Pregenerated sensors for OLFR557 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073967Ensembl transcript IDs: ENSMUST00000098218.3, ENSMUST00000215423.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAAGAGGAGGCAGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTaGTATGAGTGGCTGTCTTCTGGCTGCTACAGTCGGGAACACAGA | + |
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Preference number: 1 (lower is better) Translates to: RRGGRRLGEPMGGKE*YEWLSSGCYSREHR Trigger: TCTGTGTTCCCGACTGTAGCAGCCAGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCTGCCTCCTCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR GCA 90 bp | GAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCTGTCTTCTGGCTaGTACAGTCGGGAACACAGAGCAGATATGACCATTTGCAAAAAC | + |
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Preference number: 1 (lower is better) Translates to: EPMGGKECYEWLSSG*YSREHRADMTICKN Trigger: GTTTTTGCAAATGGTCATATCTGCTCTGTGTTCCCGACTGTAGCAGCCAGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR TCA 90 bp | AAGGTATCAAGATGCCTTCTGGGAACAAAGCAGGAGAGTAACTGGTaGGGAGCTGTCATAGAAGAGGAGGCAGAAGACTGGGAGAGCCTA | + |
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Preference number: 1 (lower is better) Translates to: KVSRCLLGTKQESNW*GAVIEEEAEDWESL Trigger: TAGGCTCTCCCAGTCTTCTGCCTCCTCTTCTATGACAGCTCCTCACCAGTTACTCTCCTGCTTTGTTCCCAGAAGGCATCTTGATACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR TCA 90 bp | CCTAATAACTGGTCTCCAAATAAAGCCATTAATCTTAATTCCAAATaGCTCCAACCTCACATGCTCCCTTTTCTGATAACAGCAGAAACC | + |
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Preference number: 1 (lower is better) Translates to: PNNWSPNKAINLNSK*LQPHMLPFLITAET Trigger: GGTTTCTGCTGTTATCAGAAAAGGGAGCATGTGAGGTTGGAGTCATTTGGAATTAAGATTAATGGCTTTATTTGGAGACCAGTTATTAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CCA 90 bp | AGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAGAGGTGGGTTGCATGATGTaGTCAGATCCTTATCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: RTSWGQGPCRSGRGGKREVGCMM*SDPYPV Trigger: GACAGGATAAGGATCTGACCACATCATGCAACCCAC...CTCTCTCTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTATCAAGATGCCTTCTGGGAACAAAGCAGGAGAGTAACTGGTGAGGAGCTGAGCAGAAACCACATCTaGAAGAGGTTGTTCTCCATG | + |
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Preference number: 2 (lower is better) Translates to: RYQDAFWEQSRRVTGEELSRNHI*KRLFSM Trigger: CATGGAGAACAACCTCTTTCAGATGTGGTTTCTGCT...CAGCTCCTCACCAGTTACTCTCCTGCTTTGTTCCCAGAAGGCATCTTGATACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CCA 90 bp | AAGAGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAAGAAACCCAGAGTTGTaGTCAAATGTTTCAATAATC | + |
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Preference number: 2 (lower is better) Translates to: KRTSWGQGPCRSGRGGKRRNPEL*SNVSII Trigger: GATTATTGAAACATTTGACCACAACTCTGGGTTTCT...TCTCTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR TCA 90 bp | TTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCATTTCTGTCCAGTGGGTTGCATaGTGTGGTCAGATCCTTATC | + |
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Preference number: 2 (lower is better) Translates to: FIISLNAHNHPTRPTCISVQWVA*CGQILI Trigger: GATAAGGATCTGACCACATCATGCAACCCACTGGAC...AGAAATGCAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTGGGAGAGGGGGTAAGAGAGAGTAATGTGGATAGACATCACAATGTCTTGAATAGGCCTAATAACTaGTCTCCAAATAAAGCCATT | + |
