RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR355 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075380

Ensembl transcript IDs: ENSMUST00000100147.2, ENSMUST00000213574.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGGCTGGCCTCAAATTCACAAAGATTCTCCTGTCTCTGTCTTCTaGGTACCAGTATTAAAGTTGTGTACCACCACACCCTGCTTTGCT +
Preference number: 1 (lower is better)
Translates to: QGWPQIHKDSPVSVF*VPVLKLCTTTPCFA
Trigger: AGCAAAGCAGGGTGTGGTGGTACACAACTTTAATACTGGTACCCAGAAGACAGAGACAGGAGAATCTTTGTGAATTTGAGGCCAGCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR TCA 90 bp TGGTGGTGTCTGGGAAGACTTGGACCGGGGCAATGGGAATGGATTTaGTTTATACAAATTACATATGTGTGTGAACTTCCGAAGGAATGG +
Preference number: 1 (lower is better)
Translates to: WWCLGRLGPGQWEWI*FIQITYVCELPKEW
Trigger: CCATTCCTTCGGAAGTTCACACACATATGTAATTTGTATAAATCAAATCCATTCCCATTGCCCCGGTCCAAGTCTTCCCAGACACCACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 90 bp GTCAGAGGGCAAAGCATGAGTGAGTGTGGTTGCTCAGGTCTAAATTaGATATTTGTGTTACACTCCTTCTCCACATGGCTAAGAAATCAT +
Preference number: 1 (lower is better)
Translates to: VRGQSMSECGCSGLN*IFVLHSFSTWLRNH
Trigger: ATGATTTCTTAGCCATGTGGAGAAGGAGTGTAACACAAATATCCAATTTAGACCTGAGCAACCACACTCACTCATGCTTTGCCCTCTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 90 bp ATGACTCTACACCTTATATGTATAGGCATCACTGATTGGACTCAGTaGGTTATAAAAACAGGAAATGAGCTTAGGAATTGGTGGTGTCTG +
Preference number: 1 (lower is better)
Translates to: MTLHLICIGITDWTQ*VIKTGNELRNWWCL
Trigger: CAGACACCACCAATTCCTAAGCTCATTTCCTGTTTTTATAACCCACTGAGTCCAATCAGTGATGCCTATACATATAAGGTGTAGAGTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 90 bp CTCCAGAGAATGACTCTACACCTTATATGTATAGGCATCACTGATTaGACTCAGTGGGTTATAAAAACAGGAAATGAGCTTAGGAATTGG +
Preference number: 1 (lower is better)
Translates to: LQRMTLHLICIGITD*TQWVIKTGNELRNW
Trigger: CCAATTCCTAAGCTCATTTCCTGTTTTTATAACCCACTGAGTCCAATCAGTGATGCCTATACATATAAGGTGTAGAGTCATTCTCTGGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CAA 90 bp CACAAAGATTCTCCTGTCTCTGTCTTCTGGGTACCAGTATTAAAGTaGTGTACCACCACACCCTGCTTTGCTCCACACCTTGATCTTCCT +
Preference number: 2 (lower is better)
Translates to: HKDSPVSVFWVPVLK*CTTTPCFAPHLDLP
Trigger: AGGAAGATCAAGGTGTGGAGCAAAGCAGGGTGTGGTGGTACACAACTTTAATACTGGTACCCAGAAGACAGAGACAGGAGAATCTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR TCA 90 bp CCTTACCCAAGCACTATTCACATGCATATCCATCTTGTTCCACATCTTTCTTCCCTTTGCTCCACACCTTaGTCTTCCTCAAGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: PYPSTIHMHIHLVPHLSSLCSTP*SSSRQQ
Trigger: TTGCTGCCTTGAGGAAGATCAAGGTGTGGAGCAAAG...GGAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CCA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATGGAATTGGTGGTGTCTaGGAAGACTTGGACCGGGGC +
Preference number: 2 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYGIGGV*EDLDRG
Trigger: GCCCCGGTCCAAGTCTTCCCAGACACCACCAATTCC...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CCA 90 bp TATAAAACAGTGTATTCCAGACATAAGAAAGCTACTGAACTCATGAACCCACAGGTGTCTGGGAAGACTTaGACCGGGGCAATGGGAATG +
Preference number: 2 (lower is better)
Translates to: YKTVYSRHKKATELMNPQVSGKT*TGAMGM
