Pregenerated sensors for OLFR50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000111021Ensembl transcript IDs: ENSMUST00000112950.3, ENSMUST00000216753.3, ENSMUST00000217041.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAGGGGTGCTGCTTAGTGACTTACTCATCATGTCTTTCTCACCATaGATTCCTATAGAAGCCAGGACCACCAACTCAAGGGTGGTCCCA | + |
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Preference number: 1 (lower is better) Translates to: EGVLLSDLLIMSFSP*IPIEARTTNSRVVP Trigger: TGGGACCACCCTTGAGTTGGTGGTCCTGGCTTCTATAGGAATGCATGGTGAGAAAGACATGATGAGTAAGTCACTAAGCAGCACCCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR TCA 90 bp | TCCAATAAGATGGTTTATTTGAGAATAGACACTTTCCAGCAAACCTaGTACCTTAAGTCTCAGCTCCAGGGCCCACACAATAAAAGGACA | + |
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Preference number: 1 (lower is better) Translates to: SNKMVYLRIDTFQQT*YLKSQLQGPHNKRT Trigger: TGTCCTTTTATTGTGTGGGCCCTGGAGCTGAGACTTAAGGTATCAGGTTTGCTGGAAAGTGTCTATTCTCAAATAAACCATCTTATTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR GCA 90 bp | TTTTACTCTCTTGATCTTGTAAGGCCTTGTATTGGTAACCATAGCTaGTGTGAGTTCTTGTGTGCAATAGCCACATCATGTTCAGAGTAT | + |
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Preference number: 1 (lower is better) Translates to: FYSLDLVRPCIGNHS*CEFLCAIATSCSEY Trigger: ATACTCTGAACATGATGTGGCTATTGCACACAAGAACTCACAGCAGCTATGGTTACCAATACAAGGCCTTACAAGATCAAGAGAGTAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGACCACCAACTCAAGGGTGGTCCCACCAACAGTGGGCTGGACCTTCCCAAGGCAAGCAGCACAGTaGCCAAACATAATAATTATG | + |
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Preference number: 2 (lower is better) Translates to: ARTTNSRVVPPTVGWTFPRQAAQ*PNIIIM Trigger: CATAATTATTATGTTTGGCCACTGTGCTGCTTGCCT...TGGGAAGGTCCAGCCCACTGTTGGTGGGACCACCCTTGAGTTGGTGGTCCTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR CCA 90 bp | CTATTAGACAATAACACCATTGTCCTGGTTTGGGTTTCTATTCCTGTGATAAGTTGGTCCCACCAACAGTaGGCTGGACCTTCCCACATC | + |
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Preference number: 2 (lower is better) Translates to: LLDNNTIVLVWVSIPVISWSHQQ*AGPSHI Trigger: GATGTGGGAAGGTCCAGCCCACTGTTGGTGGGACCA...ACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR TCA 90 bp | CCCTTTTGTGTATGGACATGGGATCATCTAGTGGGACATATGGAACCTTTTAATACTCCACTACATCTTTaGAGACTTCTGTCCCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: PFCVWTWDHLVGHMEPFNTPLHL*RLLSPV Trigger: TACTGGGGACAGAAGTCTTCAAAGATGTAGTGGAGT...ATTAAAAGGTTCCATATGTCCCACTAGATGATCCCATGTCCATACACAAAAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CAA 90 bp | TCACTCCACTACATCTTTGAAGACTTCTGTCCCCAGTATTCTACTTaGTTACTTTCACTTCACCTATATTCTAATTTCCTAGTGCACCCT | + |
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Preference number: 2 (lower is better) Translates to: SLHYIFEDFCPQYST*LLSLHLYSNFLVHP Trigger: AGGGTGCACTAGGAAATTAGAATATAGGTGAAGTGAAAGTAACAAAGTAGAATACTGGGGACAGAAGTCTTCAAAGATGTAGTGGAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR TCA 90 bp | CTATTAGACAATAACACCATTGTCCTGGTTTGGGTTTCTATTCCTGTGATAAGTAACCTAAAGACTCAATaGAAAGCACCAAGTCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: LLDNNTIVLVWVSIPVISNLKTQ*KAPSQS Trigger: GCTTTGACTTGGTGCTTTTCATTGAGTCTTTAGGTT...ACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR CCA 90 bp | CTGGTTTGGGTTTCTATTCCTGTGATAAGTCCAAGACCAATAACAACTTGGGAAGAGGCATTTGTCTTTTaGAATTTGGGTAACCTAATT | + |
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Preference number: 2 (lower is better) Translates to: LVWVSIPVISPRPITTWEEAFVF*NLGNLI Trigger: AATTAGGTTACCCAAATTCCAAAAGACAAATGCCTC...TTCCCAAGTTGTTATTGGTCTTGGACTTATCACAGGAATAGAAACCCAAACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCCCCAGTATTCTACTTTGTTACTTTCACTTCACCTATATTCTAATTTCCACAGCTAATCAATATTaGATCGTGCATATGTACCAC | + |