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Preference number: 2 (lower is better) Translates to: GVGEGVRESNVDRHHNVLNRPNN*SPNKAI Trigger: AATGGCTTTATTTGGAGACCAGTTATTAGGCCTATT...CAAGACATTGTGATGTCTATCCACATTACTCTCTCTTACCCCCTCTCCCACTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR CAA 90 bp | TGCATAATCTATCTGTATATAATTAGAGGGAGACAGTCCAGTGGGTaGCATGATGTGGTCAGATCCTTATCCTGTCATTTGTGGTATGAT | + |
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Preference number: 2 (lower is better) Translates to: CIIYLYIIRGRQSSG*HDVVRSLSCHLWYD Trigger: ATCATACCACAAATGACAGGATAAGGATCTGACCACATCATGCAACCCACTGGACTGTCTCCCTCTAATTATATACAGATAGATTATGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR TCA 72 bp | AAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATaGGTGGCTGTCTTCTGGCTGCTACAGTCGGGAACA | + |
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Preference number: 3 (lower is better) Translates to: KTGRAYGWEGVL*VAVFWLLQSGT Trigger: TGTTCCCGACTGTAGCAGCCAGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR GCA 72 bp | GGTGGGAAGGAGTGCTATGAGTGGCTGTCTTCTGGCTaGTACAGTCGGGAACACAGAGCAGATATGACCATT | + |
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Preference number: 3 (lower is better) Translates to: GGKECYEWLSSG*YSREHRADMTI Trigger: AATGGTCATATCTGCTCTGTGTTCCCGACTGTAGCAGCCAGAAGACAGCCACTCATAGCACTCCTTCCCACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CAA 90 bp | AGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCTGTCTTCTTCCAACAAGGCCTACTaGCATTTCTGTTTCATAGTA | + |
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Preference number: 3 (lower is better) Translates to: RRLGEPMGGKECYEWLSSSNKAY*HFCFIV Trigger: TACTATGAAACAGAAATGCAAGTAGGCCTTGTTGGA...AGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CAA 90 bp | AGGTATCAAGATGCCTTCTGGGAACAAAGCAGGAGAGTAACTGGTGAGGAGCTGGAAAGAAACCCAGAGTaGTGGTCAAATGTTTCAATA | + |
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Preference number: 3 (lower is better) Translates to: RYQDAFWEQSRRVTGEELERNPE*WSNVSI Trigger: TATTGAAACATTTGACCACAACTCTGGGTTTCTTTC...CAGCTCCTCACCAGTTACTCTCCTGCTTTGTTCCCAGAAGGCATCTTGATACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR TCA 72 bp | CATGCTCCCTTTTCTGATAACAGCAGAAACCACATCTaGAAGAGGTTGTTCTCCATGAAGGTCTGTCTAGAC | + |
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Preference number: 3 (lower is better) Translates to: HAPFSDNSRNHI*KRLFSMKVCLD Trigger: GTCTAGACAGACCTTCATGGAGAACAACCTCTTTCAGATGTGGTTTCTGCTGTTATCAGAAAAGGGAGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR-3UTR CAA 90 bp | TTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCATTTCTAGACAGTCCAGTGGGTaGCATGATGTGGTCAGATCC | + |
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Preference number: 3 (lower is better) Translates to: FIISLNAHNHPTRPTCISRQSSG*HDVVRS Trigger: GGATCTGACCACATCATGCAACCCACTGGACTGTCT...AGAAATGCAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR TCA 72 bp | TGGTCTCCAAATAAAGCCATTAATCTTAATTCCAAATaGCTCCAACCTCACATGCTCCCTTTTCTGATAACA | + |
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Preference number: 3 (lower is better) Translates to: WSPNKAINLNSK*LQPHMLPFLIT Trigger: TGTTATCAGAAAAGGGAGCATGTGAGGTTGGAGTCATTTGGAATTAAGATTAATGGCTTTATTTGGAGACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR GCA 90 bp | AGGAAGAGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGGTACATGGGCTCATaGAAGCGCCTCTCCACACGA | + |
