RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR523 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051051

Ensembl transcript IDs: ENSMUST00000055890.6, ENSMUST00000209314.3, ENSMUST00000213953.2, ENSMUST00000214272.2, ENSMUST00000215785.2, ENSMUST00000216023.2

Found 179 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTaGAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAA +
Preference number: 1 (lower is better)
Translates to: GGWHLHLWPIPGRGH*REELLCPTWDSTLE
Trigger: TTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 90 bp CGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTaGCATTTGGGAGGTAGAGGCAGGAGGGTCACAAGCTCAAGGTCA +
Preference number: 1 (lower is better)
Translates to: RSPGFHPQNHKTEHQ*HLGGRGRRVTSSRS
Trigger: TGACCTTGAGCTTGTGACCCTCCTGCCTCTACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 90 bp CAGCAGAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTaGGGGTCAGCACTTCCTCTGGCTCCAGACCTTGGGAGAAGAGGA +
Preference number: 1 (lower is better)
Translates to: QQRRLSVQIQLSVQA*GSALPLAPDLGRRG
Trigger: TCCTCTTCTCCCAAGGTCTGGAGCCAGAGGAAGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 90 bp CTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTaGGAGGTAGAGGCAGGAGGGTCACAAGCTCAAGGTCACTCTCAG +
Preference number: 1 (lower is better)
Translates to: LASIPRTTKQSISAI*EVEAGGSQAQGHSQ
Trigger: CTGAGAGTGACCTTGAGCTTGTGACCCTCCTGCCTCTACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 90 bp TCCACTCCCTACAGACAAAGACCCAGAAATGCAGTAGATACACCTTaGGACCCTAGTGCAAGCCCAGCAAGCCCTTGCAGGACCTCAGCT +
Preference number: 1 (lower is better)
Translates to: STPYRQRPRNAVDTP*DPSASPASPCRTSA
Trigger: AGCTGAGGTCCTGCAAGGGCTTGCTGGGCTTGCACTAGGGTCTCAAGGTGTATCTACTGCATTTCTGGGTCTTTGTCTGTAGGGAGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 90 bp GCCCAGCAAGCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTaGTTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT +
Preference number: 1 (lower is better)
Translates to: AQQALAGPQLPLSLL*LFVCLLACLLACLL
Trigger: AAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 90 bp GACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTaGAACTGGGGGCTGGAACAACAAGCACTCCTGAACAAAGCCATA +
Preference number: 1 (lower is better)
Translates to: DLLGTQNPVSLLVSS*NWGLEQQALLNKAI
Trigger: TATGGCTTTGTTCAGGAGTGCTTGTTGTTCCAGCCCCCAGTTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 90 bp GTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTaGAAGACGGTAAAGAGAAAAGTCCGAGTGGATCATCTAGGCCTC +
Preference number: 1 (lower is better)
Translates to: VTAERSFYVLLGIPL*KTVKRKVRVDHLGL
Trigger: GAGGCCTAGATGATCCACTCGGACTTTTCTCTTTACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 90 bp TACTCTCCAGGTTTCCTTGAGACGGTACTGTCATGGTTACGTTTATaGATGAAGAAACAGGTTCGGTGTAGTGATGCTCTGTTTACCCCC +
Preference number: 1 (lower is better)
Translates to: YSPGFLETVLSWLRL*MKKQVRCSDALFTP
Trigger: GGGGGTAAACAGAGCATCACTACACCGAACCTGTTTCTTCATCCATAAACGTAACCATGACAGTACCGTCTCAAGGAAACCTGGAGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 90 bp ACCTCAGCTTCCTCTGAGCCTTCTGTGCTTGTTTGTTTGTTTGCTTaGTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGTTTTTCACCAT +
Preference number: 1 (lower is better)
Translates to: TSASSEPSVLVCLFA*LLACLLACLLVFHH
Trigger: ATGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 90 bp CAGCTTCCTCTGAGCCTTCTGTGCTTGTTTGTTTGTTTGCTTGCTTaGTTGCTTGCTTGCTTGCTTGCTTGCTTGTTTTTCACCATGATT +
Preference number: 1 (lower is better)
Translates to: QLPLSLLCLFVCLLA*LLACLLACLFFTMI
Trigger: AATCATGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 90 bp TGCACTTTAATTCACCATTTGGAAAGTAACCACAAAAACAGAGTATaGAAGTTCCAGCAGCAGAGACGGCTGAGTGTACAAATTCAGTTG +
Preference number: 1 (lower is better)
Translates to: CTLIHHLESNHKNRV*KFQQQRRLSVQIQL
Trigger: CAACTGAATTTGTACACTCAGCCGTCTCTGCTGCTGGAACTTGCATACTCTGTTTTTGTGGTTACTTTCCAAATGGTGAATTAAAGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCCCACAGGCCAGCCAATaGCAGTCCTGCAGAGCAGCC +
Preference number: 2 (lower is better)
Translates to: GELQPESEATQASRAPAPPQASQ*QSCRAA
Trigger: GGCTGCTCTGCAGGACTGTCATTGGCTGGCCTGTGG...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCGGCCCCCGCTCCCTCTaGTCCCTTCCTGTACCTCCA +
Preference number: 2 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCGPRSL*SLPVPP
Trigger: TGGAGGTACAGGAAGGGATCAGAGGGAGCGGGGGCC...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCGACCCCCTGATGGCCTaGCATGTCCTTCCTGGAGAT +
Preference number: 2 (lower is better)
Translates to: GELQPESEATQASRAPAPDPLMA*HVLPGD
Trigger: ATCTCCAGGAAGGACATGCCAGGCCATCAGGGGGTC...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GCCACAGAGGTTAGGACACAGGAGCCAGGAAAGTGTGAAAGCAGTCAGCCTGTGGGAGTCCAGTTGCTCTaGGGTCCCCGGGGACTGAGA +
Preference number: 2 (lower is better)
Translates to: ATEVRTQEPGKCESSQPVGVQLL*GPRGLR
Trigger: TCTCAGTCCCCGGGGACCCCAGAGCAACTGGACTCC...CACAGGCTGACTGCTTTCACACTTTCCTGGCTCCTGTGTCCTAACCTCTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCGGAGCCAGGAAAGTGTaGAAGCAGTCAGCCTGTGGT +
Preference number: 2 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCGARKV*KQSACG
Trigger: ACCACAGGCTGACTGCTTTCACACTTTCCTGGCTCC...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CCTTGGGAGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCGACCCCCTGATGGCCTaGCATGTCCTTCCTGGAGAT +
Preference number: 2 (lower is better)
Translates to: PWEKRNSRWVASSPVAHPDPLMA*HVLPGD
Trigger: ATCTCCAGGAAGGACATGCCAGGCCATCAGGGGGTC...GGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp GCCACAGAGGTTAGGACACAGGAGCCAGGAAAGTGTGAAAGCAGTCAGCCTGTGAGCCCAGCAAGCCCTTaGAGGACCTCAGCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: ATEVRTQEPGKCESSQPVSPASP*RTSASS
Trigger: AGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGCT...CACAGGCTGACTGCTTTCACACTTTCCTGGCTCCTGTGTCCTAACCTCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCCTGGCATGTCCTTCCTaGAGATTCCAGGTATGGCTT +
