RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR395 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062186

Ensembl transcript IDs: ENSMUST00000072991.2, ENSMUST00000215690.2

Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTACAGGGTCACACTGTGCAGTTGGGCTGGCCTCACATTTACAGTaGTCATTCTGCCTGAGCTGCATGTGTGCTGGGATCACAGGCATA +
Preference number: 1 (lower is better)
Translates to: FTGSHCAVGLASHLQ*SFCLSCMCAGITGI
Trigger: TATGCCTGTGATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAATGTGAGGCCAGCCCAACTGCACAGTGTGACCCTGTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 90 bp ACTGTGCAGTTGGGCTGGCCTCACATTTACAGTGATCATTCTGCCTaGGCTGCATGTGTGCTGGGATCACAGGCATATTATTATACCTGC +
Preference number: 1 (lower is better)
Translates to: TVQLGWPHIYSDHSA*AACVLGSQAYYYTC
Trigger: GCAGGTATAATAATATGCCTGTGATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAATGTGAGGCCAGCCCAACTGCACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp TGTGTAAAAGTAGCAGGAAAGGCATATCAGCAGCAAAAAGAAGCCTaGGACAAAGTCTCTAGGGCTGTGAGTCTTCAGAGTACACCCATC +
Preference number: 1 (lower is better)
Translates to: CVKVAGKAYQQQKEA*DKVSRAVSLQSTPI
Trigger: GATGGGTGTACTCTGAAGACTCACAGCCCTAGAGACTTTGTCCCAGGCTTCTTTTTGCTGCTGATATGCCTTTCCTGCTACTTTTACACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp GACCTCACATGGTTACACTGTGCAGTGAGCAAGGCTAACCTCTCATaGTTTCATTGTTCAGTGAAGATGAATTTACAGGGTCACACTGTG +
Preference number: 1 (lower is better)
Translates to: DLTWLHCAVSKANLS*FHCSVKMNLQGHTV
Trigger: CACAGTGTGACCCTGTAAATTCATCTTCACTGAACAATGAAACCATGAGAGGTTAGCCTTGCTCACTGCACAGTGTAACCATGTGAGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp GGCCTCACATTTACAGTGATCATTCTGCCTGAGCTGCATGTGTGCTaGGATCACAGGCATATTATTATACCTGCCTTGATTTCTAACATT +
Preference number: 1 (lower is better)
Translates to: GLTFTVIILPELHVC*DHRHIIIPALISNI
Trigger: AATGTTAGAAATCAAGGCAGGTATAATAATATGCCTGTGATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAATGTGAGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp TCAAAATTATATGAGAGGCTATTATCCACTTTTGTAAATGTGGTGTaGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: SKLYERLLSTFVNVV*CVFVCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACAAACACACACCACACCACATTTACAAAAGTGGATAATAGCCTCTCATATAATTTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp TATAAGTATATGCATACACATATTTCCATGATGCTCCCTGAGCCTTaGAGAAGGGATGGTCCATATAAGATCCCATCTATGGATACATAT +
Preference number: 1 (lower is better)
Translates to: YKYMHTHISMMLPEP*RRDGPYKIPSMDTY
Trigger: ATATGTATCCATAGATGGGATCTTATATGGACCATCCCTTCTCCAAGGCTCAGGGAGCATCATGGAAATATGTGTATGCATATACTTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 90 bp GCTATGTGTCCAGGTGAACTACTTCTCATTCATATGATAACTTTATaGTCAATAAACCACAAGTCCAACATCAATGTTTGGGAGTTTCAT +
Preference number: 1 (lower is better)
