Pregenerated sensors for OLFR402 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070379Ensembl transcript IDs: ENSMUST00000073675.5, ENSMUST00000216722.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTCTCGGAGTCAAATGGGATATGTTTTGCTGTAGTGTTAAATGCTaGGAAGTGATGGTGGAAGAAGTGACCATTCCCTGCACTAGTAGA | + |
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Preference number: 1 (lower is better) Translates to: GLGVKWDMFCCSVKC*EVMVEEVTIPCTSR Trigger: TCTACTAGTGCAGGGAATGGTCACTTCTTCCACCATCACTTCTCAGCATTTAACACTACAGCAAAACATATCCCATTTGACTCCGAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR TCA 90 bp | TTGAGTAGTGTGGCACTTAAAGTTGAGAAATGTGAGGAAGATAATTaGGGGAAGCTCTTTTCCATCATAATGTCTCTATCTTGTGAGTGG | + |
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Preference number: 1 (lower is better) Translates to: LSSVALKVEKCEEDN*GKLFSIIMSLSCEW Trigger: CCACTCACAAGATAGAGACATTATGATGGAAAAGAGCTTCCCTCAATTATCTTCCTCACATTTCTCAACTTTAAGTGCCACACTACTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCGTGAAGGGCAAGATGGTGATAGGCTGAAGCTCAGTGGTCTCGGAGTCAAACAAAGAATCCATCTCTaGCATACCAATTTTATCCCT | + |
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Preference number: 2 (lower is better) Translates to: WREGQDGDRLKLSGLGVKQRIHL*HTNFIP Trigger: AGGGATAAAATTGGTATGTCAGAGATGGATTCTTTG...TTTGACTCCGAGACCACTGAGCTTCAGCCTATCACCATCTTGCCCTTCACGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCGTGAAGGGCAAGATGGTGATAGGCTGAAGCTCAGTGGTCTCGGAGTCAAAGATGAGAGTGTTAGATaGATTTATGGATTAGAGACG | + |
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Preference number: 2 (lower is better) Translates to: WREGQDGDRLKLSGLGVKDESVR*IYGLET Trigger: CGTCTCTAATCCATAAATCCATCTAACACTCTCATC...TTTGACTCCGAGACCACTGAGCTTCAGCCTATCACCATCTTGCCCTTCACGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | TCTTTCCAACTCTATCTTAGCCCATTCCTCCAGTCTACCCACCCAAATCATATAGTACAGTCAGGTCTGTaGACTGCATGCAGATACCAG | + |
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Preference number: 2 (lower is better) Translates to: SFQLYLSPFLQSTHPNHIVQSGL*TACRYQ Trigger: CTGGTATCTGCATGCAGTTCACAGACCTGACTGTAC...TATATGATTTGGGTGGGTAGACTGGAGGAATGGGCTAAGATAGAGTTGGAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGCTAGAGAAATGGCAGATGTACCCTCAGGCACTCCAGCACTATCAGCAAAACATGGGCATGATCTTTaGGCAACAATAATTATCATC | + |
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Preference number: 2 (lower is better) Translates to: LAREMADVPSGTPALSAKHGHDL*ATIIII Trigger: GATGATAATTATTGTTGCCCAAAGATCATGCCCATG...TTTTGCTGATAGTGCTGGAGTGCCTGAGGGTACATCTGCCATTTCTCTAGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | AATATTAGACTGAGAGAGCCTTCCTTGTTCATTTTACCAAGTACAGGTCAAGAGGGCAGACCTTCTCCATaGCTTTATAGGTGCCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: NIRLREPSLFILPSTGQEGRPSP*LYRCLS Trigger: AGAGAGGCACCTATAAAGTCATGGAGAAGGTCTGCC...CTCTTGACCTGTACTTGGTAAAATGAACAAGGAAGGCTCTCTCAGTCTAATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR GCA 90 bp | ATCCCTGGAGCCCATGTCAACCTCTGTAATGCTTCTGCTATTTCTTTTCAACCCCTCCTCAAGTTAGGTTaGATACATAGACCAAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: IPGAHVNLCNASAISFQPLLKLG*IHRPKV Trigger: TACCTTTGGTCTATGTATGCAACCTAACTTGAGGAG...GGGTTGAAAAGAAATAGCAGAAGCATTACAGAGGTTGACATGGGCTCCAGGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 90 bp | CTCAGGCACTCCAGCACTATCAGCAAAATTCTTGATACCTTTTTCTaGGGAGAGAGGATAGACAACAATAATGGCTTCAGGACTGTCAAA | + |
