Pregenerated sensors for OLFR427 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059371Ensembl transcript IDs: ENSMUST00000080831.4, ENSMUST00000213832.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAACCCATGGCTCCATCTGGATATGTAGTAGAGGACTGCCTTATCTaGCATCAGTGGAAGAGGAGCCCCTTAGTCCTCTGGGGACTCGAT | + |
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Preference number: 1 (lower is better) Translates to: KPMAPSGYVVEDCLI*HQWKRSPLVLWGLD Trigger: ATCGAGTCCCCAGAGGACTAAGGGGCTCCTCTTCCACTGATGTCAGATAAGGCAGTCCTCTACTACATATCCAGATGGAGCCATGGGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 90 bp | AGAAGGATATCTGGTGTCCAGCATGGGGAAACCCATGGCTCCATCTaGATATGTAGTAGAGGACTGCCTTATCTGACATCAGTGGAAGAG | + |
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Preference number: 1 (lower is better) Translates to: RRISGVQHGETHGSI*ICSRGLPYLTSVEE Trigger: CTCTTCCACTGATGTCAGATAAGGCAGTCCTCTACTACATATCCAGATGGAGCCATGGGTTTCCCCATGCTGGACACCAGATATCCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 90 bp | ACAGACTGGGAAAAGATCGCGCCAACCCTATACTCAACAGAGGTATaGTATAGAAAGCACATAAAAATTCAAGAAATTAGACACGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: TDWEKIAPTLYSTEV*YRKHIKIQEIRHAS Trigger: GCTGGCGTGTCTAATTTCTTGAATTTTTATGTGCTTTCTATACCATACCTCTGTTGAGTATAGGGTTGGCGCGATCTTTTCCCAGTCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR TCA 90 bp | CAAACTCCCATAGAAGAGATGACAATAGTAAACATTACAAGCCAGTaGCTATGTACCATAAAATCATGGCATTTTATCACTGTCCAGCTA | + |
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Preference number: 1 (lower is better) Translates to: QTPIEEMTIVNITSQ*LCTIKSWHFITVQL Trigger: TAGCTGGACAGTGATAAAATGCCATGATTTTATGGTACATAGTCACTGGCTTGTAATGTTTACTATTGTCATCTCTTCTATGGGAGTTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR TCA 90 bp | GTAGACTACCTCTGTATAAATAACCAATACACAGCTTGGTCTTCGTGTGGGACTTTCCCCTTGTCTAAATaGGGGGACTGTGAAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: VDYLCINNQYTAWSSCGTFPLSK*GDCEEK Trigger: TTTCTCTTCACAGTCCCCTCATTTAGACAAGGGGAA...AGTCCCACACGAAGACCAAGCTGTGTATTGGTTATTTATACAGAGGTAGTCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGAGCATATCTATCTTCTaGGAGCTCCAGCCAGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: SPGHILKRCSGIKMEQKVSISIF*ELQPAA Trigger: AGCTGCTGGCTGGAGCTCTCAGAAGATAGATATGCT...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTGTGTGGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAATTGGACAAACTCAGCTACAGAGAGTATaGCAACTGACTCCAGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: MCVACILPKVDVSSIGQTQLQRV*QLTPEK Trigger: TTTTTCTGGAGTCAGTTGCCATACTCTCTGTAGCTG...AGTTTGTCCAATTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTGTGTGGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAATTGGACAAACTCAAAAAGTGAGGAAATaGCCAACCAATGACTTGAGA | + |
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Preference number: 2 (lower is better) Translates to: MCVACILPKVDVSSIGQTQKVRK*PTNDLR Trigger: TCTCAAGTCATTGGTTGGCCATTTCCTCACTTTTTG...AGTTTGTCCAATTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGGCTGATGGAAACAGATaGAAAGACCTACAACCAAAC | + |
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Preference number: 2 (lower is better) Translates to: SPGHILKRCSGIKMEQKVADGNR*KDLQPN Trigger: GTTTGGTTGTAGGTCTTTGCATCTGTTTCCATCAGC...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGGCTCAGAAAATCTTATaGAATAGAGGAAGCAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: SPGHILKRCSGIKMEQKVAQKIL*NRGSKE Trigger: TTCCTTGCTTCCTCTATTCCATAAGATTTTCTGAGC...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR TCA 72 bp | GCTCCATCTGGATATGTAGTAGAGGACTGCCTTATCTaGCATCAGTGGAAGAGGAGCCCCTTAGTCCTCTGG | + |