Translates to: AMCPGELLLIHMITL*SINHKSNINVWEFH
Trigger: ATGAAACTCCCAAACATTGATGTTGGACTTGTGGTTTATTGACCATAAAGTTATCATATGAATGAGAAGTAGTTCACCTGGACACATAGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 90 bp AAGGAAGAAGTTGAAGACAGATATCAAAGACAGTATTGCCTACTTTaGTTCATGCACCAAGCCTCTTTTTGTTCATGTATTGAACAGTTA +
Preference number: 1 (lower is better)
Translates to: KEEVEDRYQRQYCLL*FMHQASFCSCIEQL
Trigger: TAACTGTTCAATACATGAACAAAAAGAGGCTTGGTGCATGAATCAAAGTAGGCAATACTGTCTTTGATATCTGTCTTCAACTTCTTCCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR GCA 90 bp ATGATGCTCCCTGAGCCTTGGAGAAGGGATGGTCCATATAAGATCCCATCTATGTACAGGGTCACACTGTaGAGTTGGGCTGGCCTCACA +
Preference number: 2 (lower is better)
Translates to: MMLPEPWRRDGPYKIPSMYRVTL*SWAGLT
Trigger: TGTGAGGCCAGCCCAACTGCACAGTGTGACCCTGTA...CATAGATGGGATCTTATATGGACCATCCCTTCTCCAAGGCTCAGGGAGCATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCATGTACCCCAGGCAGTaGGAAGCCCTTAGAGGCTGG +
Preference number: 2 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPMYPRQ*EALRGW
Trigger: CCAGCCTCTAAGGGCTTCTCACTGCCTGGGGTACAT...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCAGTGATCATTCTGCCTaGGCTGCATGTGTGCTGGGA +
Preference number: 2 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPSDHSA*AACVLG
Trigger: TCCCAGCACACATGCAGCTCAGGCAGAATGATCACT...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp ATGATGCTCCCTGAGCCTTGGAGAAGGGATGGTCCATATAAGATCCCATCTATGCTATTCATCTCAGTCTaGCCTCACAGGATCTCACTT +
Preference number: 2 (lower is better)
Translates to: MMLPEPWRRDGPYKIPSMLFISV*PHRISL
Trigger: AAGTGAGATCCTGTGAGGTCAGACTGAGATGAATAG...CATAGATGGGATCTTATATGGACCATCCCTTCTCCAAGGCTCAGGGAGCATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCCACATGAAGATGATGTaGCAGGGGGTAGTAGACAGT +
Preference number: 2 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPHMKMM*QGVVDS
Trigger: ACTGTCTACTACCCCCTGCCACATCATCTTCATGTG...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCACTGTGCAGTTGGGCTaGCCTCACATTTACAGTGAT +
Preference number: 2 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPTVQLG*PHIYSD
Trigger: ATCACTGTAAATGTGAGGCCAGCCCAACTGCACAGT...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCTCTTCTCTACCTCTTTaGGATTGTCACAAGGATATG +
Preference number: 2 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPSSLPL*DCHKDM
Trigger: CATATCCTTGTGACAATCTCAAAGAGGTAGAGAAGA...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR GCA 90 bp ATGATGCTCCCTGAGCCTTGGAGAAGGGATGGTCCATATAAGATCCCATCTATGTCTAGGCTAGATTTTTaGATTTTGGCATTTCTTTGC +
Preference number: 2 (lower is better)
Translates to: MMLPEPWRRDGPYKIPSMSRLDF*ILAFLC
