Pregenerated sensors for OLFR39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059623Ensembl transcript IDs: ENSMUST00000071725.4, ENSMUST00000212983.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTCTAGCTGCATATATATCAAAAGATGGCCTAGCCGGCCATCACTaGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGT | + |
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Preference number: 1 (lower is better) Translates to: TLAAYISKDGLAGHH*KERPIGLANFICPS Trigger: ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR TCA 90 bp | TATCCTATTCCTTTATGTAGTTCCTGGGAATTGAACTCAGGTTGTTaGGCCTCCCTACCAGTTCTACAGTTAAAGTTAATTACAAATTTT | + |
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Preference number: 1 (lower is better) Translates to: YPIPLCSSWELNSGC*ASLPVLQLKLITNF Trigger: AAAATTTGTAATTAACTTTAACTGTAGAACTGGTAGGGAGGCTCAACAACCTGAGTTCAATTCCCAGGAACTACATAAAGGAATAGGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR-3UTR TCA 90 bp | TCACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACTTGAACTCAGGTTGTTaGGCCTCCCTACCAGTTCTA | + |
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Preference number: 2 (lower is better) Translates to: SPLPLFLPLPPPSLTHTDLNSGC*ASLPVL Trigger: TAGAACTGGTAGGGAGGCTCAACAACCTGAGTTCAA...GTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR-3UTR TCA 90 bp | TCACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACTTAGAGGACAACTTGTaGTGGTCCAATATCCTATTC | + |
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Preference number: 2 (lower is better) Translates to: SPLPLFLPLPPPSLTHTDLEDNL*WSNILF Trigger: GAATAGGATATTGGACCATCACAAGTTGTCCTCTAA...GTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR CCA 72 bp | TGGCCTAGCCGGCCATCACTGGAAAGAGAGGCCCATTaGACTTGCAAACTTTATATGCCCCAGTACAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: WPSRPSLEREAH*TCKLYMPQYRG Trigger: TCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGGCTAGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR CCA 72 bp | GGAGCTCTTGACTCTAGCTGCATATATATCAAAAGATaGCCTAGCCGGCCATCACTGGAAAGAGAGGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: GALDSSCIYIKR*PSRPSLEREAH Trigger: ATGGGCCTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR TCA 72 bp | TCCAATATCCTATTCCTTTATGTAGTTCCTGGGAATTaGACTCAGGTTGTTGAGCCTCCCTACCAGTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: SNILFLYVVPGN*TQVVEPPYQFY Trigger: GTAGAACTGGTAGGGAGGCTCAACAACCTGAGTTCAATTCCCAGGAACTACATAAAGGAATAGGATATTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| 3UTR TCA 72 bp | CCTTTATGTAGTTCCTGGGAATTGAACTCAGGTTGTTaGGCCTCCCTACCAGTTCTACAGTTAAAGTTAATT | + |
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Preference number: 3 (lower is better) Translates to: PLCSSWELNSGC*ASLPVLQLKLI Trigger: AATTAACTTTAACTGTAGAACTGGTAGGGAGGCTCAACAACCTGAGTTCAATTCCCAGGAACTACATAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR TCA 90 bp | ACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACACCAGTCCCAGCTGAACTaGGGTAAACCCCCAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TSPSLSPSPSPISHTHRHQSQLN*GKPPVL Trigger: CAGCACTGGGGGTTTACCTCAGTTCAGCTGGGACTG...GTGTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR TCA 90 bp | TCACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACAACATCAGTCCCAGCTaGACTGAGGTAAACCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SPLPLFLPLPPPSLTHTDNISPS*TEVNPQ Trigger: CTGGGGGTTTACCTCAGTTCAGCTGGGACTGATGTT...GTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR GCA 90 bp | ACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACACGAGAATATCAGAGCTTaGTACTCTGAGAATTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: TSPSLSPSPSPISHTHRHENIRA*YSENLS Trigger: GCTCAAATTCTCAGAGTAGCAAGCTCTGATATTCTC...GTGTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR TCA 90 bp | TCTAGCTGCATATATATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAGCAGAGCTTGCTACTCTaGGAATTTGAGCCAACTCAC | + |
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Preference number: 4 (lower is better) Translates to: SSCIYIKRWPSRPSLEREQSLLL*EFEPTH Trigger: GTGAGTTGGCTCAAATTCTCAGAGTAGCAAGCTCTG...CTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR TCA 90 bp | TCTAGCTGCATATATATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAGGCTATAGTGCTTCCTTaGGAAACATCAGTCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SSCIYIKRWPSRPSLEREAIVLP*ETSVPA Trigger: AGCTGGGACTGATGTTTCTCAAGGAAGCACTATAGC...CTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR CCA 90 bp | CAGAGGGCAACACACAGGCAACAAAGTGATGGTGTTTTGGGAGCAAGAAATGAACTCACAGAAGAAATGTaGGATTTCAGTACCCATGGA | + |
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Preference number: 4 (lower is better) Translates to: QRATHRQQSDGVLGARNELTEEM*DFSTHG Trigger: TCCATGGGTACTGAAATCCCACATTTCTTCTGTGAG...TTCATTTCTTGCTCCCAAAACACCATCACTTTGTTGCCTGTGTGTTGCCCTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR GCA 90 bp | TCTAGCTGCATATATATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAGCCGAAAAGAATAGGCTaGAATTTAGGATCATCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SSCIYIKRWPSRPSLEREPKRIG*NLGSSE Trigger: CTCAGATGATCCTAAATTGCAGCCTATTCTTTTCGG...CTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR CCA 90 bp | TCTAGCTGCATATATATCAAAAGATGGCCTAGCCGGCCATCACTGGAAAGAGAGGGATTTCAGTACCCATaGAAAAAGTTAATTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SSCIYIKRWPSRPSLEREGFQYP*KKLIAS Trigger: TGAAGCAATTAACTTTTTCCATGGGTACTGAAATCC...CTCTCTTTCCAGTGATGGCCGGCTAGGCCATCTTTTGATATATATGCAGCTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS-3UTR CAA 90 bp | ACCTCTCCCTCTCTTTCTCCCTCTCCCTCCCCCATCTCTCACACACACAGACACGGCTATAGTGCTTCCTaGAGAAACATCAGTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TSPSLSPSPSPISHTHRHGYSAS*RNISPS Trigger: GCTGGGACTGATGTTTCTCAAGGAAGCACTATAGCC...GTGTCTGTGTGTGTGAGAGATGGGGGAGGGAGAGGGAGAAAGAGAGGGAGAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000212983.3 |
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| CDS TCA 72 bp | GGCTATAGTGCTTCCTTGAGAAACATCAGTCCCAGCTaGACTGAGGTAAACCCCCAGTGCTGTACCATAAAA | + |
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Preference number: 6 (lower is better) Translates to: GYSASLRNISPS*TEVNPQCCTIK Trigger: TTTTATGGTACAGCACTGGGGGTTTACCTCAGTTCAGCTGGGACTGATGTTTCTCAAGGAAGCACTATAGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071725.4 ENSMUST00000212983.3 |
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| CDS TCA 72 bp | CCCATGGAAAAAGTTAATTGCTTCATTAATAGACTATaGAACAGGGAGACTGATAAAATGATAATCCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: PMEKVNCFINRL*NRETDKMIIQH Trigger: GTGCTGGATTATCATTTTATCAGTCTCCCTGTTTCATAGTCTATTAATGAAGCAATTAACTTTTTCCATGGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071725.4 ENSMUST00000212983.3 |
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