Pregenerated sensors for OLFR48 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075072Ensembl transcript IDs: ENSMUST00000099762.2, ENSMUST00000214428.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTGTCCTGGCCCCTTTCTAGTTTCCTGGAATCTACTCATGCTCACTCCCATGCACAGAGCATACATTCATaGTCTGTGAGCACACATTCA | + |
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Preference number: 2 (lower is better) Translates to: LSWPLSSFLESTHAHSHAQSIHS*SVSTHS Trigger: TGAATGTGTGCTCACAGAGCATGAATGTATGCTCTG...TGCATGGGAGTGAGCATGAGTAGATTCCAGGAAACTAGAAAGGGGCCAGGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR-3UTR CCA 90 bp | AATCAGAAGCTAAGCCATGCATATGAGAGAAAACACCTGACGCTTGTTTTTCAGCAGGAGAAAGTAAATTaGTGTGGCACAGAAGACACC | + |
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Preference number: 2 (lower is better) Translates to: NQKLSHAYERKHLTLVFQQEKVN*CGTEDT Trigger: GGTGTCTTCTGTGCCACACCAATTTACTTTCTCCTG...CTGAAAAACAAGCGTCAGGTGTTTTCTCTCATATGCATGGCTTAGCTTCTGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR CAA 90 bp | AACAGATATAATCAGTCAAGGACAGTCCTCAATGTTATAACCCCTTaGAGGAGTCGAATGTCACAAGGGTCACCTAAGAACATCAGAATT | + |
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Preference number: 2 (lower is better) Translates to: NRYNQSRTVLNVITP*RSRMSQGSPKNIRI Trigger: AATTCTGATGTTCTTAGGTGACCCTTGTGACATTCGACTCCTCAAAGGGGTTATAACATTGAGGACTGTCCTTGACTGATTATATCTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR-3UTR GCA 90 bp | GTAAGTGGTCCTCGAATCAGAAAAGCAACACCCATTCAGAGCATACATTCATGCAATTGTCATCAGTTTTaGTATGAAAAGTGTAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: VSGPRIRKATPIQSIHSCNCHQF*YEKCSP Trigger: TGGGCTACACTTTTCATAGCAAAACTGATGACAATT...GCATGAATGTATGCTCTGAATGGGTGTTGCTTTTCTGATTCGAGGACCACTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR-3UTR CCA 90 bp | CTATATATTGTGGGTGAACCCCTTACATCATGCCAGATACAGAGTATACAAATCTCAGCAAGTTATCCCTaGAAGTTCACTCCACTTTGT | + |
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Preference number: 2 (lower is better) Translates to: LYIVGEPLTSCQIQSIQISASYP*KFTPLC Trigger: ACAAAGTGGAGTGAACTTCCAGGGATAACTTGCTGA...GATTTGTATACTCTGTATCTGGCATGATGTAAGGGGTTCACCCACAATATATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR CCA 72 bp | GCCTACTCTGCCATATGTCCTTCAGCAAGTTATCCCTaGAAGTTCACTCCACTTTGTGATTCTAACCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: AYSAICPSASYP*KFTPLCDSNPP Trigger: AGGAGGGTTAGAATCACAAAGTGGAGTGAACTTCCAGGGATAACTTGCTGAAGGACATATGGCAGAGTAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR GCA 72 bp | TCGGCACTAACAACACATTCTCCAGTAAGCCTACTCTaGCATATGTCCTTCAGCAAGTTATCCCTGGAAGTT | + |
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Preference number: 3 (lower is better) Translates to: SALTTHSPVSLL*HMSFSKLSLEV Trigger: AACTTCCAGGGATAACTTGCTGAAGGACATATGGCAGAGTAGGCTTACTGGAGAATGTGTTGTTAGTGCCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR TCA 72 bp | AAGCAACACCCATTCAGAGCATACATTCATGCTCTGTaGGCACACATTCATGATCTCGGCACTAACAACACA | + |
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Preference number: 3 (lower is better) Translates to: KQHPFRAYIHAL*AHIHDLGTNNT Trigger: TGTGTTGTTAGTGCCGAGATCATGAATGTGTGCTCACAGAGCATGAATGTATGCTCTGAATGGGTGTTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR-3UTR CAA 90 bp | AATCAGAAGCTAAGCCATGCATATGAGAGAAAACACCTGACGCTTGTTTTTCAGAAAACTGTAAGTGACTaGGGAGGTGATTGTCTATGT | + |
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Preference number: 3 (lower is better) Translates to: NQKLSHAYERKHLTLVFQKTVSD*GGDCLC Trigger: ACATAGACAATCACCTCCCAAGTCACTTACAGTTTT...CTGAAAAACAAGCGTCAGGTGTTTTCTCTCATATGCATGGCTTAGCTTCTGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR CCA 72 bp | CATTTGCTTCAATACATCCAGAAAAATATACCACACTaGAAGATATGTCTGTCAACAATAGCCTTTCAGCTT | + |