Trigger: GCAAAGAAATGCCAAAATGCAAAAATCTAGCCTAGA...CATAGATGGGATCTTATATGGACCATCCCTTCTCCAAGGCTCAGGGAGCATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp GTTATGAAAATCGGTGGGTGGGAGATGACATCAGATTTCAAGAAACAGGGTAAAAATACCAAGGACAACTaGGGAAATATGAATGGGCCA +
Preference number: 2 (lower is better)
Translates to: VMKIGGWEMTSDFKKQGKNTKDN*GNMNGP
Trigger: TGGCCCATTCATATTTCCTCAGTTGTCCTTGGTATT...TTTACCCTGTTTCTTGAAATCTGATGTCATCTCCCACCCACCGATTTTCATAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp GTTATGAAAATCGGTGGGTGGGAGATGACATCAGATTTCAAGAAACAGGGTAAAACAACTGAGGAAATATaGATGGGCCAAAGTTATTCC +
Preference number: 2 (lower is better)
Translates to: VMKIGGWEMTSDFKKQGKTTEEI*MGQSYS
Trigger: GGAATAACTTTGGCCCATTCATATTTCCTCAGTTGT...TTTACCCTGTTTCTTGAAATCTGATGTCATCTCCCACCCACCGATTTTCATAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CCA 90 bp GTAGCTATGTGTCCAGGTGAACTACTTCTCATTCATATGATAACTTTATGGTCAGAAGAGAAGACTGTGTaGAAACAGAAGAGCTCAAGG +
Preference number: 2 (lower is better)
Translates to: VAMCPGELLLIHMITLWSEEKTV*KQKSSR
Trigger: CCTTGAGCTCTTCTGTTTCCACACAGTCTTCTCTTC...TGACCATAAAGTTATCATATGAATGAGAAGTAGTTCACCTGGACACATAGCTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR TCA 90 bp CATTTTGGCATTTCTTTGCATTACTCAGCAGAGCTTTTGTTTCCATTCTATAGCCATTGCCCCTTTCTGTaGGACAAGAAGTCATTTAAC +
Preference number: 2 (lower is better)
Translates to: HFGISLHYSAELLFPFYSHCPFL*DKKSFN
Trigger: GTTAAATGACTTCTTGTCTCACAGAAAGGGGCAATG...GCTATAGAATGGAAACAAAAGCTCTGCTGAGTAATGCAAAGAAATGCCAAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CCA 90 bp AAAGTAGAATTGCTTTATGGTTTCATACACATTAACACATTGCCCCTTTCTGTGAGACTAGAAGGAAGCTaGCTAGTGAAGAGGTTTCAT +
Preference number: 2 (lower is better)
Translates to: KVELLYGFIHINTLPLSVRLEGS*LVKRFH
Trigger: ATGAAACCTCTTCACTAGCCAGCTTCCTTCTAGTCT...CACAGAAAGGGGCAATGTGTTAATGTGTATGAAACCATAAAGCAATTCTACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp TCACACTGTGCAGTTGGGCTGGCCTCACATTTACAGTaGTCATTCTGCCTGAGCTGCATGTGTGCTGGGATC +
Preference number: 3 (lower is better)
Translates to: SHCAVGLASHLQ*SFCLSCMCAGI
Trigger: GATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAATGTGAGGCCAGCCCAACTGCACAGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp TTGGGCTGGCCTCACATTTACAGTGATCATTCTGCCTaGGCTGCATGTGTGCTGGGATCACAGGCATATTAT +
Preference number: 3 (lower is better)
Translates to: LGWPHIYSDHSA*AACVLGSQAYY
Trigger: ATAATATGCCTGTGATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAATGTGAGGCCAGCCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp ACAGGATCTCACTTTGTACTTCAGGCTGACCTCACATaGTTACACTGTGCAGTGAGCAAGGCTAACCTCTCA +
Preference number: 3 (lower is better)
Translates to: TGSHFVLQADLT*LHCAVSKANLS
Trigger: TGAGAGGTTAGCCTTGCTCACTGCACAGTGTAACCATGTGAGGTCAGCCTGAAGTACAAAGTGAGATCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp GTAGCAGGAAAGGCATATCAGCAGCAAAAAGAAGCCTaGGACAAAGTCTCTAGGGCTGTGAGTCTTCAGAGT +