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Preference number: 2 (lower is better) Translates to: SVPSILLCYFHFTYILISTANQY*IVHMYH Trigger: GTGGTACATATGCACGATGCAATATTGATTAGCTGT...GGAAATTAGAATATAGGTGAAGTGAAAGTAACAAAGTAGAATACTGGGGACAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR GCA 90 bp | TCTGTCCCCAGTATTCTACTTTGTTACTTTCACTTCACCTATATTCTAATTTCCATCAATATTGCATCGTaGATATGTACCACCTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: SVPSILLCYFHFTYILISINIAS*ICTTFF Trigger: AAAGAAGGTGGTACATATGCACGATGCAATATTGAT...GGAAATTAGAATATAGGTGAAGTGAAAGTAACAAAGTAGAATACTGGGGACAGA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | CCAGGACCACCAACTCAAGGGTGGTCCCACCAACAGTaGGCTGGACCTTCCCACATCACTAATGAATCAAAA | + |
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Preference number: 3 (lower is better) Translates to: PGPPTQGWSHQQ*AGPSHITNESK Trigger: TTTTGATTCATTAGTGATGTGGGAAGGTCCAGCCCACTGTTGGTGGGACCACCCTTGAGTTGGTGGTCCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR GCA 72 bp | CTGCTTAGTGACTTACTCATCATGTCTTTCTCACCATaGATTCCTATAGAAGCCAGGACCACCAACTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: LLSDLLIMSFSP*IPIEARTTNSR Trigger: CCTTGAGTTGGTGGTCCTGGCTTCTATAGGAATGCATGGTGAGAAAGACATGATGAGTAAGTCACTAAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR TCA 72 bp | ATGGTTTATTTGAGAATAGACACTTTCCAGCAAACCTaGTACCTTAAGTCTCAGCTCCAGGGCCCACACAAT | + |
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Preference number: 3 (lower is better) Translates to: MVYLRIDTFQQT*YLKSQLQGPHN Trigger: ATTGTGTGGGCCCTGGAGCTGAGACTTAAGGTATCAGGTTTGCTGGAAAGTGTCTATTCTCAAATAAACCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR GCA 72 bp | CTTGATCTTGTAAGGCCTTGTATTGGTAACCATAGCTaGTGTGAGTTCTTGTGTGCAATAGCCACATCATGT | + |
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Preference number: 3 (lower is better) Translates to: LDLVRPCIGNHS*CEFLCAIATSC Trigger: ACATGATGTGGCTATTGCACACAAGAACTCACAGCAGCTATGGTTACCAATACAAGGCCTTACAAGATCAAG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR-3UTR CAA 90 bp | CCAATAACAACTTGGGAAGGAAAGGGCCTATTTTATCTTATACTTCCAGGTAACCACTCCACTACATCTTaGAAGACTTCTGTCCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: PITTWEGKGLFYLILPGNHSTTS*KTSVPS Trigger: ACTGGGGACAGAAGTCTTCAAAGATGTAGTGGAGTG...GTTACCTGGAAGTATAAGATAAAATAGGCCCTTTCCTTCCCAAGTTGTTATTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | AACCCACTGAGATCAAATAATGTTCCCTTTTGTGTATaGACATGGGATCATCTAGTGGGACATATGGAACCT | + |
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Preference number: 3 (lower is better) Translates to: NPLRSNNVPFCV*TWDHLVGHMEP Trigger: AGGTTCCATATGTCCCACTAGATGATCCCATGTCCATACACAAAAGGGAACATTATTTGATCTCAGTGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | CTGAGATCAAATAATGTTCCCTTTTGTGTATGGACATaGGATCATCTAGTGGGACATATGGAACCTTTTAAT | + |
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Preference number: 3 (lower is better) Translates to: LRSNNVPFCVWT*DHLVGHMEPFN Trigger: ATTAAAAGGTTCCATATGTCCCACTAGATGATCCCATGTCCATACACAAAAGGGAACATTATTTGATCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | TCTATTCCTGTGATAAGTCCAAGACCAATAACAACTTaGGAAGGAAAGGGCCTATTTTATCTTATACTTCCA | + |
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Preference number: 3 (lower is better) Translates to: SIPVISPRPITT*EGKGLFYLILP Trigger: TGGAAGTATAAGATAAAATAGGCCCTTTCCTTCCCAAGTTGTTATTGGTCTTGGACTTATCACAGGAATAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | AGAAGTCTATTAGACAATAACACCATTGTCCTGGTTTaGGTTTCTATTCCTGTGATAAGTCCAAGACCAATA | + |
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Preference number: 3 (lower is better) Translates to: RSLLDNNTIVLV*VSIPVISPRPI Trigger: TATTGGTCTTGGACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAGACTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR TCA 72 bp | TCCCTAGATCTTTATACCCTTCTACTTTCTGCCATATaGACATATAGAAGGAAGGCAGTGATTAACATTTGT | + |
