAGGTCACATAGGGCAATGGACTCAAAGTCTCTATGTTTCCTTGCATGGGATCTACACAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| 3UTR CAA 72 bp | CATCTATGTTGGAATGCAATGCTGAGTGTCTTGATCTaGTGTAGATCCCATGCAAGGAAACATAGAGACTTT | + |
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Preference number: 4 (lower is better) Translates to: HLCWNAMLSVLI*CRSHARKHRDF Trigger: AAAGTCTCTATGTTTCCTTGCATGGGATCTACACAAGATCAAGACACTCAGCATTGCATTCCAACATAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | CTCTTCATCAGAAAACCCCAGGTGGAGATGATGTGGACCACAGAGGATGAGGCTAAGCCAAAGGCACTATaGATCCTGGTATCTGAACAT | + |
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Preference number: 5 (lower is better) Translates to: LFIRKPQVEMMWTTEDEAKPKAL*ILVSEH Trigger: ATGTTCAGATACCAGGATCAATAGTGCCTTTGGCTT...AGCCTCATCCTCTGTGGTCCACATCATCTCCACCTGGGGTTTTCTGATGAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | ATTTATGGGGAGAGCTATCCTAGGCTTTCTGAAACCTCTTCATCAGAAAACCCCCAAAAAGACAGACGCTaGAGGAGCAGGAGTAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: IYGESYPRLSETSSSENPQKDRR*RSRSKG Trigger: TCCTTTACTCCTGCTCCTCAAGCGTCTGTCTTTTTG...GGGGTTTTCTGATGAAGAGGTTTCAGAAAGCCTAGGATAGCTCTCCCCATAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTTTTTTCCGCTCCTCCTaGGATGCAATGCAAAGGACA | + |
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Preference number: 5 (lower is better) Translates to: KVYCFLECSSCTYKYPDVFFRSS*DAMQRT Trigger: TGTCCTTTGCATTGCATCCAAGGAGGAGCGGAAAAA...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTACACAGTTACCAATGTaGAAAGGCATAGACCTAGGT | + |
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Preference number: 5 (lower is better) Translates to: KVYCFLECSSCTYKYPDVTQLPM*KGIDLG Trigger: ACCTAGGTCTATGCCTTTCAACATTGGTAACTGTGT...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTACTTTCAGCATGGCCTaGCGAATTTGTTTGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: KVYCFLECSSCTYKYPDVTFSMA*RICLVF Trigger: GAAAACCAAACAAATTCGCAAGGCCATGCTGAAAGT...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS-3UTR CAA 90 bp | AAAGTCTATTGCTTCCTTGAATGTAGCAGCTGTACTTACAAGTACCCAGATGTTATGGATAAAGAACATTaGGCCAATGCATGCATCGAA | + |
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Preference number: 5 (lower is better) Translates to: KVYCFLECSSCTYKYPDVMDKEH*ANACIE Trigger: TTCGATGCATGCATTGGCCAAATGTTCTTTATCCAT...AACATCTGGGTACTTGTAAGTACAGCTGCTACATTCAAGGAAGCAATAGACTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213432.2 |
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| CDS TCA 72 bp | TCCAGGTGTGAGAGGTCTCAAGACCAGGAATGCCAGTaGGGAAGAAGACTGGTGGGTAGGCAGTGCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: SRCERSQDQECQ*GRRLVGRQCSR Trigger: ACGAGAGCACTGCCTACCCACCAGTCTTCTTCCTCACTGGCATTCCTGGTCTTGAGACCTCTCACACCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098217.3 ENSMUST00000213432.2 |
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| CDS CAA 72 bp | ATTATGATTGCAAAACCCACTGCAATGATTCGAGAATaGGTTAAGATCATAGCATACCTCAGTGGGTTACAG | + |
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Preference number: 6 (lower is better) Translates to: IMIAKPTAMIRE*VKIIAYLSGLQ Trigger: CTGTAACCCACTGAGGTATGCTATGATCTTAACCAATTCTCGAATCATTGCAGTGGGTTTTGCAATCATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098217.3 ENSMUST00000213432.2 |
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