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Preference number: 3 (lower is better) Translates to: HLLQYIQKNIPH*KICLSTIAFQL Trigger: AAGCTGAAAGGCTATTGTTGACAGACATATCTTCCAGTGTGGTATATTTTTCTGGATGTATTGAAGCAAATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR TCA 90 bp | CTGTCCTGGCCCCTTTCTAGTTTCCTGGAATCTACTCATGCTCACTCCCATGCATGCTCGGCAAAGACTTaGGTCATGCAGCCACTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LSWPLSSFLESTHAHSHACSAKT*VMQPLK Trigger: TTTCAGTGGCTGCATGACTCAAGTCTTTGCCGAGCA...TGCATGGGAGTGAGCATGAGTAGATTCCAGGAAACTAGAAAGGGGCCAGGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR TCA 90 bp | GGCACTAACAACACATTCTCCAGTAAGCCTACTCTGCCATATGTCCTTCAGCAAAAGGCAGCCAGACTGTaGAGAGGATCTGAATGGTCG | + |
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Preference number: 4 (lower is better) Translates to: GTNNTFSSKPTLPYVLQQKAARL*RGSEWS Trigger: CGACCATTCAGATCCTCTTCACAGTCTGGCTGCCTT...TTGCTGAAGGACATATGGCAGAGTAGGCTTACTGGAGAATGTGTTGTTAGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR TCA 90 bp | ATCTCGGCACTAACAACACATTCTCCAGTAAGCCTACTCTGCCATATGTCCTTCGAGTCATGCAGCCACTaGAAGAAATGGTTTTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: ISALTTHSPVSLLCHMSFESCSH*KKWFSA Trigger: TGCGGAAAACCATTTCTTTCAGTGGCTGCATGACTC...GAAGGACATATGGCAGAGTAGGCTTACTGGAGAATGTGTTGTTAGTGCCGAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR TCA 90 bp | GTAAGTGGTCCTCGAATCAGAAAAGCAACACCCATTCAGAGCATACATTCATGCCTTCCCTCCTTGCTGTaGGATTTTAGAGCATCGAGG | + |
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Preference number: 4 (lower is better) Translates to: VSGPRIRKATPIQSIHSCLPSLL*DFRASR Trigger: CCTCGATGCTCTAAAATCTCACAGCAAGGAGGGAAG...GCATGAATGTATGCTCTGAATGGGTGTTGCTTTTCTGATTCGAGGACCACTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| 3UTR CAA 72 bp | AATCAGTCAAGGACAGTCCTCAATGTTATAACCCCTTaGAGGAGTCGAATGTCACAAGGGTCACCTAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: NQSRTVLNVITP*RSRMSQGSPKN Trigger: GTTCTTAGGTGACCCTTGTGACATTCGACTCCTCAAAGGGGTTATAACATTGAGGACTGTCCTTGACTGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR TCA 90 bp | ATCTCGGCACTAACAACACATTCTCCAGTAAGCCTACTCTGCCATATGTCCTTCTTAGAGCATCGAGGATaGCTATATAAGAGATCATCA | + |
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Preference number: 4 (lower is better) Translates to: ISALTTHSPVSLLCHMSFLEHRG*LYKRSS Trigger: TGATGATCTCTTATATAGTCATCCTCGATGCTCTAA...GAAGGACATATGGCAGAGTAGGCTTACTGGAGAATGTGTTGTTAGTGCCGAGAT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS-3UTR CAA 90 bp | ATCTCGGCACTAACAACACATTCTCCAGTAAGCCTACTCTGCCATATGTCCTTCACAAAGAGACCCAGGTaGTGTGTGTCCATACAAACA | + |
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Preference number: 5 (lower is better) Translates to: ISALTTHSPVSLLCHMSFTKRPR*CVSIQT Trigger: TGTTTGTATGGACACACACAACCTGGGTCTCTTTGT...GAAGGACATATGGCAGAGTAGGCTTACTGGAGAATGTGTTGTTAGTGCCGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214428.3 |
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| CDS TCA 90 bp | GTTGCCAGCCAAGGTGAGCAGATAGACAATGAAAAATACGACAAATaGAAATATCTGAAGCTCCATGTTCTGAGTCAAGCCCACAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: VASQGEQIDNEKYDK*KYLKLHVLSQAHKD Trigger: ATCCTTGTGGGCTTGACTCAGAACATGGAGCTTCAGATATTTTCATTTGTCGTATTTTTCATTGTCTATCTGCTCACCTTGGCTGGCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099762.2 ENSMUST00000214428.3 |
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| CDS TCA 72 bp | TTCCCTCCTTGCTGTGAGATTTTAGAGCATCGAGGATaGCTATATAAGAGATCATCAGAAGTAGAAAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: FPPCCEILEHRG*LYKRSSEVESL Trigger: TAAACTTTCTACTTCTGATGATCTCTTATATAGTCATCCTCGATGCTCTAAAATCTCACAGCAAGGAGGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099762.2 ENSMUST00000214428.3 |
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