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Preference number: 4 (lower is better) Translates to: RKRTSWGQGPCRSGRGGKRYMGS*KRLSTR Trigger: TCGTGTGGAGAGGCGCTTGCATGAGCCCATGTACCT...CTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCTCTTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CCA 90 bp | AGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAGAGCGAGGAAGAGGTACATaGGCTCATGCAAGCGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: RTSWGQGPCRSGRGGKRERGRGT*AHASAS Trigger: AGAGGCGCTTGCATGAGCCCATGTACCTCTTCCTCG...CTCTCTCTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | AGGAAGAGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGCCACTGATAGCCCAATaGGGGGTACATAGAAGACCA | + |
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Preference number: 4 (lower is better) Translates to: RKRTSWGQGPCRSGRGGKPLIAQ*GVHRRP Trigger: TGGTCTTCTATGTACCCCTCATTGGGCTATCAGTGG...CTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCTCTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | AGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAGAGATGGCAGATAGGGCATaGATAAGGAACATTTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: RTSWGQGPCRSGRGGKREMADRA*IRNIWV Trigger: GACCCAAATGTTCCTTATTCATGCCCTATCTGCCAT...CTCTCTCTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CCA 90 bp | GAGGAGGCAGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCAAAGCCAGCCAAAAGTaGATTTTAGATCCTAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: EEAEDWESLWVGRSAMSGKASQK*ILDPRP Trigger: TGGCCTAGGATCTAAAATCCACTTTTGGCTGGCTTT...GCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCTGCCTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CCA 90 bp | AAGAGAACTAGCTGGGGACAAGGACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAAGAATACAAATCCCCTaGCTAGGGAAGCTAGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: KRTSWGQGPCRSGRGGKRRIQIP*LGKLGQ Trigger: TTGGCCTAGCTTCCCTAGCCAGGGGATTTGTATTCT...TCTCTTACCCCCTCTCCCACTCCTACAGGGTCCTTGTCCCCAGCTAGTTCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | AGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCTGTCTTCTTTGAACTCGATCTCCTaGATGCCAGTTAGGAACAAG | + |
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Preference number: 4 (lower is better) Translates to: RRLGEPMGGKECYEWLSSLNSIS*MPVRNK Trigger: CTTGTTCCTAACTGGCATTCAGGAGATCGAGTTCAA...AGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR GCA 90 bp | AGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCTGTCTTCTGATCTCCTTGGTCTTTaGTCCATACACAATGGGATT | + |
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Preference number: 4 (lower is better) Translates to: RRLGEPMGGKECYEWLSSDLLGL*SIHNGI Trigger: AATCCCATTGTGTATGGAGCAAAGACCAAGGAGATC...AGAAGACAGCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | GGAGTGGGAGAGGGGGTAAGAGAGAGTAATGTGGATAGACATCACAATGTCTTGTATAGGAAAAGCCAATaGAGAGGGAGTCCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: GVGEGVRESNVDRHHNVLYRKSQ*RGSPHP Trigger: TGGGTGTGGACTCCCTCTTCATTGGCTTTTCCTATA...CAAGACATTGTGATGTCTATCCACATTACTCTCTCTTACCCCCTCTCCCACTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | GACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAGAGTAATGTGGATAGACATCACATGTGTTTGGCAATATaGCAGACGCTTCAAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: DPVGVGEGVRESNVDRHHMCLAI*QTLQKE Trigger: TTCCTTTTGAAGCGTCTGTCATATTGCCAAACACAT...GTGATGTCTATCCACATTACTCTCTCTTACCCCCTCTCCCACTCCTACAGGGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CCA 90 bp | AGGTATCAAGATGCCTTCTGGGAACAAAGCAGGAGAGTAACTGGTGAGGAGCTGGTGACAGTATGTGTTTaGCAATATGACAGACGCTTC | + |