Preference number: 2 (lower is better)
Translates to: GELQPESEATQASRAPAPLACPS*RFQVWL
Trigger: AAGCCATACCTGGAATCTCCAGGAAGGACATGCCAG...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CCTTGGGAGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCGCATTCACGAAGCCCTaGCTTCCATCCCCAGAACCA +
Preference number: 2 (lower is better)
Translates to: PWEKRNSRWVASSPVAHPAFTKP*LPSPEP
Trigger: TGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGC...GGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGGGAGTCCAGTTGCTCTaGGGTCCCCGGGGACTGAGA +
Preference number: 2 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKGVQLL*GPRGLR
Trigger: TCTCAGTCCCCGGGGACCCCAGAGCAACTGGACTCC...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTGGAGTCCAGTTGCTCTaGGGTCCCCGGGGACTGAGA +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTGVQLL*GPRGLR
Trigger: TCTCAGTCCCCGGGGACCCCAGAGCAACTGGACTCC...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCCTCTCCAGGTTTCCTTaGGACGGTACTGTCATGGTT +
Preference number: 2 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCLSRFP*DGTVMV
Trigger: AACCATGACAGTACCGTCTCAAGGAAACCTGGAGAG...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCCTCTCCAGGTTTCCTTaGGACGGTACTGTCATGGTT +
Preference number: 2 (lower is better)
Translates to: AQSAERMFSIHEALASIPLSRFP*DGTVMV
Trigger: AACCATGACAGTACCGTCTCAAGGAAACCTGGAGAG...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CTGATGGCCTGGCATGTCCTTCCTGGAGATTCCAGGTATGGCTTGGTGACATCCGGGTCTGGCCAGAACTaGCGCACAGCTTCTGGTATT +
Preference number: 2 (lower is better)
Translates to: LMAWHVLPGDSRYGLVTSGSGQN*RTASGI
Trigger: AATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCC...GGATGTCACCAAGCCATACCTGGAATCTCCAGGAAGGACATGCCAGGCCATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCCTGGCATGTCCTTCCTaGAGATTCCAGGTATGGCTT +
Preference number: 2 (lower is better)
Translates to: AQSAERMFSIHEALASIPLACPS*RFQVWL
Trigger: AAGCCATACCTGGAATCTCCAGGAAGGACATGCCAG...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GGTCCCCGGGGACTGAGAGATCAGGGTGGACACAGGCACTATTGGTTGTCCAGACTGGCATGTCCTTCCTaGAGATTCCAGGTATGGCTT +
Preference number: 2 (lower is better)
Translates to: GPRGLRDQGGHRHYWLSRLACPS*RFQVWL
Trigger: AAGCCATACCTGGAATCTCCAGGAAGGACATGCCAG...TCTGGACAACCAATAGTGCCTGTGTCCACCCTGATCTCTCAGTCCCCGGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTaGGGAGGTAGAGGCAGGAGGGTCACAAGCTCAAGGTCACTCTCA +
Preference number: 2 (lower is better)
Translates to: PGFHPQNHKTEHQCH*GGRGRRVTSSRSLS
Trigger: TGAGAGTGACCTTGAGCTTGTGACCCTCCTGCCTCTACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGACCTCAGCTTCCTCTaGGCCTTCTGTGCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRDLSFL*AFCACL
Trigger: CAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTC...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp CCTTGGGAGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCCTCTCCAGGTTTCCTTaGGACGGTACTGTCATGGTT +
Preference number: 2 (lower is better)
Translates to: PWEKRNSRWVASSPVAHPLSRFP*DGTVMV
Trigger: AACCATGACAGTACCGTCTCAAGGAAACCTGGAGAG...GGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATAGCCCAGCAAGCCCTTaGAGGACCTCAGCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHSPASP*RTSASS
Trigger: AGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGCT...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTAGCCCAGCAAGCCCTTaGAGGACCTCAGCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTSPASP*RTSASS
Trigger: AGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGCT...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCAAAACAGAGCATCAGTaGCATTTGGGAGGTAGAGGC +
Preference number: 2 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCKTEHQ*HLGGRG
Trigger: GCCTCTACCTCCCAAATGGCACTGATGCTCTGTTTT...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGGCCTCAGACATGGGCTaGACAGAACAGAGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWASDMG*TEQRSH
Trigger: GTGGCTTCTCTGTTCTGTCCAGCCCATGTCTGAGGC...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTGGAGCCAGGAAAGTGTaGAAGCAGTCAGCCTGTGGT +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTGARKV*KQSACG
Trigger: ACCACAGGCTGACTGCTTTCACACTTTCCTGGCTCC...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp CACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAAGACGGTGGAGCCAGGAAAGTGTaGAAGCAGTCAGCCTGTGGT +
Preference number: 2 (lower is better)
Translates to: HCREELLCPTWDSTLEDGGARKV*KQSACG
Trigger: ACCACAGGCTGACTGCTTTCACACTTTCCTGGCTCC...ACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATGGGTCTGGCCAGAACTaGCGCACAGCTTCTGGTATT +
Preference number: 2 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHGSGQN*RTASGI
Trigger: AATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCC...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGGGGTCTGGCCAGAACTaGCGCACAGCTTCTGGTATT +
Preference number: 2 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKGSGQN*RTASGI
Trigger: AATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCC...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGCTGGCATGTCCTTCCTaGAGATTCCAGGTATGGCTT +
Preference number: 2 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRLACPS*RFQVWL
Trigger: AAGCCATACCTGGAATCTCCAGGAAGGACATGCCAG...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTGCATTCACGAAGCCCTaGCTTCCATCCCCAGAACCA +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTAFTKP*LPSPEP
Trigger: TGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGC...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATGACCTCAGCTTCCTCTaGGCCTTCTGTGCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHDLSFL*AFCACL
Trigger: CAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTC...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp CACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAAGACGGTGACCTCAGCTTCCTCTaGGCCTTCTGTGCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: HCREELLCPTWDSTLEDGDLSFL*AFCACL