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Preference number: 2 (lower is better) Translates to: LRHSSTISKILDTFF*GERIDNNNGFRTVK Trigger: TTTGACAGTCCTGAAGCCATTATTGTTGTCTATCCTCTCTCCCAAGAAAAAGGTATCAAGAATTTTGCTGATAGTGCTGGAGTGCCTGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | TGCTTCTTTGTGATAGTGATGCCCGTTGCTCTGTTTTACTTCACTAATGGTGCTCAACCCTTTGATCCTTaGTTCCAATCTCTCCTATGT | + |
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Preference number: 2 (lower is better) Translates to: CFFVIVMPVALFYFTNGAQPFDP*FQSLLC Trigger: ACATAGGAGAGATTGGAATCAAGGATCAAAGGGTTG...AGCACCATTAGTGAAGTAAAACAGAGCAACGGGCATCACTATCACAAAGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR CCA 90 bp | TGCTTCTTTGTGATAGTGATGCCCGTTGCTCTGTTTTACTTCACTAATGGTGCTGGTCTCGGAGTCAAATaGGATATGTTTTGCTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: CFFVIVMPVALFYFTNGAGLGVK*DMFCCS Trigger: ACTACAGCAAAACATATCCCATTTGACTCCGAGACC...AGCACCATTAGTGAAGTAAAACAGAGCAACGGGCATCACTATCACAAAGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGATTCCAATCTCTCCTATGTCCACATAGTTTATCTGCATTTCCCAACAAATAAGAGGAACATTTTCTaGGATACTCTGGGAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: LDSNLSYVHIVYLHFPTNKRNIF*DTLGTP Trigger: TGGAGTTCCCAGAGTATCTCAGAAAATGTTCCTCTT...ATTTGTTGGGAAATGCAGATAAACTATGTGGACATAGGAGAGATTGGAATCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR TCA 90 bp | AATATTAGACTGAGAGAGCCTTCCTTGTTCATTTTACCAAGTACAGGTCAAGAGTTCTTTTCAACCCTTTaGTCCTTGATTCCAATCTCT | + |
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Preference number: 2 (lower is better) Translates to: NIRLREPSLFILPSTGQEFFSTL*SLIPIS Trigger: AGAGATTGGAATCAAGGATCAAAGGGTTGAAAAGAA...CTCTTGACCTGTACTTGGTAAAATGAACAAGGAAGGCTCTCTCAGTCTAATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCGTGAAGGGCAAGATGGTGATAGGCTGAAGCTCAGTGGTCTCGGAGTCAAACATCCCCTAACCCTGTaGAATTCCCTCATCTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: WREGQDGDRLKLSGLGVKHPLTL*NSLIWQ Trigger: CTGCCAGATGAGGGAATTCAACAGGGTTAGGGGATG...TTTGACTCCGAGACCACTGAGCTTCAGCCTATCACCATCTTGCCCTTCACGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR-3UTR CAA 90 bp | TGGCGTGAAGGGCAAGATGGTGATAGGCTGAAGCTCAGTGGTCTCGGAGTCAAACTGAATCATATAGAGTaGTATAAGAGGAATGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: WREGQDGDRLKLSGLGVKLNHIE*YKRNEP Trigger: TGGCTCATTCCTCTTATACAACTCTATATGATTCAG...TTTGACTCCGAGACCACTGAGCTTCAGCCTATCACCATCTTGCCCTTCACGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CCA 72 bp | TATGGTGAGTTACTAGGCAAATTATCTCTTGAAGTATaGCGTGAAGGGCAAGATGGTGATAGGCTGAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: YGELLGKLSLEV*REGQDGDRLKL Trigger: GAGCTTCAGCCTATCACCATCTTGCCCTTCACGCCATACTTCAAGAGATAATTTGCCTAGTAACTCACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR GCA 72 bp | AGTGGAGTTTTGACATGTACAGTCAGGTCTGTGAACTaGATGCAGATACCAGTTACTAGGGAATATGAAACC | + |