Preference number: 3 (lower is better)
Translates to: VAGKAYQQQKEA*DKVSRAVSLQS
Trigger: ACTCTGAAGACTCACAGCCCTAGAGACTTTGTCCCAGGCTTCTTTTTGCTGCTGATATGCCTTTCCTGCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp TACTTCAGGCTGACCTCACATGGTTACACTGTGCAGTaGGCAAGGCTAACCTCTCATGGTTTCATTGTTCAG +
Preference number: 3 (lower is better)
Translates to: YFRLTSHGYTVQ*ARLTSHGFIVQ
Trigger: CTGAACAATGAAACCATGAGAGGTTAGCCTTGCTCACTGCACAGTGTAACCATGTGAGGTCAGCCTGAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CAA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCACAGTATTGCCTACTTaGATTCATGCACCAAGCCTC +
Preference number: 3 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPTVLPT*IHAPSL
Trigger: GAGGCTTGGTGCATGAATCAAAGTAGGCAATACTGT...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp TTTACAGTGATCATTCTGCCTGAGCTGCATGTGTGCTaGGATCACAGGCATATTATTATACCTGCCTTGATT +
Preference number: 3 (lower is better)
Translates to: FTVIILPELHVC*DHRHIIIPALI
Trigger: AATCAAGGCAGGTATAATAATATGCCTGTGATCCCAGCACACATGCAGCTCAGGCAGAATGATCACTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp TGGTTACACTGTGCAGTGAGCAAGGCTAACCTCTCATaGTTTCATTGTTCAGTGAAGATGAATTTACAGGGT +
Preference number: 3 (lower is better)
Translates to: WLHCAVSKANLS*FHCSVKMNLQG
Trigger: ACCCTGTAAATTCATCTTCACTGAACAATGAAACCATGAGAGGTTAGCCTTGCTCACTGCACAGTGTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR-3UTR CAA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCCATTTTGGCATTTCTTaGCATTACTCAGCAGAGCTT +
Preference number: 3 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPHFGIS*HYSAEL
Trigger: AAGCTCTGCTGAGTAATGCAAAGAAATGCCAAAATG...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp TATGAGAGGCTATTATCCACTTTTGTAAATGTGGTGTaGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: YERLLSTFVNVV*CVFVCVCVCVC
Trigger: ACACACACACACACACACACACACAAACACACACCACACCACATTTACAAAAGTGGATAATAGCCTCTCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp GAGTCTTCAGAGTACACCCATCACAGCCATGCTAAATaGTCAGCCTTATCCAGAAAATTTATTTGCTTGCTA +
Preference number: 3 (lower is better)
Translates to: ESSEYTHHSHAK*SALSRKFICLL
Trigger: TAGCAAGCAAATAAATTTTCTGGATAAGGCTGACCATTTAGCATGGCTGTGATGGGTGTACTCTGAAGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR GCA 72 bp AGAGAAGACTGTGTGGAAACAGAAGAGCTCAAGGTGTaGATATTTGTATTAATGATTACACAGATGCTCAAA +
Preference number: 3 (lower is better)
Translates to: REDCVETEELKV*IFVLMITQMLK
Trigger: TTTGAGCATCTGTGTAATCATTAATACAAATATGCACACCTTGAGCTCTTCTGTTTCCACACAGTCTTCTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp GTTGAAGACAGATATCAAAGACAGTATTGCCTACTTTaGTTCATGCACCAAGCCTCTTTTTGTTCATGTATT +
Preference number: 3 (lower is better)
Translates to: VEDRYQRQYCLL*FMHQASFCSCI