Trigger: CAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTC...ACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCGGTTACGTTTATGGATaGAGAAACAGGTTCGGTGTA +
Preference number: 2 (lower is better)
Translates to: AQSAERMFSIHEALASIPGYVYG*RNRFGV
Trigger: TACACCGAACCTGTTTCTTCATCCATAAACGTAACC...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCGGTTACGTTTATGGATaGAGAAACAGGTTCGGTGTA +
Preference number: 2 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCGYVYG*RNRFGV
Trigger: TACACCGAACCTGTTTCTTCATCCATAAACGTAACC...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCACAAAGACCCAGAAATaGAGTAGATACACCTTGAGA +
Preference number: 2 (lower is better)
Translates to: GELQPESEATQASRAPAPTKTQK*SRYTLR
Trigger: TCTCAAGGTGTATCTACTGCATTTCTGGGTCTTTGT...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp GCCACAGAGGTTAGGACACAGGAGCCAGGAAAGTGTGAAAGCAGTCAGCCTGTGAAAACAGAGCATCAGTaGCATTTGGGAGGTAGAGGC +
Preference number: 2 (lower is better)
Translates to: ATEVRTQEPGKCESSQPVKTEHQ*HLGGRG
Trigger: GCCTCTACCTCCCAAATGGCACTGATGCTCTGTTTT...CACAGGCTGACTGCTTTCACACTTTCCTGGCTCCTGTGTCCTAACCTCTGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 90 bp CAGCAAGCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTGCTaGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT +
Preference number: 2 (lower is better)
Translates to: QQALAGPQLPLSLLC*FVCLLACLLACLLA
Trigger: AGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp CACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAAGACGGTCTCTCCAGGTTTCCTTaGGACGGTACTGTCATGGTT +
Preference number: 2 (lower is better)
Translates to: HCREELLCPTWDSTLEDGLSRFP*DGTVMV
Trigger: AACCATGACAGTACCGTCTCAAGGAAACCTGGAGAG...ACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTGGCCTCTCCAAATCCTaGCAGCCAACCACTTATTCT +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTGLSKS*QPTTYS
Trigger: AGAATAAGTGGTTGGCTGTCAGGATTTGGAGAGGCC...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGTCAAAAAGCCCAAAGTaGAAACTCTCTCAGAGCCAC +
Preference number: 2 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRSKSPK*KLSQSH
Trigger: GTGGCTCTGAGAGAGTTTGCACTTTGGGCTTTTTGA...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTCTTCTAGTATCTTCCTaGAACTGGGGGCTGGAACAA +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTLLVSS*NWGLEQ
Trigger: TTGTTCCAGCCCCCAGTTCCAGGAAGATACTAGAAG...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCTTCTAGTATCTTCCTaGAACTGGGGGCTGGAACAA +
Preference number: 2 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHLLVSS*NWGLEQ
Trigger: TTGTTCCAGCCCCCAGTTCCAGGAAGATACTAGAAG...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CTGATGGCCTGGCATGTCCTTCCTGGAGATTCCAGGTATGGCTTGGTGACATCCCTGGCGCACAGCTTCTaGTATTTATATTGGAGGTTT +
Preference number: 2 (lower is better)
Translates to: LMAWHVLPGDSRYGLVTSLAHSF*YLYWRF
Trigger: AAACCTCCAATATAAATACCAGAAGCTGTGCGCCAG...GGATGTCACCAAGCCATACCTGGAATCTCCAGGAAGGACATGCCAGGCCATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp TGCTTGCTTGCTTGCTTGTTTTTCACCATGATTAACCTCTGTGAGCATGGACCCGGGTCTGGCCAGAACTaGCGCACAGCTTCTGGTATT +
Preference number: 2 (lower is better)
Translates to: CLLACLFFTMINLCEHGPGSGQN*RTASGI
Trigger: AATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCC...GGGTCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGACAAGAGACACTCTaGCAACAATTCTCAAAAAGC +
Preference number: 2 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRGQETL*QQFSKS
Trigger: GCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCC...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR TCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGGGTTACGTTTATGGATaGAGAAACAGGTTCGGTGTA +
Preference number: 2 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWGYVYG*RNRFGV
Trigger: TACACCGAACCTGTTTCTTCATCCATAAACGTAACC...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTGGGAGGTCTGGCGCACAGCTTCTaGTATTTATATTGGAGGTTT +
Preference number: 2 (lower is better)
Translates to: PGFHPQNHKTEHQCHLGGLAHSF*YLYWRF
Trigger: AAACCTCCAATATAAATACCAGAAGCTGTGCGCCAG...ACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGCTGGCGCACAGCTTCTaGTATTTATATTGGAGGTTT +
Preference number: 2 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWLAHSF*YLYWRF
Trigger: AAACCTCCAATATAAATACCAGAAGCTGTGCGCCAG...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGTCATGGTTACGTTTATaGATGAAGAAACAGGTTCGG +
Preference number: 2 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRSWLRL*MKKQVR
Trigger: CCGAACCTGTTTCTTCATCCATAAACGTAACCATGA...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp TGCTTGCTTGCTTGCTTGTTTTTCACCATGATTAACCTCTGTGAGCATGGACCCGTATCTTCCTGGAACTaGGGGCTGGAACAACAAGCA +
Preference number: 2 (lower is better)
Translates to: CLLACLFFTMINLCEHGPVSSWN*GLEQQA
Trigger: TGCTTGTTGTTCCAGCCCCCAGTTCCAGGAAGATAC...GGGTCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTGGGAGGTTCATGGTTACGTTTATaGATGAAGAAACAGGTTCGG +
Preference number: 2 (lower is better)
Translates to: PGFHPQNHKTEHQCHLGGSWLRL*MKKQVR
Trigger: CCGAACCTGTTTCTTCATCCATAAACGTAACCATGA...ACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTCTTGGGATTCCACTCTaGAAGACGGTAAAGAGAAAA +
Preference number: 2 (lower is better)
Translates to: ETAECTNSVECASLRVSTLGIPL*KTVKRK
Trigger: TTTTCTCTTTACCGTCTTCCAGAGTGGAATCCCAAG...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR GCA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGACAAAGACCCAGAAATaGAGTAGATACACCTTGAGA +
Preference number: 2 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKTKTQK*SRYTLR
Trigger: TCTCAAGGTGTATCTACTGCATTTCTGGGTCTTTGT...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CAACTTGGACAAGAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTGCAAAGTATCTTCCTGGAACTaGGGGCTGGAACAACAAGCA +
Preference number: 2 (lower is better)