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Preference number: 3 (lower is better) Translates to: SLDLYTLLLSAI*TYRRKAVINIC Trigger: ACAAATGTTAATCACTGCCTTCCTTCTATATGTTCATATGGCAGAAAGTAGAAGGGTATAAAGATCTAGGGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CCA 72 bp | AACTCATATGAAAGATACCATGAGGCATTTGTCTTTTaGAATTTGGGTAACCTAATTCAGTACAGTTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: NSYERYHEAFVF*NLGNLIQYSFL Trigger: CAAGAAACTGTACTGAATTAGGTTACCCAAATTCCAAAAGACAAATGCCTCATGGTATCTTTCATATGAGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR TCA 90 bp | GCCAGGACCACCAACTCAAGGGTGGTCCCACCAACAGTGGGCTGGACCTTCCCAAACACAGTCTCCTGCTaGGTGTCTTTCTCAATGCTC | + |
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Preference number: 4 (lower is better) Translates to: ARTTNSRVVPPTVGWTFPNTVSC*VSFSML Trigger: GAGCATTGAGAAAGACACTCAGCAGGAGACTGTGTT...TGGGAAGGTCCAGCCCACTGTTGGTGGGACCACCCTTGAGTTGGTGGTCCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CAA 72 bp | TTAATTAAGATTCCGTCTTCCCAGAAAAGTCTGGGTTaGTGTCAAGTTGACAAAAGGCAAGCAGCACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LIKIPSSQKSLG*CQVDKRQAAQW Trigger: CCACTGTGCTGCTTGCCTTTTGTCAACTTGACACAAACCCAGACTTTTCTGGGAAGACGGAATCTTAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR TCA 90 bp | CTCAATGAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAAACACAGTCTCCTGCTaGGTGTCTTTCTCAATGCTC | + |
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Preference number: 4 (lower is better) Translates to: LNEKHQVKALCTGLRSSQNTVSC*VSFSML Trigger: GAGCATTGAGAAAGACACTCAGCAGGAGACTGTGTT...TTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTCATTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR CCA 90 bp | CTATTAGACAATAACACCATTGTCCTGGTTTGGGTTTCTATTCCTGTGATAAGTACCCAGCATGTGAGATaGATTGGCTATGTGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LLDNNTIVLVWVSIPVISTQHVR*IGYVSA Trigger: TGCTGACACATAGCCAATCCATCTCACATGCTGGGT...ACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR CCA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAAACCCAGCATGTGAGATaGATTGGCTATGTGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: EKHQVKALCTGLRSSQIQTQHVR*IGYVSA Trigger: TGCTGACACATAGCCAATCCATCTCACATGCTGGGT...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR CCA 90 bp | CTCAATGAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAACAGGATGCATATGAATaGTACAGTGATGACCACCAC | + |
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Preference number: 4 (lower is better) Translates to: LNEKHQVKALCTGLRSSQQDAYE*YSDDHH Trigger: GTGGTGGTCATCACTGTACCATTCATATGCATCCTG...TTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTCATTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR TCA 90 bp | CTATTAGACAATAACACCATTGTCCTGGTTTGGGTTTCTATTCCTGTGATAAGTGAAACTACACAGAGATaGGAACCACATGTGGACAAG | + |
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Preference number: 4 (lower is better) Translates to: LLDNNTIVLVWVSIPVISETTQR*EPHVDK Trigger: CTTGTCCACATGTGGTTCTCATCTCTGTGTAGTTTC...ACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR TCA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAAGAAACTACACAGAGATaGGAACCACATGTGGACAAG | + |
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Preference number: 4 (lower is better) Translates to: EKHQVKALCTGLRSSQIQETTQR*EPHVDK Trigger: CTTGTCCACATGTGGTTCTCATCTCTGTGTAGTTTC...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR CCA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAACAGGATGCATATGAATaGTACAGTGATGACCACCAC | + |
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Preference number: 4 (lower is better) Translates to: EKHQVKALCTGLRSSQIQQDAYE*YSDDHH Trigger: GTGGTGGTCATCACTGTACCATTCATATGCATCCTG...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR GCA 90 bp | CTATTAGACAATAACACCATTGTCCTGGTTTGGGTTTCTATTCCTGTGATAAGTGCAAAGAGAAGAGTATaGACAAGGCCATTAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: LLDNNTIVLVWVSIPVISAKRRV*TRPLEE Trigger: CTCTTCTAATGGCCTTGTGCATACTCTTCTCTTTGC...ACTTATCACAGGAATAGAAACCCAAACCAGGACAATGGTGTTATTGTCTAATAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR GCA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAAGCAAAGAGAAGAGTATaGACAAGGCCATTAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: EKHQVKALCTGLRSSQIQAKRRV*TRPLEE Trigger: CTCTTCTAATGGCCTTGTGCATACTCTTCTCTTTGC...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR GCA 90 bp | CTCAATGAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAGAGTGTCTTTCTCAATaGTCCATTTATATCCCGATT | + |