Trigger: AATACATGAACAAAAAGAGGCTTGGTGCATGAATCAAAGTAGGCAATACTGTCTTTGATATCTGTCTTCAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp ATGGTTTCATACACATTAACACATTGCCCCTTTCTGTaGGACAAGAAGTCATTTAACTTCATGATCTTCAGT +
Preference number: 3 (lower is better)
Translates to: MVSYTLTHCPFL*DKKSFNFMIFS
Trigger: ACTGAAGATCATGAAGTTAAATGACTTCTTGTCTCACAGAAAGGGGCAATGTGTTAATGTGTATGAAACCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR TCA 72 bp TTGAATCCTACAACTTGTTGTAGCTATGTGTCCAGGTaGACTACTTCTCATTCATATGATAACTTTATGGTC +
Preference number: 3 (lower is better)
Translates to: LNPTTCCSYVSR*TTSHSYDNFMV
Trigger: GACCATAAAGTTATCATATGAATGAGAAGTAGTTCACCTGGACACATAGCTACAACAAGTTGTAGGATTCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CCA 72 bp CCAGGTGAACTACTTCTCATTCATATGATAACTTTATaGTCAATAAACCACAAGTCCAACATCAATGTTTGG +
Preference number: 3 (lower is better)
Translates to: PGELLLIHMITL*SINHKSNINVW
Trigger: CCAAACATTGATGTTGGACTTGTGGTTTATTGACCATAAAGTTATCATATGAATGAGAAGTAGTTCACCTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR TCA 90 bp GTCATCTTCATGTTGATCAGCAGGAAATTTGTCCAAAAGAGTGGACTGATGCCCTTCCCAGGAGAGTGGTaGGGTACATGGCCAGGAGCA +
Preference number: 4 (lower is better)
Translates to: VIFMLISRKFVQKSGLMPFPGEW*GTWPGA
Trigger: TGCTCCTGGCCATGTACCTCACCACTCTCCTGGGAA...GGGCATCAGTCCACTCTTTTGGACAAATTTCCTGCTGATCAACATGAAGATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR CCA 90 bp ATGATGCTCCCTGAGCCTTGGAGAAGGGATGGTCCATATAAGATCCCATCTATGGTATGCAGCAGGGCATaGGATATTGTCAGCATCCAC +
Preference number: 4 (lower is better)
Translates to: MMLPEPWRRDGPYKIPSMVCSRA*DIVSIH
Trigger: GTGGATGCTGACAATATCCCATGCCCTGCTGCATAC...CATAGATGGGATCTTATATGGACCATCCCTTCTCCAAGGCTCAGGGAGCATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CAA 72 bp TCAGTGAAGATGAATTTACAGGGTCACACTGTGCAGTaGGGCTGGCCTCACATTTACAGTGATCATTCTGCC +
Preference number: 4 (lower is better)
Translates to: SVKMNLQGHTVQ*GWPHIYSDHSA
Trigger: GGCAGAATGATCACTGTAAATGTGAGGCCAGCCCAACTGCACAGTGTGACCCTGTAAATTCATCTTCACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CAA 72 bp ACTATTCATCTCAGTCTGACCTCACAGGATCTCACTTaGTACTTCAGGCTGACCTCACATGGTTACACTGTG +
Preference number: 4 (lower is better)
Translates to: TIHLSLTSQDLT*YFRLTSHGYTV
Trigger: CACAGTGTAACCATGTGAGGTCAGCCTGAAGTACAAAGTGAGATCCTGTGAGGTCAGACTGAGATGAATAGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR CCA 90 bp ATTTCAAGAAACAGGGTAAAGTATGAAGAGAAGACTGTGTGGAAACAGAAGAGCGATACTCTGATGAGATaGGCAGACCCAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: ISRNRVKYEEKTVWKQKSDTLMR*ADPGGG
Trigger: TCCTCCTCCTGGGTCTGCCCATCTCATCAGAGTATC...GCTCTTCTGTTTCCACACAGTCTTCTCTTCATACTTTACCCTGTTTCTTGAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR TCA 90 bp TGTTTATGCAAGTTAAGGAAGAAGTTGAAGACAGATATCAAAGACAGTATTGCCGGAGGAATTCCAAGATaGGAGTTTGGTTCTTTCCAG +