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Preference number: 3 (lower is better) Translates to: SGVLTCTVRSVN*MQIPVTREYET Trigger: GGTTTCATATTCCCTAGTAACTGGTATCTGCATGCAGTTCACAGACCTGACTGTACATGTCAAAACTCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR TCA 72 bp | GTGGCACTTAAAGTTGAGAAATGTGAGGAAGATAATTaGGGGAAGCTCTTTTCCATCATAATGTCTCTATCT | + |
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Preference number: 3 (lower is better) Translates to: VALKVEKCEEDN*GKLFSIIMSLS Trigger: AGATAGAGACATTATGATGGAAAAGAGCTTCCCTCAATTATCTTCCTCACATTTCTCAACTTTAAGTGCCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR TCA 72 bp | AATGCTTCTGCTATTTCTTTTCAACCCTTTGATCCTTaGTTCCAATCTCTCCTATGTCCACATAGTTTATCT | + |
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Preference number: 3 (lower is better) Translates to: NASAISFQPFDP*FQSLLCPHSLS Trigger: AGATAAACTATGTGGACATAGGAGAGATTGGAATCAAGGATCAAAGGGTTGAAAAGAAATAGCAGAAGCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR GCA 90 bp | TCTTTCCAACTCTATCTTAGCCCATTCCTCCAGTCTACCCACCCAAATCATATACTCCAGAGGGCAGCCTaGACATCAGGGTTCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: SFQLYLSPFLQSTHPNHILQRAA*TSGFLR Trigger: TCTCAGGAACCCTGATGTGCAGGCTGCCCTCTGGAG...TATATGATTTGGGTGGGTAGACTGGAGGAATGGGCTAAGATAGAGTTGGAAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | TTGTTGGACACTTACCCAGTACATCCCCTAACCCTGTaGAATTCCCTCATCTGGCAGACCTTCTCCATGACT | + |
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Preference number: 4 (lower is better) Translates to: LLDTYPVHPLTL*NSLIWQTFSMT Trigger: AGTCATGGAGAAGGTCTGCCAGATGAGGGAATTCAACAGGGTTAGGGGATGTACTGGGTAAGTGTCCAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CCA 90 bp | ATCCCTGGAGCCCATGTCAACCTCTGTAATGCTTCTGCTATTTCTTTTCAACCCAGTGAAGTGTGGATATaGCTACTGTGTGTGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: IPGAHVNLCNASAISFQPSEVWI*LLCVSV Trigger: CACTGACACACACAGTAGCCATATCCACACTTCACT...GGGTTGAAAAGAAATAGCAGAAGCATTACAGAGGTTGACATGGGCTCCAGGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CCA 90 bp | TCCCTGGAGCCCATGTCAACCTCTGTAATGCTTCTGCTATTTCTTTTCAACCCTCACAGAAGTGAAGTGTaGATATGGCTACTGTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLEPMSTSVMLLLFLFNPHRSEV*IWLLCV Trigger: CACACACAGTAGCCATATCCACACTTCACTTCTGTG...AGGGTTGAAAAGAAATAGCAGAAGCATTACAGAGGTTGACATGGGCTCCAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR GCA 90 bp | AATATTAGACTGAGAGAGCCTTCCTTGTTCATTTTACCAAGTACAGGTCAAGAGAGACAGCTGCCAGGATaGTCAGGTTACCTCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: NIRLREPSLFILPSTGQERQLPG*SGYLQL Trigger: CAGTTGGAGGTAACCTGAGCATCCTGGCAGCTGTCT...CTCTTGACCTGTACTTGGTAAAATGAACAAGGAAGGCTCTCTCAGTCTAATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR GCA 90 bp | TCCCTGGAGCCCATGTCAACCTCTGTAATGCTTCTGCTATTTCTTTTCAACCCTAGAGATAAAAATGAGTaGCATAGGGGTTCCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SLEPMSTSVMLLLFLFNPRDKNE*HRGSCH Trigger: ATGGCAGGAACCCCTATGGCACTCATTTTTATCTCT...AGGGTTGAAAAGAAATAGCAGAAGCATTACAGAGGTTGACATGGGCTCCAGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CCA 90 bp | ATCCCTGGAGCCCATGTCAACCTCTGTAATGCTTCTGCTATTTCTTTTCAACCCGAGGCAGTCTCCATATaGAATTGTATGCTTTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: IPGAHVNLCNASAISFQPEAVSI*NCMLLD Trigger: GTCCAAAAGCATACAATTCCATATGGAGACTGCCTC...GGGTTGAAAAGAAATAGCAGAAGCATTACAGAGGTTGACATGGGCTCCAGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CCA 90 bp | CTGGCTAGAGAAATGGCAGATGTACCCTCAGGCACTCCAGCACTATCAGCAAAATATCTGAAAATTTGGTaGAACCCAGTCTCATGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LAREMADVPSGTPALSAKYLKIW*NPVSCS Trigger: ACTACATGAGACTGGGTTCCACCAAATTTTCAGATA...TTTTGCTGATAGTGCTGGAGTGCCTGAGGGTACATCTGCCATTTCTCTAGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR TCA 90 bp | CTTGATTCCAATCTCTCCTATGTCCACATAGTTTATCTGCATTTCCCAACAAATGGGTTCCTGCCATTATaGAACCCACTCCAAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LDSNLSYVHIVYLHFPTNGFLPL*NPLQRA Trigger: TGCTCTTTGGAGTGGGTTTCATAATGGCAGGAACCC...ATTTGTTGGGAAATGCAGATAAACTATGTGGACATAGGAGAGATTGGAATCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR TCA 90 bp | ACTGCATGCAGATACCAGTTACTAGGGAATATGAAACCAGAGTGCAAAATTTCTAGCTTTGTCCTTATCTaGAAATTTGGTGGAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: TACRYQLLGNMKPECKISSFVLI*KFGGTQ Trigger: CTGGGTTCCACCAAATTTTCAGATAAGGACAAAGCT...AGAAATTTTGCACTCTGGTTTCATATTCCCTAGTAACTGGTATCTGCATGCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR GCA 90 bp | CTTGATTCCAATCTCTCCTATGTCCACATAGTTTATCTGCATTTCCCAACAAATTCGCAGAACTGCAGCTaGCACATGGATATAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: LDSNLSYVHIVYLHFPTNSQNCS*HMDIRD Trigger: ATCTCTTATATCCATGTGGCAGCTGCAGTTCTGCGA...ATTTGTTGGGAAATGCAGATAAACTATGTGGACATAGGAGAGATTGGAATCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | AAACATAATGAAGTAAGACCCTTGTTTACTCTGTCTTaGGACAGCATTAGTAGGCAGGAATCAGAAGACAGG | + |
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Preference number: 4 (lower is better) Translates to: KHNEVRPLFTLS*DSISRQESEDR Trigger: CCTGTCTTCTGATTCCTGCCTACTAATGCTGTCCAAAGACAGAGTAAACAAGGGTCTTACTTCATTATGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | AGCAGAGAATTCAATCTGAGAGCATTTTCTAGATCCTaGTACGAAGCTCATTGTGTGTATCCTGAAGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SREFNLRAFSRS*YEAHCVYPEVC Trigger: ACACACTTCAGGATACACACAATGAGCTTCGTACAAGGATCTAGAAAATGCTCTCAGATTGAATTCTCTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | AACAGAGCCAAAAATATTAGACTGAGAGAGCCTTCCTaGTTCATTTTACCAAGTACAGGTCAAGAGATGGTA | + |
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Preference number: 4 (lower is better) Translates to: NRAKNIRLREPS*FILPSTGQEMV Trigger: TACCATCTCTTGACCTGTACTTGGTAAAATGAACAAGGAAGGCTCTCTCAGTCTAATATTTTTGGCTCTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | GCAAAATTTCTCTCATTTCCTCTGAATCATATAGAGTaGTATAAGAGGAATGAGCCATTTCTCCTCAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: AKFLSFPLNHIE*YKRNEPFLLKL Trigger: TAACTTGAGGAGAAATGGCTCATTCCTCTTATACAACTCTATATGATTCAGAGGAAATGAGAGAAATTTTGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| 3UTR CAA 72 bp | GAGGTGAAGAGTGAGAATTTACAGAGAAATTTAATATaGAGTAGTGTGGCACTTAAAGTTGAGAAATGTGAG | + |