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Preference number: 3 (lower is better) Translates to: APSGYVVEDCLI*HQWKRSPLVLW Trigger: CCAGAGGACTAAGGGGCTCCTCTTCCACTGATGTCAGATAAGGCAGTCCTCTACTACATATCCAGATGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 72 bp | TCTGGTGTCCAGCATGGGGAAACCCATGGCTCCATCTaGATATGTAGTAGAGGACTGCCTTATCTGACATCA | + |
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Preference number: 3 (lower is better) Translates to: SGVQHGETHGSI*ICSRGLPYLTS Trigger: TGATGTCAGATAAGGCAGTCCTCTACTACATATCCAGATGGAGCCATGGGTTTCCCCATGCTGGACACCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 72 bp | TTTCCCAATCTGTATTCTCTGGCAGGAGTGATTAATTaGCCACATGAGGCCTCAGTGTCAAGCAACCACCCT | + |
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Preference number: 3 (lower is better) Translates to: FPNLYSLAGVIN*PHEASVSSNHP Trigger: AGGGTGGTTGCTTGACACTGAGGCCTCATGTGGCCAATTAATCACTCCTGCCAGAGAATACAGATTGGGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR TCA 72 bp | TATACTTGCAGACAGGATCCTAGCATATCTATCTTCTaGGAGCTCCAGCCAGCAGCTGATGGAAACAGATGC | + |
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Preference number: 3 (lower is better) Translates to: YTCRQDPSISIF*ELQPAADGNRC Trigger: GCATCTGTTTCCATCAGCTGCTGGCTGGAGCTCTCAGAAGATAGATATGCTAGGATCCTGTCTGCAAGTATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR TCA 72 bp | ACACCACATTACACACAGAGAGGTACACAGAAATACTaGTATACTACCAAGCAGAGTGAAGACTTTGGAAGT | + |
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Preference number: 3 (lower is better) Translates to: TPHYTQRGTQKY*YTTKQSEDFGS Trigger: ACTTCCAAAGTCTTCACTCTGCTTGGTAGTATATCAGTATTTCTGTGTACCTCTCTGTGTGTAATGTGGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 72 bp | TCCCGTCTTTCCTCTATTTACGTGTTTTTATGTGTGTaGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAA | + |
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Preference number: 3 (lower is better) Translates to: SRLSSIYVFLCV*HVFFLKWMFRQ Trigger: TTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACATAAAAACACGTAAATAGAGGAAAGACGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CCA 72 bp | GAAAAGATCGCGCCAACCCTATACTCAACAGAGGTATaGTATAGAAAGCACATAAAAATTCAAGAAATTAGA | + |
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Preference number: 3 (lower is better) Translates to: EKIAPTLYSTEV*YRKHIKIQEIR Trigger: TCTAATTTCTTGAATTTTTATGTGCTTTCTATACCATACCTCTGTTGAGTATAGGGTTGGCGCGATCTTTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | AGGAGTGGGTGGACAGCTGGGGGAGCACTCTCAAAGAGACAGAGGGAGGGGGAAACGGCTCTCACCAGATaGAATCTTCAGGACTACGGT | + |
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Preference number: 4 (lower is better) Translates to: RSGWTAGGALSKRQREGETALTR*NLQDYG Trigger: ACCGTAGTCCTGAAGATTCCATCTGGTGAGAGCCGT...TTCCCCCTCCCTCTGTCTCTTTGAGAGTGCTCCCCCAGCTGTCCACCCACTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | AGGAGTGGGTGGACAGCTGGGGGAGCACTCTCAAAGAGACAGAGGGAGGGGGAATTCTCCAATAGTGGTTaGAAGGTGACAGAGAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: RSGWTAGGALSKRQREGEFSNSG*KVTEKR Trigger: GCGCTTCTCTGTCACCTTCCAACCACTATTGGAGAA...TTCCCCCTCCCTCTGTCTCTTTGAGAGTGCTCCCCCAGCTGTCCACCCACTCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR GCA 90 bp | CTGGTGTCCAGCATGGGGAAACCCATGGCTCCATCTGGATATGTAGTAGAGGACTGTGCATGTGGAGAATaGCTTCTGACGGCTCTCACC | + |