Translates to: QLGQETLWQQFSKSPKCKVSSWN*GLEQQA
Trigger: TGCTTGTTGTTCCAGCCCCCAGTTCCAGGAAGATAC...TTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 90 bp TCAGCTTCCTCTGAGCCTTCTGTGCTTGTTTGTTTGTTTGCTTGCTaGCTTGCTTGCTTGCTTGCTTGCTTGCTTGTTTTTCACCATGAT +
Preference number: 2 (lower is better)
Translates to: SASSEPSVLVCLFAC*LACLLACLLVFHHD
Trigger: ATCATGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CAACTTGGACAAGAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTGCAAACTTCTAGTATCTTCCTaGAACTGGGGGCTGGAACAA +
Preference number: 2 (lower is better)
Translates to: QLGQETLWQQFSKSPKCKLLVSS*NWGLEQ
Trigger: TTGTTCCAGCCCCCAGTTCCAGGAAGATACTAGAAG...TTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CCA 90 bp CAACTTGGACAAGAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTGCAAATCATGGTTACGTTTATaGATGAAGAAACAGGTTCGG +
Preference number: 2 (lower is better)
Translates to: QLGQETLWQQFSKSPKCKSWLRL*MKKQVR
Trigger: CCGAACCTGTTTCTTCATCCATAAACGTAACCATGA...TTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp GCTCTGTTTACCCCCAGGAGAATTACAACCAGAATCTaGGGCCACACAGGCATCCAGGGCCCCCGCTCCCTC +
Preference number: 3 (lower is better)
Translates to: ALFTPRRITTRI*GHTGIQGPRSL
Trigger: GAGGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCCTGGGGGTAAACAGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp GCTCCAGACCTTGGGAGAAGAGGAATTCTAGGTGGGTaGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGT +
Preference number: 3 (lower is better)
Translates to: APDLGRRGILGG*HLHLWPIPGRG
Trigger: ACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGGTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp CCCTCTGAGCTCTGTAGAGAGAAGGGTGCAGATCACTaGCTGACACTAGTCCAATCTGGCCCACAGGCCAGC +
Preference number: 3 (lower is better)
Translates to: PSELCREKGADH*LTLVQSGPQAS
Trigger: GCTGGCCTGTGGGCCAGATTGGACTAGTGTCAGTCAGTGATCTGCACCCTTCTCTCTACAGAGCTCAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp GAAGGGTGCAGATCACTGACTGACACTAGTCCAATCTaGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGC +
Preference number: 3 (lower is better)
Translates to: EGCRSLTDTSPI*PTGQPMTVLQS
Trigger: GCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATTGGACTAGTGTCAGTCAGTGATCTGCACCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp GAGCATGGACCCCCTGATGGCCTGGCATGTCCTTCCTaGAGATTCCAGGTATGGCTTGGTGACATCCATAGG +
Preference number: 3 (lower is better)
Translates to: EHGPPDGLACPS*RFQVWLGDIHR
Trigger: CCTATGGATGTCACCAAGCCATACCTGGAATCTCCAGGAAGGACATGCCAGGCCATCAGGGGGTCCATGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp CGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTaGGGGTCAGCACTTCCTCTGGCTCCAGACCTTGGG +
Preference number: 3 (lower is better)
Translates to: RLSVQIQLSVQA*GSALPLAPDLG
Trigger: CCCAAGGTCTGGAGCCAGAGGAAGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp AGCCTGAGGGTCAGCACTTCCTCTGGCTCCAGACCTTaGGAGAAGAGGAATTCTAGGTGGGTGGCATCTTCA +
Preference number: 3 (lower is better)
Translates to: SLRVSTSSGSRP*EKRNSRWVASS
Trigger: TGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGGTCTGGAGCCAGAGGAAGTGCTGACCCTCAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp GACAATCTGAGCTCTGGGGTGTATAGCTCAGTCAGCTaGGCGCATGTTCAGCATTCACGAAGCCCTGGCTTC +
Preference number: 3 (lower is better)
Translates to: DNLSSGVYSSVS*AHVQHSRSPGF
Trigger: GAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGCTATACACCCCAGAGCTCAGATTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCTGCTTGCTTGCTTGCTaGCTTGCTTGTTTTTCACCA +
Preference number: 3 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCCLLAC*LACFSP
Trigger: TGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCA...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp AAACTCTCTCAGAGCCACGGGGGCCTCTCCAAATCCTaGCAGCCAACCACTTATTCTCAATATGGGCCACCT +
Preference number: 3 (lower is better)
Translates to: KLSQSHGGLSKS*QPTTYSQYGPP
Trigger: AGGTGGCCCATATTGAGAATAAGTGGTTGGCTGTCAGGATTTGGAGAGGCCCCCGTGGCTCTGAGAGAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp CACAGGAGCCAGGAAAGTGTGAAAGCAGTCAGCCTGTaGTTAGACCCAGACGTGGTATTCGAGAGGATATGG +
Preference number: 3 (lower is better)
Translates to: HRSQESVKAVSL*LDPDVVFERIW
Trigger: CCATATCCTCTCGAATACCACGTCTGGGTCTAACCACAGGCTGACTGCTTTCACACTTTCCTGGCTCCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp GAGAAAAGTCCGAGTGGATCATCTAGGCCTCAGACATaGGCTGGACAGAACAGAGAAGCCACAGAGGTTAGG +
Preference number: 3 (lower is better)
Translates to: EKSPSGSSRPQT*AGQNREATEVR
Trigger: CCTAACCTCTGTGGCTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTAGGCCATGTCTCAACTaGGACAAGAGACACTCTGGC +
Preference number: 3 (lower is better)
Translates to: ETAECTNSVECASLRVSTRPCLN*DKRHSG
Trigger: GCCAGAGTGTCTCTTGTCCAAGTTGAGACATGGCCT...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCTGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAAC +
Preference number: 3 (lower is better)
Translates to: AQSAERMFSIHEALASIPCLLAC*FFTMIN
Trigger: GTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GGTCCCCGGGGACTGAGAGATCAGGGTGGACACAGGCACTATTGGTTGTCCAGATGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAAC +
Preference number: 3 (lower is better)
Translates to: GPRGLRDQGGHRHYWLSRCLLAC*FFTMIN
Trigger: GTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA...TCTGGACAACCAATAGTGCCTGTGTCCACCCTGATCTCTCAGTCCCCGGGGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GCCACAGAGGTTAGGACACAGGAGCCAGGAAAGTGTGAAAGCAGTCAGCCTGTGTGCTTGCTTGCTTGCTaGCTTGCTTGTTTTTCACCA +
Preference number: 3 (lower is better)
Translates to: ATEVRTQEPGKCESSQPVCLLAC*LACFSP
Trigger: TGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCA...CACAGGCTGACTGCTTTCACACTTTCCTGGCTCCTGTGTCCTAACCTCTGTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR TCA 72 bp TACAGACAAAGACCCAGAAATGCAGTAGATACACCTTaGGACCCTAGTGCAAGCCCAGCAAGCCCTTGCAGG +
Preference number: 3 (lower is better)