Preference number: 4 (lower is better)
Translates to: CLCKLRKKLKTDIKDSIAGGIPR*EFGSFQ
Trigger: CTGGAAAGAACCAAACTCTCATCTTGGAATTCCTCC...GGCAATACTGTCTTTGATATCTGTCTTCAACTTCTTCCTTAACTTGCATAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
3UTR CAA 72 bp TTTATGGTCAATAAACCACAAGTCCAACATCAATGTTaGGGAGTTTCATCCTACAAAGGGTCTCACTATTCA +
Preference number: 4 (lower is better)
Translates to: FMVNKPQVQHQC*GVSSYKGSHYS
Trigger: TGAATAGTGAGACCCTTTGTAGGATGAAACTCCCAAACATTGATGTTGGACTTGTGGTTTATTGACCATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR TCA 90 bp GAATTGCTTTATGGTTTCATACACATTAACACATTGCCCCTTTCTGTGAGACAAAAAATTTGGTGCTCATaGTGCTGGTATAATGCAAAG +
Preference number: 4 (lower is better)
Translates to: ELLYGFIHINTLPLSVRQKIWCS*CWYNAK
Trigger: CTTTGCATTATACCAGCATCATGAGCACCAAATTTT...TTGTCTCACAGAAAGGGGCAATGTGTTAATGTGTATGAAACCATAAAGCAATTC
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS-3UTR TCA 90 bp AAAGTAGAATTGCTTTATGGTTTCATACACATTAACACATTGCCCCTTTCTGTGATTAACATAAGTGTCTaGGCAGGACAACTTCAGAAG +
Preference number: 4 (lower is better)
Translates to: KVELLYGFIHINTLPLSVINISV*AGQLQK
Trigger: CTTCTGAAGTTGTCCTGCTCAGACACTTATGTTAAT...CACAGAAAGGGGCAATGTGTTAATGTGTATGAAACCATAAAGCAATTCTACTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS GCA 90 bp ATGACATTCTTCTCACAAAAAGACAATCTAGCCATGAGTAGGGTATaGAGCAGGGCATGGGATATTGTCAGCATCCACAGTAGTAGCACT +
Preference number: 5 (lower is better)
Translates to: MTFFSQKDNLAMSRV*SRAWDIVSIHSSST
Trigger: AGTGCTACTACTGTGGATGCTGACAATATCCCATGCCCTGCTGCATACCCTACTCATGGCTAGATTGTCTTTTTGTGAGAAGAATGTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072991.2
ENSMUST00000215690.2
CDS CCA 90 bp TCACAAAAAGACAATCTAGCCATGAGTAGGGTATGCAGCAGGGCATaGGATATTGTCAGCATCCACAGTAGTAGCACTAGTAAAGCACAA +
Preference number: 5 (lower is better)
Translates to: SQKDNLAMSRVCSRA*DIVSIHSSSTSKAQ
Trigger: TTGTGCTTTACTAGTGCTACTACTGTGGATGCTGACAATATCCCATGCCCTGCTGCATACCCTACTCATGGCTAGATTGTCTTTTTGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072991.2
ENSMUST00000215690.2
CDS-3UTR CAA 90 bp TTTAACTTCATGATCTTCAGTCTAAGGAACAGAATCTTCTCTACCTCTTTGAGAAGTAAAGCACAAAATTaGGTGCTCATGATGCTGGTA +
Preference number: 5 (lower is better)
Translates to: FNFMIFSLRNRIFSTSLRSKAQN*VLMMLV
Trigger: TACCAGCATCATGAGCACCAAATTTTGTGCTTTACT...TCTCAAAGAGGTAGAGAAGATTCTGTTCCTTAGACTGAAGATCATGAAGTTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215690.2
CDS GCA 72 bp TTCTCACAAAAAGACAATCTAGCCATGAGTAGGGTATaGAGCAGGGCATGGGATATTGTCAGCATCCACAGT +
Preference number: 6 (lower is better)
Translates to: FSQKDNLAMSRV*SRAWDIVSIHS
Trigger: ACTGTGGATGCTGACAATATCCCATGCCCTGCTGCATACCCTACTCATGGCTAGATTGTCTTTTTGTGAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072991.2
ENSMUST00000215690.2