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Preference number: 4 (lower is better) Translates to: LVSSMGKPMAPSGYVVEDCACGE*LLTALT Trigger: GGTGAGAGCCGTCAGAAGGCATTCTCCACATGCACA...GTCCTCTACTACATATCCAGATGGAGCCATGGGTTTCCCCATGCTGGACACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | CTGGTGTCCAGCATGGGGAAACCCATGGCTCCATCTGGATATGTAGTAGAGGACCACAGAGCAGAAGGATaGAGAGCAAAAGGCCACCAT | + |
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Preference number: 4 (lower is better) Translates to: LVSSMGKPMAPSGYVVEDHRAEG*RAKGHH Trigger: ATGGTGGCCTTTTGCTCTTCATCCTTCTGCTCTGTG...GTCCTCTACTACATATCCAGATGGAGCCATGGGTTTCCCCATGCTGGACACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | ACAGAATTAAATAACCTGAACCCACAGGGGCTCACTGGAACTGAACCACCTCCTTATCCACACAATCTCTaGGAGGAGCATGAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: TELNNLNPQGLTGTEPPPYPHNL*EEHEEA Trigger: GGCTTCCTCATGCTCCTCCCAGAGATTGTGTGGATA...AGGAGGTGGTTCAGTTCCAGTGAGCCCCTGTGGGTTCAGGTTATTTAATTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | CTGGTGTCCAGCATGGGGAAACCCATGGCTCCATCTGGATATGTAGTAGAGGACTATAGGATTGACAAATaGGGCAAGGACAGCAAACAT | + |
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Preference number: 4 (lower is better) Translates to: LVSSMGKPMAPSGYVVEDYRIDK*GKDSKH Trigger: ATGTTTGCTGTCCTTGCCCCATTTGTCAATCCTATA...GTCCTCTACTACATATCCAGATGGAGCCATGGGTTTCCCCATGCTGGACACCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CAA 72 bp | CTAACCTTCACAAGTATAAGCTGGATGTACGTGTCATaGGGAGAAGCTTACATGGAACTCAGGCCCTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LTFTSISWMYVS*GEAYMELRPSA Trigger: TGCAGAGGGCCTGAGTTCCATGTAAGCTTCTCCCAATGACACGTACATCCAGCTTATACTTGTGAAGGTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | ACAGAATTAAATAACCTGAACCCACAGGGGCTCACTGGAACTGAACCACCTCCTAGGATGGAGATAGCATaGATGACATCTTCAACCAGA | + |
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Preference number: 4 (lower is better) Translates to: TELNNLNPQGLTGTEPPPRMEIA*MTSSTR Trigger: TCTGGTTGAAGATGTCATCCATGCTATCTCCATCCT...AGGAGGTGGTTCAGTTCCAGTGAGCCCCTGTGGGTTCAGGTTATTTAATTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | ACAGAATTAAATAACCTGAACCCACAGGGGCTCACTGGAACTGAACCACCTCCTCAAACATTAGTGCAATaGCCTTCTCCAATAGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: TELNNLNPQGLTGTEPPPQTLVQ*PSPIVV Trigger: AACCACTATTGGAGAAGGTCATTGCACTAATGTTTG...AGGAGGTGGTTCAGTTCCAGTGAGCCCCTGTGGGTTCAGGTTATTTAATTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | CATGTGACAGATGTAGACTACCTCTGTATAAATAACCAATACACAGCTTGGTCTATAGTGGTTGGAAGGTaGCAGAGAAGCGCAGGTACA | + |
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Preference number: 4 (lower is better) Translates to: HVTDVDYLCINNQYTAWSIVVGR*QRSAGT Trigger: TGTACCTGCGCTTCTCTGTCACCTTCCAACCACTAT...AGACCAAGCTGTGTATTGGTTATTTATACAGAGGTAGTCTACATCTGTCACATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | GTAGACTACCTCTGTATAAATAACCAATACACAGCTTGGTCTTCGTGTGGGACTAGCTCCCAGAGACAGTaGGTATCTTTTGAGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: VDYLCINNQYTAWSSCGTSSQRQ*VSFENQ Trigger: TTGGTTCTCAAAAGATACTCACTGTCTCTGGGAGCT...AGTCCCACACGAAGACCAAGCTGTGTATTGGTTATTTATACAGAGGTAGTCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | ATGTGTGTGGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAATTGGACAAACTCATCCCCAACAACAATaGAGAGGTAGACACAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: MCVACILPKVDVSSIGQTHPQQQ*RGRHRA Trigger: TGCTCTGTGTCTACCTCTTCATTGTTGTTGGGGATG...AGTTTGTCCAATTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | GTAGACTACCTCTGTATAAATAACCAATACACAGCTTGGTCTTCGTGTGGGACTTGGTTTTCTCTTTGCTaGCCAGGTTGTAGAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: VDYLCINNQYTAWSSCGTWFSLC*PGCRAF Trigger: AAATGCTCTACAACCTGGTCAGCAAAGAGAAAACCA...AGTCCCACACGAAGACCAAGCTGTGTATTGGTTATTTATACAGAGGTAGTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR TCA 90 bp | ATGTGTGTGGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAATTGGACAAACTGCAGCAGACAGCCAATaGAGGAGATGGTTTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: MCVACILPKVDVSSIGQTAADSQ*RRWFSL Trigger: AAGAGAAAACCATCTCCTTCATTGGCTGTCTGCTGC...AGTTTGTCCAATTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR GCA 90 bp | CATGTGACAGATGTAGACTACCTCTGTATAAATAACCAATACACAGCTTGGTCTAGATGTGTCTGTACATaGCAAGAGGAGCACAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: HVTDVDYLCINNQYTAWSRCVCT*QEEHRF Trigger: GAACCTGTGCTCCTCTTGGCATGTACAGACACATCT...AGACCAAGCTGTGTATTGGTTATTTATACAGAGGTAGTCTACATCTGTCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGGGGGAATGGTCACTGTaGTGTAGCAAATCTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SPGHILKRCSGIKMEQKVGEWSL*CSKSPG Trigger: TCCTGGAGATTTGCTACACCACAGTGACCATTCCCC...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CAA 72 bp | GGGTCTGTCTCTAACTTTCCCAATCCCATAAATGTTTaGTCTTGTCTAGGCTCAATAGAAGAAACTGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GSVSNFPNPINV*SCLGSIEETVS Trigger: AGACACAGTTTCTTCTATTGAGCCTAGACAAGACAAAACATTTATGGGATTGGGAAAGTTAGAGACAGACCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR GCA 90 bp | ATGTGTGTGGCATGTATTCTTCCTAAAGTGGATGTTTCGTCAATTGGACAAACTTGGAGTTATAATGATTaGATAGCGAAGTGGGTTACA | + |
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Preference number: 4 (lower is better) Translates to: MCVACILPKVDVSSIGQTWSYND*IAKWVT Trigger: TGTAACCCACTTCGCTATGCAATCATTATAACTCCA...AGTTTGTCCAATTGACGAAACATCCACTTTAGGAAGAATACATGCCACACACAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGACAAAAATGGTGATGTaGGCTGTGCATGTGGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: SPGHILKRCSGIKMEQKVTKMVM*AVHVEN Trigger: ATTCTCCACATGCACAGCCCACATCACCATTTTTGT...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| 3UTR CAA 72 bp | AGAAATACTGATATACTACCAAGCAGAGTGAAGACTTaGGAAGTAAAATCCCGTCTTTCCTCTATTTACGTG | + |
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Preference number: 4 (lower is better) Translates to: RNTDILPSRVKT*EVKSRLSSIYV Trigger: CACGTAAATAGAGGAAAGACGGGATTTTACTTCCAAAGTCTTCACTCTGCTTGGTAGTATATCAGTATTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGCTGTGTGCAGAGCTTTaGAGTTATAATGATTGCATA | + |
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Preference number: 4 (lower is better) Translates to: SPGHILKRCSGIKMEQKVLCAEL*SYNDCI Trigger: TATGCAATCATTATAACTCCAAAGCTCTGCACACAG...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS-3UTR CAA 90 bp | TCTCCTGGTCATATATTAAAAAGATGTTCAGGGATAAAGATGGAGCAAAAAGTGCAGGTTGTAGAGCATTaGGGGAATGGTCACTGTGGT | + |
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Preference number: 5 (lower is better) Translates to: SPGHILKRCSGIKMEQKVQVVEH*GNGHCG Trigger: ACCACAGTGACCATTCCCCAAATGCTCTACAACCTG...CACTTTTTGCTCCATCTTTATCCCTGAACATCTTTTTAATATATGACCAGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000213832.2 |
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| CDS CAA 72 bp | AGGAAGGAGAAGATGCTGATGAAACTGTACATGGGATaGTGCAGACGGACATCCAGCTGCACATCCAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: RKEKMLMKLYMG*CRRTSSCTSKK Trigger: CTTCTTGGATGTGCAGCTGGATGTCCGTCTGCACAATCCCATGTACAGTTTCATCAGCATCTTCTCCTTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080831.4 ENSMUST00000213832.2 |
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