Translates to: YRQRPRNAVDTP*DPSASPASPCR
Trigger: CCTGCAAGGGCTTGCTGGGCTTGCACTAGGGTCTCAAGGTGTATCTACTGCATTTCTGGGTCTTTGTCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 72 bp GCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTaGTTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCT +
Preference number: 3 (lower is better)
Translates to: ALAGPQLPLSLL*LFVCLLACLLA
Trigger: AGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR GCA 72 bp GAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTaGAAACTCTCTCAGAGCCACGGGGGCCTCTCCAAA +
Preference number: 3 (lower is better)
Translates to: ETLWQQFSKSPK*KLSQSHGGLSK
Trigger: TTTGGAGAGGCCCCCGTGGCTCTGAGAGAGTTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATTGCTTGCTTGCTTGCTaGCTTGCTTGTTTTTCACCA +
Preference number: 3 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHCLLAC*LACFSP
Trigger: TGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCA...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGTGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAAC +
Preference number: 3 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWCLLAC*FFTMIN
Trigger: GTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTTGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAAC +
Preference number: 3 (lower is better)
Translates to: ETAECTNSVECASLRVSTCLLAC*FFTMIN
Trigger: GTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR-3UTR CAA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATTGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAAC +
Preference number: 3 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHCLLAC*FFTMIN
Trigger: GTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp GGTTTCCTTGAGACGGTACTGTCATGGTTACGTTTATaGATGAAGAAACAGGTTCGGTGTAGTGATGCTCTG +
Preference number: 3 (lower is better)
Translates to: GFLETVLSWLRL*MKKQVRCSDAL
Trigger: CAGAGCATCACTACACCGAACCTGTTTCTTCATCCATAAACGTAACCATGACAGTACCGTCTCAAGGAAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CCA 72 bp TGGTATTCGAGAGGATATGGAGGCCATGTCTCAACTTaGACAAGAGACACTCTGGCAACAATTCTCAAAAAG +
Preference number: 3 (lower is better)
Translates to: WYSRGYGGHVST*TRDTLATILKK
Trigger: CTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTGAGACATGGCCTCCATATCCTCTCGAATACCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGCAGGAAGAGCCCAATaGGCATGCTCCTTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAAGRAQ*ACSLAP
Trigger: CGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGC...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCAGCCAGCCAAGGAGATaGCTCCACCCCGGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRASQPRR*LHPGEQ
Trigger: TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCT...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGAGCCAGCCAAGGAGATaGCTCCACCCCGGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVSQPRR*LHPGEQ
Trigger: TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCT...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: GELQPESEATQASRAPAPATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: AQSAERMFSIHEALASIPARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GGTCCCCGGGGACTGAGAGATCAGGGTGGACACAGGCACTATTGGTTGTCCAGAGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: GPRGLRDQGGHRHYWLSRARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...TCTGGACAACCAATAGTGCCTGTGTCCACCCTGATCTCTCAGTCCCCGGGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: AQSAERMFSIHEALASIPATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGCACCCACCAGGGAGATaGTGGCCAGGTTTCCAGCTA +
Preference number: 4 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVHPPGR*WPGFQL
Trigger: TAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTG...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp CCTTGGGAGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCGCAGGAAGAGCCCAATaGGCATGCTCCTTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: PWEKRNSRWVASSPVAHPAGRAQ*ACSLAP
Trigger: CGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGC...GGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCTCCCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTCTGTAGGCATCTGTaGGCACCCACCAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAVCRHL*APTREM
Trigger: CATCTCCCTGGTGGGTGCCCACAGATGCCTACAGAC...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GCCCAGCAAGCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTGCTTGTTTGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: AQQALAGPQLPLSLLCLFATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...AAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp AGAAGAGGAATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: RRGILGGWHLHLWPIPGRARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...CCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAATTCCTCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp AATCTGGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGACACCCACCAGGGAGATaGTGGCCAGGTTTCCAGCTA +
Preference number: 4 (lower is better)
Translates to: NLAHRPANDSPAEQPLTGHPPGR*WPGFQL
Trigger: TAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTG...TCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp CTGATGGCCTGGCATGTCCTTCCTGGAGATTCCAGGTATGGCTTGGTGACATCCGCAGGAAGAGCCCAATaGGCATGCTCCTTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: LMAWHVLPGDSRYGLVTSAGRAQ*ACSLAP
Trigger: CGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGC...GGATGTCACCAAGCCATACCTGGAATCTCCAGGAAGGACATGCCAGGCCATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp AATCTGGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGTCTGTAGGCATCTGTaGGCACCCACCAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: NLAHRPANDSPAEQPLTGVCRHL*APTREM
Trigger: CATCTCCCTGGTGGGTGCCCACAGATGCCTACAGAC...TCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGGCGCGGTGCCGGCCCTaGGCAGAGGGAATCTTGATG +