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Preference number: 4 (lower is better) Translates to: LNEKHQVKALCTGLRSSQECLSQ*SIYIPI Trigger: AATCGGGATATAAATGGAGCATTGAGAAAGACACTC...TTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTCATTGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR GCA 90 bp | TTCCTCTATCACACATCCTTGGTTTTAATGAACATATTCCCACCTCTCTTTTCAGAGTGTCTTTCTCAATaGTCCATTTATATCCCGATT | + |
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Preference number: 4 (lower is better) Translates to: FLYHTSLVLMNIFPPLFSECLSQ*SIYIPI Trigger: AATCGGGATATAAATGGAGCATTGAGAAAGACACTC...TGAAAAGAGAGGTGGGAATATGTTCATTAAAACCAAGGATGTGTGATAGAGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| 3UTR CAA 72 bp | TATGAAAGATACCATGAGGCATTTGTCTTTTGGAATTaGGGTAACCTAATTCAGTACAGTTTCTTGTACACT | + |
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Preference number: 4 (lower is better) Translates to: YERYHEAFVFWN*GNLIQYSFLYT Trigger: AGTGTACAAGAAACTGTACTGAATTAGGTTACCCAAATTCCAAAAGACAAATGCCTCATGGTATCTTTCATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR CAA 90 bp | CCACCAACTCAAGGGTGGTCCCACCAACAGTGGGCTGGACCTTCCCACATCACTGGCAAAGTACACAGCTaGATCCTCTGGCTGAATGGG | + |
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Preference number: 5 (lower is better) Translates to: PPTQGWSHQQWAGPSHITGKVHS*ILWLNG Trigger: CCCATTCAGCCAGAGGATCAAGCTGTGTACTTTGCC...AGTGATGTGGGAAGGTCCAGCCCACTGTTGGTGGGACCACCCTTGAGTTGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR CAA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAAGGCAAAGTACACAGCTaGATCCTCTGGCTGAATGGG | + |
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Preference number: 5 (lower is better) Translates to: EKHQVKALCTGLRSSQIQGKVHS*ILWLNG Trigger: CCCATTCAGCCAGAGGATCAAGCTGTGTACTTTGCC...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR CAA 90 bp | CCCTTTTGTGTATGGACATGGGATCATCTAGTGGGACATATGGAACCTTTTAATCATGTGGACAAGGCTTaGCAGATACCCTTGATGGAT | + |
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Preference number: 5 (lower is better) Translates to: PFCVWTWDHLVGHMEPFNHVDKA*QIPLMD Trigger: ATCCATCAAGGGTATCTGCAAAGCCTTGTCCACATG...ATTAAAAGGTTCCATATGTCCCACTAGATGATCCCATGTCCATACACAAAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216753.3 |
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| CDS-3UTR CAA 90 bp | GAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAATACAACATGTGGACAAGGCTTaGCAGATACCCTTGATGGAT | + |
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Preference number: 5 (lower is better) Translates to: EKHQVKALCTGLRSSQIQHVDKA*QIPLMD Trigger: ATCCATCAAGGGTATCTGCAAAGCCTTGTCCACATG...TTGTATTTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS-3UTR CAA 90 bp | CTCAATGAAAAGCACCAAGTCAAAGCATTATGTACAGGACTGAGAAGTTCTCAAAAATGGTGGACAGTGTaGTCTCTAAAAAGAGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LNEKHQVKALCTGLRSSQKWWTV*SLKRER Trigger: TCTCTCTCTTTTTAGAGACAACACTGTCCACCATTT...TTGAGAACTTCTCAGTCCTGTACATAATGCTTTGACTTGGTGCTTTTCATTGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000216753.3 ENSMUST00000217041.3 |
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| CDS TCA 72 bp | CAGCATATTCATGAGCATCTTTGGAGCTGTGACAGATaGGAAAGAGATGTCCGTGAAGGCCAAGTGACTGAG | + |
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Preference number: 6 (lower is better) Translates to: QHIHEHLWSCDR*ERDVREGQVTE Trigger: CTCAGTCACTTGGCCTTCACGGACATCTCTTTCTCATCTGTCACAGCTCCAAAGATGCTCATGAATATGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112950.3 ENSMUST00000216753.3 ENSMUST00000217041.3 |
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