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Preference number: 4 (lower is better) Translates to: RYQDAFWEQSRRVTGEELVTVCV*QYDRRF Trigger: GAAGCGTCTGTCATATTGCCAAACACATACTGTCAC...CAGCTCCTCACCAGTTACTCTCCTGCTTTGTTCCCAGAAGGCATCTTGATACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | TTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCATTTCTGGGTCAAGCAAATGTTaGACTCGATCTCCTGAATGC | + |
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Preference number: 4 (lower is better) Translates to: FIISLNAHNHPTRPTCISGSSKC*TRSPEC Trigger: GCATTCAGGAGATCGAGTTCAACATTTGCTTGACCC...AGAAATGCAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR TCA 90 bp | GTTTGTATTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCATACACAATGGGATTaGCTACAGGTGGTAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: VCIYYLIECPQSSNKAYLHTQWD*LQVVAG Trigger: TCCTGCTACCACCTGTAGTCAATCCCATTGTGTATG...CAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAATACAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR GCA 90 bp | GTTTGTATTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGACTCGATCTCCTGAATaGCAGTTAGGAACAAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VCIYYLIECPQSSNKAYLTRSPE*QLGTSW Trigger: CCAGCTTGTTCCTAACTGGCATTCAGGAGATCGAGT...CAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAATACAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CCA 90 bp | TTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCATTTCTTTAGCCATAACCACATaGACCAAAGATGTGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: FIISLNAHNHPTRPTCISLAITT*TKDVGP Trigger: TGGTCCCACATCTTTGGTCCATGTGGTTATGGCTAA...AGAAATGCAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR CAA 72 bp | GTAAGAGAGAGTAATGTGGATAGACATCACAATGTCTaGTACTCATCTATGAAGTTGACAAAAGGAAATGCT | + |
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Preference number: 4 (lower is better) Translates to: VRESNVDRHHNV*YSSMKLTKGNA Trigger: AGCATTTCCTTTTGTCAACTTCATAGATGAGTACAAGACATTGTGATGTCTATCCACATTACTCTCTCTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| 3UTR CAA 72 bp | CTCATTGAATGCCCACAATCATCCAACAAGGCCTACTaGCATTTCTGTTTCATAGTATTAATAGTTTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LIECPQSSNKAY*HFCFIVLIVSK Trigger: TTTTGAAACTATTAATACTATGAAACAGAAATGCAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CAA 90 bp | GAGGAGGCAGAAGACTGGGAGAGCCTATGGGTGGGAAGGAGTGCTATGAGTGGCTGGGAGATGCAGGTGTaGAAAGCCTTGAGTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: EEAEDWESLWVGRSAMSGWEMQV*KALSAA Trigger: GGCAGCACTCAAGGCTTTCAACACCTGCATCTCCCA...GCCACTCATAGCACTCCTTCCCACCCATAGGCTCTCCCAGTCTTCTGCCTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS TCA 90 bp | GTGGGAGATGCAGGTGTTGAAAGCCTTGAGTGCTGCCCCTCGAGTTaGAAGCTCCAACACAGCCCTCAGGATGAGGATATAGGAAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: VGDAGVESLECCPSS*KLQHSPQDEDIGKA Trigger: GGCTTTTCCTATATCCTCATCCTGAGGGCTGTGTTGGAGCTTTCAACTCGAGGGGCAGCACTCAAGGCTTTCAACACCTGCATCTCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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| CDS-3UTR CAA 90 bp | GGAGTGGGAGAGGGGGTAAGAGAGAGTAATGTGGATAGACATCACAATGTCTTGAAGATGATGGCCAGGTaGCCCAGTGTGGCCACTGCA | + |