Preference number: 4 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWARCRP*AEGILM
Trigger: CATCAAGATTCCCTCTGCCCAGGGCCGGCACCGCGC...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTGGGAGGTAGCCAGCCAAGGAGATaGCTCCACCCCGGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: PGFHPQNHKTEHQCHLGGSQPRR*LHPGEQ
Trigger: TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCT...ACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGGCCACCGTAGCGCAGTaGCAGGCAGATGGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWATVAQ*QADGQV
Trigger: TACCTGGCCATCTGCCTGCCACTGCGCTACGGTGGC...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCCACAGGAGCCCAGAATaGCACAGAAGGCAATACCAA +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAHRSPE*HRRQYQ
Trigger: TTGGTATTGCCTTCTGTGTCATTCTGGGCTCCTGTG...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCCACAGGAGCCCAGAATaGCACAGAAGGCAATACCAA +
Preference number: 4 (lower is better)
Translates to: GELQPESEATQASRAPAPHRSPE*HRRQYQ
Trigger: TTGGTATTGCCTTCTGTGTCATTCTGGGCTCCTGTG...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGGCAGGAAGAGCCCAATaGGCATGCTCCTTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKAGRAQ*ACSLAP
Trigger: CGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGC...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTGGGAGGTCACCCACCAGGGAGATaGTGGCCAGGTTTCCAGCTA +
Preference number: 4 (lower is better)
Translates to: PGFHPQNHKTEHQCHLGGHPPGR*WPGFQL
Trigger: TAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTG...ACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCCACAGGAGCCCAGAATaGCACAGAAGGCAATACCAA +
Preference number: 4 (lower is better)
Translates to: AQSAERMFSIHEALASIPHRSPE*HRRQYQ
Trigger: TTGGTATTGCCTTCTGTGTCATTCTGGGCTCCTGTG...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGTCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVSSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAAGCAGGAAGAGCCCAATaGGCATGCTCCTTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: EGPPRDSESCFPSSIFLEAGRAQ*ACSLAP
Trigger: CGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGC...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GGGGTCTGGCCAGAACTGGCGCACAGCTTCTGGTATTTATATTGGAGGTTTAGAAGCCAGCCAAGGAGATaGCTCCACCCCGGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: GVWPELAHSFWYLYWRFRSQPRR*LHPGEQ
Trigger: TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCT...TCTAAACCTCCAATATAAATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAAAGCCAGCCAAGGAGATaGCTCCACCCCGGGGAGCAA +
Preference number: 4 (lower is better)
Translates to: EGPPRDSESCFPSSIFLESQPRR*LHPGEQ
Trigger: TTGCTCCCCGGGGTGGAGCCATCTCCTTGGCTGGCT...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GAGACGGCTGAGTGTACAAATTCAGTTGAGTGTGCAAGCCTGAGGGTCAGCACTCACCCACCAGGGAGATaGTGGCCAGGTTTCCAGCTA +
Preference number: 4 (lower is better)
Translates to: ETAECTNSVECASLRVSTHPPGR*WPGFQL
Trigger: TAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTG...AGTGCTGACCCTCAGGCTTGCACACTCAACTGAATTTGTACACTCAGCCGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GCCCAGCAAGCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTGCTTGTTTCACAGGAGCCCAGAATaGCACAGAAGGCAATACCAA +
Preference number: 4 (lower is better)
Translates to: AQQALAGPQLPLSLLCLFHRSPE*HRRQYQ
Trigger: TTGGTATTGCCTTCTGTGTCATTCTGGGCTCCTGTG...AAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp AATCTGGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGATCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: NLAHRPANDSPAEQPLTGSSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...TCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: PANDSPAEQPLTGDAHRASRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAAGACGGTGTCTGTAGGCATCTGTaGGCACCCACCAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: HCREELLCPTWDSTLEDGVCRHL*APTREM
Trigger: CATCTCCCTGGTGGGTGCCCACAGATGCCTACAGAC...ACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GGGGTCTGGCCAGAACTGGCGCACAGCTTCTGGTATTTATATTGGAGGTTTAGACACCCACCAGGGAGATaGTGGCCAGGTTTCCAGCTA +
Preference number: 4 (lower is better)
Translates to: GVWPELAHSFWYLYWRFRHPPGR*WPGFQL
Trigger: TAGCTGGAAACCTGGCCATCATCTCCCTGGTGGGTG...TCTAAACCTCCAATATAAATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp ACTGACACTAGTCCAATCTGGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGCTCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: TDTSPIWPTGQPMTVLQSSSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...GCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATTGGACTAGTGTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GCCCAGCAAGCCCTTGCAGGACCTCAGCTTCCTCTGAGCCTTCTGTGCTTGTTTTCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: AQQALAGPQLPLSLLCLFSSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...AAACAAGCACAGAAGGCTCAGAGGAAGCTGAGGTCCTGCAAGGGCTTGCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCSRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp ACTGACACTAGTCCAATCTGGCCCACAGGCCAGCCAATGACAGTCCTGCAGAGCAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: TDTSPIWPTGQPMTVLQSSRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...GCTCTGCAGGACTGTCATTGGCTGGCCTGTGGGCCAGATTGGACTAGTGTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCACAGGAGCCCAGAATaGCACAGAAGGCAATACCAA +
Preference number: 4 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHHRSPE*HRRQYQ
Trigger: TTGGTATTGCCTTCTGTGTCATTCTGGGCTCCTGTG...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp TGCTTGCTTGCTTGCTTGTTTTTCACCATGATTAACCTCTGTGAGCATGGACCCGTCTGTAGGCATCTGTaGGCACCCACCAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: CLLACLFFTMINLCEHGPVCRHL*APTREM