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Preference number: 4 (lower is better) Translates to: EVKSENLQRNLI*SSVALKVEKCE Trigger: CTCACATTTCTCAACTTTAAGTGCCACACTACTCAATATTAAATTTCTCTGTAAATTCTCACTCTTCACCTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS CCA 90 bp | TCCAACTGTTGTCATGTAAGCCAAGAGGAAGAGTATGAAGACAAGTaGCCACAGCTCTGGTGTCTCCACCAAACCCAGAAGAATGAATTC | + |
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Preference number: 5 (lower is better) Translates to: SNCCHVSQEEEYEDK*PQLWCLHQTQKNEF Trigger: GAATTCATTCTTCTGGGTTTGGTGGAGACACCAGAGCTGTGGCCACTTGTCTTCATACTCTTCCTCTTGGCTTACATGACAACAGTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073675.5 ENSMUST00000216722.2 |
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| CDS-3UTR CAA 90 bp | TGCTTCTTTGTGATAGTGATGCCCGTTGCTCTGTTTTACTTCACTAATGGTGCTTGGAATTGTATGCTTTaGGACCAAGAGCCGAACCAA | + |
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Preference number: 5 (lower is better) Translates to: CFFVIVMPVALFYFTNGAWNCML*DQEPNQ Trigger: TTGGTTCGGCTCTTGGTCCAAAAGCATACAATTCCA...AGCACCATTAGTGAAGTAAAACAGAGCAACGGGCATCACTATCACAAAGAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CAA 90 bp | TGCTTCTTTGTGATAGTGATGCCCGTTGCTCTGTTTTACTTCACTAATGGTGCTTCCTTATCTGAAAATTaGGTGGAACCCAGTCTCATG | + |
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Preference number: 5 (lower is better) Translates to: CFFVIVMPVALFYFTNGASLSEN*VEPSLM Trigger: CATGAGACTGGGTTCCACCAAATTTTCAGATAAGGA...AGCACCATTAGTGAAGTAAAACAGAGCAACGGGCATCACTATCACAAAGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS-3UTR CAA 90 bp | AATATTAGACTGAGAGAGCCTTCCTTGTTCATTTTACCAAGTACAGGTCAAGAGGGGTTGATGACAGTGTaGAAAATCCCAATAGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: NIRLREPSLFILPSTGQEGLMTV*KIPIAL Trigger: CAAAGCTATTGGGATTTTCAACACTGTCATCAACCC...CTCTTGACCTGTACTTGGTAAAATGAACAAGGAAGGCTCTCTCAGTCTAATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000216722.2 |
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| CDS CCA 72 bp | TGTCATGTAAGCCAAGAGGAAGAGTATGAAGACAAGTaGCCACAGCTCTGGTGTCTCCACCAAACCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: CHVSQEEEYEDK*PQLWCLHQTQK Trigger: CTTCTGGGTTTGGTGGAGACACCAGAGCTGTGGCCACTTGTCTTCATACTCTTCCTCTTGGCTTACATGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073675.5 ENSMUST00000216722.2 |
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| CDS CCA 72 bp | TGTGTGAGGCAGTCTCCATATGGAATTGTATGCTTTTaGACCAAGAGCCGAACCAACATGGAGGGAATAGTG | + |
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Preference number: 6 (lower is better) Translates to: CVRQSPYGIVCF*TKSRTNMEGIV Trigger: CACTATTCCCTCCATGTTGGTTCGGCTCTTGGTCCAAAAGCATACAATTCCATATGGAGACTGCCTCACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073675.5 ENSMUST00000216722.2 |
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