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Preference number: 5 (lower is better) Translates to: GVGEGVRESNVDRHHNVLKMMAR*PSVATA Trigger: TGCAGTGGCCACACTGGGCAACCTGGCCATCATCTT...CAAGACATTGTGATGTCTATCCACATTACTCTCTCTTACCCCCTCTCCCACTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CAA 90 bp | GACCCTGTAGGAGTGGGAGAGGGGGTAAGAGAGAGTAATGTGGATAGACATCACCTTGAACGGATCTCCTaGGTCTTTGCTCCATACACA | + |
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Preference number: 5 (lower is better) Translates to: DPVGVGEGVRESNVDRHHLERIS*VFAPYT Trigger: TGTGTATGGAGCAAAGACCAAGGAGATCCGTTCAAG...GTGATGTCTATCCACATTACTCTCTCTTACCCCCTCTCCCACTCCTACAGGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTATTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCAGGTGTTGAAAGCCTaGAGTGCTGCCCCTCGAGTT | + |
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Preference number: 5 (lower is better) Translates to: VCIYYLIECPQSSNKAYLQVLKA*SAAPRV Trigger: AACTCGAGGGGCAGCACTCAAGGCTTTCAACACCTG...CAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAATACAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS-3UTR CAA 90 bp | GTTTGTATTTATTATCTCATTGAATGCCCACAATCATCCAACAAGGCCTACTTGCCATACACAATGGGATaGACTACAGGTGGTAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: VCIYYLIECPQSSNKAYLPYTMG*TTGGSR Trigger: CCTGCTACCACCTGTAGTCAATCCCATTGTGTATGG...CAAGTAGGCCTTGTTGGATGATTGTGGGCATTCAATGAGATAATAAATACAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215423.2 |
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| CDS TCA 90 bp | ACGACATTAACTTTGGTATCAGTACAGGACAGCTTCATAATGTCTTaGTGGAGACAGAAGGAGTGTGTGACAGTATGTGTTTGGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: TTLTLVSVQDSFIMS*WRQKECVTVCVWQY Trigger: ATATTGCCAAACACATACTGTCACACACTCCTTCTGTCTCCATCAAGACATTATGAAGCTGTCCTGTACTGATACCAAAGTTAATGTCGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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| CDS CAA 90 bp | GGAAAGAAGAATACAAATCCCCTGGCTAGGGAAGCTAGGCCAATCTaGGCGACAGTAGTCCCTGTGAGCACAGAAGCATGGCGTAACGGG | + |
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Preference number: 6 (lower is better) Translates to: GKKNTNPLAREARPI*ATVVPVSTEAWRNG Trigger: CCCGTTACGCCATGCTTCTGTGCTCACAGGGACTACTGTCGCCAAGATTGGCCTAGCTTCCCTAGCCAGGGGATTTGTATTCTTCTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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| CDS CAA 72 bp | AATACAAATCCCCTGGCTAGGGAAGCTAGGCCAATCTaGGCGACAGTAGTCCCTGTGAGCACAGAAGCATGG | + |
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Preference number: 6 (lower is better) Translates to: NTNPLAREARPI*ATVVPVSTEAW Trigger: CCATGCTTCTGTGCTCACAGGGACTACTGTCGCCAAGATTGGCCTAGCTTCCCTAGCCAGGGGATTTGTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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| CDS TCA 72 bp | AACATTTGGGTCAAGCAAATGTTGAACTCGATCTCCTaGATGCCAGTTAGGAACAAGCTGGCCATTTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: NIWVKQMLNSIS*MPVRNKLAILG Trigger: GCCCAAAATGGCCAGCTTGTTCCTAACTGGCATTCAGGAGATCGAGTTCAACATTTGCTTGACCCAAATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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| CDS TCA 72 bp | ACTTTGGTATCAGTACAGGACAGCTTCATAATGTCTTaGTGGAGACAGAAGGAGTGTGTGACAGTATGTGTT | + |
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Preference number: 6 (lower is better) Translates to: TLVSVQDSFIMS*WRQKECVTVCV Trigger: AACACATACTGTCACACACTCCTTCTGTCTCCATCAAGACATTATGAAGCTGTCCTGTACTGATACCAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098218.3 ENSMUST00000215423.2 |
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