Trigger: CATCTCCCTGGTGGGTGCCCACAGATGCCTACAGAC...GGGTCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWSRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAATCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: EGPPRDSESCFPSSIFLESSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKSRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CCA 90 bp CAACTTGGACAAGAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTGCAAAGTCTGTAGGCATCTGTaGGCACCCACCAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: QLGQETLWQQFSKSPKCKVCRHL*APTREM
Trigger: CATCTCCCTGGTGGGTGCCCACAGATGCCTACAGAC...TTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 72 bp CAGCTTCCTCTGAGCCTTCTGTGCTTGTTTGTTTGTTaGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: QLPLSLLCLFVC*LACLLACLLAC
Trigger: GCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAAGCACAGAAGGCTCAGAGGAAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR TCA 90 bp TGCTTGCTTGCTTGCTTGTTTTTCACCATGATTAACCTCTGTGAGCATGGACCCTCCTCAGGGTATATATaGAAGGGTTCAAGACGGGTG +
Preference number: 4 (lower is better)
Translates to: CLLACLFFTMINLCEHGPSSGYI*KGSRRV
Trigger: CACCCGTCTTGAACCCTTTCATATATACCCTGAGGA...GGGTCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR GCA 90 bp ATTGGAGGTTTAGAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTAGCAGGAACTATGATTaGAGAAAAGCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: IGGLEGPPRDSESCFPSSSRNYD*RKATQP
Trigger: TGGCTGTGTGGCTTTTCTGCAATCATAGTTCCTGCT...ACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTCTAAACCTCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 72 bp TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTaGTTTTTCACCATGATTAACCTCTGTGAGCATGGA +
Preference number: 4 (lower is better)
Translates to: LLACLLACLLAC*FFTMINLCEHG
Trigger: TCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
3UTR CAA 72 bp TTGTTTGTTTGTTTGCTTGCTTGCTTGCTTGCTTGCTaGCTTGCTTGCTTGTTTTTCACCATGATTAACCTC +
Preference number: 4 (lower is better)
Translates to: LFVCLLACLLAC*LACLFFTMINL
Trigger: GAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAACAAACAAACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCCAATGCGCATGCTCCTaGGCCCCGGGAAGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAQCACS*APGSPA
Trigger: TGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTG...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCCAATGCGCATGCTCCTaGGCCCCGGGAAGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: AQSAERMFSIHEALASIPQCACS*APGSPA
Trigger: TGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTG...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GGTCCCCGGGGACTGAGAGATCAGGGTGGACACAGGCACTATTGGTTGTCCAGACAATGCGCATGCTCCTaGGCCCCGGGAAGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: GPRGLRDQGGHRHYWLSRQCACS*APGSPA
Trigger: TGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTG...TCTGGACAACCAATAGTGCCTGTGTCCACCCTGATCTCTCAGTCCCCGGGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTC +
Preference number: 5 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVSTVTA*VRSKEL
Trigger: GAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCT...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGTCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GGAGAATTACAACCAGAATCTGAGGCCACACAGGCATCCAGGGCCCCCGCTCCCTCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: GELQPESEATQASRAPAPSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...GGGAGCGGGGGCCCTGGATGCCTGTGTGGCCTCAGATTCTGGTTGTAATTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GGTCCCCGGGGACTGAGAGATCAGGGTGGACACAGGCACTATTGGTTGTCCAGAAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTC +
Preference number: 5 (lower is better)
Translates to: GPRGLRDQGGHRHYWLSRSTVTA*VRSKEL
Trigger: GAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCT...TCTGGACAACCAATAGTGCCTGTGTCCACCCTGATCTCTCAGTCCCCGGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTC +
Preference number: 5 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCSTVTA*VRSKEL
Trigger: GAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCT...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS CCA 90 bp ATACATGACCAGGAAAAGCAGGAAGAGCCCAATGCGCATGCTCCTTaGCCCCGGGAAGCCCAGCAAGATGAATGGTCCTGGTGTGGACAG +
Preference number: 5 (lower is better)
Translates to: IHDQEKQEEPNAHAP*PREAQQDEWSWCGQ
Trigger: CTGTCCACACCAGGACCATTCATCTTGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGCTTTTCCTGGTCATGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAACAATGCGCATGCTCCTaGGCCCCGGGAAGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: EGPPRDSESCFPSSIFLEQCACS*APGSPA
Trigger: TGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTG...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGTGGGCAGAGGGAATCTaGATGATGGTAGTGATGATG +
Preference number: 5 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVWAEGI*MMVVMM
Trigger: CATCATCACTACCATCATCAAGATTCCCTCTGCCCA...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp CCAGCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: PANDSPAEQPLTGDAHRAGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...GGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCCAATGACAGTCCTGCAGAGCAGCCTCTGACAGGAGATGCACACAGGGCCGTGGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: ANDSPAEQPLTGDAHRAVGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...CACGGCCCTGTGTGCATCTCCTGTCAGAGGCTGCTCTGCAGGACTGTCATTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp TGCTTGCTTGCTTGCTTGTTTTTCACCATGATTAACCTCTGTGAGCATGGACCCCAATGCGCATGCTCCTaGGCCCCGGGAAGCCCAGCA +
Preference number: 5 (lower is better)
Translates to: CLLACLFFTMINLCEHGPQCACS*APGSPA
Trigger: TGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTG...GGGTCCATGCTCACAGAGGTTAATCATGGTGAAAAACAAGCAAGCAAGCAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCTGGGCAGAGGGAATCTaGATGATGGTAGTGATGATG +
Preference number: 5 (lower is better)
Translates to: AQSAERMFSIHEALASIPWAEGI*MMVVMM
Trigger: CATCATCACTACCATCATCAAGATTCCCTCTGCCCA...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp CCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATCAGTGCCATTTGGGAGGTAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTC +
Preference number: 5 (lower is better)
Translates to: PGFHPQNHKTEHQCHLGGSTVTA*VRSKEL
Trigger: GAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCT...ACCTCCCAAATGGCACTGATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp ATTCTAGGTGGGTGGCATCTTCACCTGTGGCCCATCCCAGGTAGGGGTCACTGCGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: ILGGWHLHLWPIPGRGHCGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...GCAGTGACCCCTACCTGGGATGGGCCACAGGTGAAGATGCCACCCACCTAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GCTCAGTCAGCTGAGCGCATGTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: AQSAERMFSIHEALASIPGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...GGGGATGGAAGCCAGGGCTTCGTGAATGCTGAACATGCGCTCAGCTGACTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GTAGGGGTCACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGTCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: VGVTAERSFYVLLGIPLWSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...CCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTGACCCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp AAAGTCCGAGTGGATCATCTAGGCCTCAGACATGGGCTGGACAGAACAGAGAAGAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTC +
Preference number: 5 (lower is better)
Translates to: KVRVDHLGLRHGLDRTEKSTVTA*VRSKEL
Trigger: GAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCT...CTTCTCTGTTCTGTCCAGCCCATGTCTGAGGCCTAGATGATCCACTCGGACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATTCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp CACTGCAGAGAGGAGCTTCTATGTCCTACTTGGGATTCCACTCTGGAAGACGGTTCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: HCREELLCPTWDSTLEDGSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...ACCGTCTTCCAGAGTGGAATCCCAAGTAGGACATAGAAGCTCCTCTCTGCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GGGGTCTGGCCAGAACTGGCGCACAGCTTCTGGTATTTATATTGGAGGTTTAGATCACAGAAGAAGTGGTaGATGACACGTGAGCCGCAG +
Preference number: 5 (lower is better)
Translates to: GVWPELAHSFWYLYWRFRSQKKW*MTREPQ
Trigger: CTGCGGCTCACGTGTCATCAACCACTTCTTCTGTGA...TCTAAACCTCCAATATAAATACCAGAAGCTGTGCGCCAGTTCTGGCCAGACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GTTCAGCATTCACGAAGCCCTGGCTTCCATCCCCAGAACCACAAAACAGAGCATGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: VQHSRSPGFHPQNHKTEHGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...ATGCTCTGTTTTGTGGTTCTGGGGATGGAAGCCAGGGCTTCGTGAATGCTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAATGGGCAGAGGGAATCTaGATGATGGTAGTGATGATG +
Preference number: 5 (lower is better)
Translates to: EGPPRDSESCFPSSIFLEWAEGI*MMVVMM
Trigger: CATCATCACTACCATCATCAAGATTCCCTCTGCCCA...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp GAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTATCTTCCTGGAAGGTGTGACAATGGTATaGAGCACTGTGACAGCTTTG +
Preference number: 5 (lower is better)
Translates to: EGPPRDSESCFPSSIFLEGVTMV*STVTAL
Trigger: CAAAGCTGTCACAGTGCTCAATACCATTGTCACACC...TTCCAGGAAGATACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp ATTGGAGGTTTAGAGGGACCTCCTAGGGACTCAGAATCCTGTTTCCCTTCTAGTTGGGCAGAGGGAATCTaGATGATGGTAGTGATGATG +
Preference number: 5 (lower is better)
Translates to: IGGLEGPPRDSESCFPSSWAEGI*MMVVMM
Trigger: CATCATCACTACCATCATCAAGATTCCCTCTGCCCA...ACTAGAAGGGAAACAGGATTCTGAGTCCCTAGGAGGTCCCTCTAAACCTCCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS-3UTR CAA 90 bp CAACTTGGACAAGAGACACTCTGGCAACAATTCTCAAAAAGCCCAAAGTGCAAATGGGCAGAGGGAATCTaGATGATGGTAGTGATGATG +
Preference number: 5 (lower is better)
Translates to: QLGQETLWQQFSKSPKCKWAEGI*MMVVMM
Trigger: CATCATCACTACCATCATCAAGATTCCCTCTGCCCA...TTTGCACTTTGGGCTTTTTGAGAATTGTTGCCAGAGTGTCTCTTGTCCAAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS TCA 72 bp TGCGCATGCTCCTTGGCCCCGGGAAGCCCAGCAAGATaGATGGTCCTGGTGTGGACAGGTTCTGGCCAGTAC +
Preference number: 6 (lower is better)
Translates to: CACSLAPGSPAR*MVLVWTGSGQY
Trigger: GTACTGGCCAGAACCTGTCCACACCAGGACCATTCATCTTGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS CCA 72 bp CCTTGGCCCCGGGAAGCCCAGCAAGATGAATGGTCCTaGTGTGGACAGGTTCTGGCCAGTACTCCAAGCCAT +
Preference number: 6 (lower is better)
Translates to: PWPREAQQDEWS*CGQVLASTPSH
Trigger: ATGGCTTGGAGTACTGGCCAGAACCTGTCCACACCAGGACCATTCATCTTGCTGGGCTTCCCGGGGCCAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS CCA 72 bp CATGCTCCTTGGCCCCGGGAAGCCCAGCAAGATGAATaGTCCTGGTGTGGACAGGTTCTGGCCAGTACTCCA +
Preference number: 6 (lower is better)
Translates to: HAPWPREAQQDE*SWCGQVLASTP
Trigger: TGGAGTACTGGCCAGAACCTGTCCACACCAGGACCATTCATCTTGCTGGGCTTCCCGGGGCCAAGGAGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS CCA 72 bp CAGGAAAAGCAGGAAGAGCCCAATGCGCATGCTCCTTaGCCCCGGGAAGCCCAGCAAGATGAATGGTCCTGG +
Preference number: 6 (lower is better)
Translates to: QEKQEEPNAHAP*PREAQQDEWSW
Trigger: CCAGGACCATTCATCTTGCTGGGCTTCCCGGGGCCAAGGAGCATGCGCATTGGGCTCTTCCTGCTTTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS CAA 90 bp GGGTTCAAGACGGGTGTGACAATGGTATTGAGCACTGTGACAGCTTaGGTGAGGTCCAAGGAGCTCTCTACCGAGGTCCTCACGTGCAAG +
Preference number: 6 (lower is better)
Translates to: GFKTGVTMVLSTVTA*VRSKELSTEVLTCK
Trigger: CTTGCACGTGAGGACCTCGGTAGAGAGCTCCTTGGACCTCACCAAAGCTGTCACAGTGCTCAATACCATTGTCACACCCGTCTTGAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2
CDS GCA 72 bp TACCAAAAGACACTAGCTCTACCACCTGCGTGTCCGTaGAGGAAAGCACTATCCAGGGCGAAATGTCACAGA +
Preference number: 6 (lower is better)
Translates to: YQKTLALPPACP*RKALSRAKCHR
Trigger: TCTGTGACATTTCGCCCTGGATAGTGCTTTCCTGCACGGACACGCAGGTGGTAGAGCTAGTGTCTTTTGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055890.6
ENSMUST00000209314.3
ENSMUST00000213953.2
ENSMUST00000214272.2
ENSMUST00000215785.2
ENSMUST00000216023.2