Trigger: CATTCCCATTGCCCCGGTCCAAGTCTTCCCAGACAC...CTGTGGGTTCATGAGTTCAGTAGCTTTCTTATGTCTGGAATACACTGTTTTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR GCA 90 bp AGTGTGTTAAATGTTTTCAGATACACAAGCACTTGGTGTCTTGAATGCTCATTTAAGTGCTCTGCTTTGTaGTCCCTCCCTTACCCAAGC +
Preference number: 2 (lower is better)
Translates to: SVLNVFRYTSTWCLECSFKCSAL*SLPYPS
Trigger: GCTTGGGTAAGGGAGGGAGCACAAAGCAGAGCACTT...AAATGAGCATTCAAGACACCAAGTGCTTGTGTATCTGAAAACATTTAACACACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR GCA 90 bp TATAAAACAGTGTATTCCAGACATAAGAAAGCTACTGAACTCATGAACCCACAGACAAGAAAGCATAAGTaGTCTGCTTTGTGCTCCCTC +
Preference number: 2 (lower is better)
Translates to: YKTVYSRHKKATELMNPQTRKHK*SALCSL
Trigger: GAGGGAGCACAAAGCAGAGCACTTATGCTTTCTTGT...CTGTGGGTTCATGAGTTCAGTAGCTTTCTTATGTCTGGAATACACTGTTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR TCA 90 bp CCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATCCAAGCACTTGGTGTCTTaGATGCTCATTTTCAGTTGC +
Preference number: 2 (lower is better)
Translates to: PYLFESIFFRDVVSDRLSKHLVS*MLIFSC
Trigger: GCAACTGAAAATGAGCATTCAAGACACCAAGTGCTT...GGATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CCA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATAATGAGCTTAGGAATTaGTGGTGTCTGGGAAGACTT +
Preference number: 2 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYNELRN*WCLGRL
Trigger: AAGTCTTCCCAGACACCACCAATTCCTAAGCTCATT...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR TCA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATACAAATGCTAACCTCTaGCACTGTTTACTAAGAACA +
Preference number: 2 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYTNANL*HCLLRT
Trigger: TGTTCTTAGTAAACAGTGTCAGAGGTTAGCATTTGT...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR GCA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATACTTGGTGTCTTGAATaGTCATTTTCAGTTGCTAAT +
Preference number: 2 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYTWCLE*SFSVAN
Trigger: ATTAGCAACTGAAAATGAGCATTCAAGACACCAAGT...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR GCA 72 bp TGGGTACCAGTATTAAAGTTGTGTACCACCACACCCTaGTTTGCTCCACACCTTGATCTTCCTCAAGGCAGC +
Preference number: 3 (lower is better)
Translates to: WVPVLKLCTTTP*FAPHLDLPQGS
Trigger: GCTGCCTTGAGGAAGATCAAGGTGTGGAGCAAAGCAGGGTGTGGTGGTACACAACTTTAATACTGGTACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CAA 90 bp TGCTACTTACTATGTACCCAAGGCTGGCCTCAAATTCACAAAGATTCTCCTGTCCCACCACACCCTGCTTaGCTCCACACCTTGATCTTC +
Preference number: 3 (lower is better)
Translates to: CYLLCTQGWPQIHKDSPVPPHPA*LHTLIF
Trigger: GAAGATCAAGGTGTGGAGCAAAGCAGGGTGTGGTGG...GACAGGAGAATCTTTGTGAATTTGAGGCCAGCCTTGGGTACATAGTAAGTAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 72 bp TGGGTTATAAAAACAGGAAATGAGCTTAGGAATTGGTaGTGTCTGGGAAGACTTGGACCGGGGCAATGGGAA +
Preference number: 3 (lower is better)
Translates to: WVIKTGNELRNW*CLGRLGPGQWE
Trigger: TTCCCATTGCCCCGGTCCAAGTCTTCCCAGACACCACCAATTCCTAAGCTCATTTCCTGTTTTTATAACCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR GCA 72 bp CTTTGTGCTCCCTCCCTTACCCAAGCACTATTCACATaGATATCCATCTTGTTCCACATCTTTCTTCCTCTT +
Preference number: 3 (lower is better)
Translates to: LCAPSLTQALFT*ISILFHIFLPL
Trigger: AAGAGGAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGGGAGGGAGCACAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 72 bp CCTCAAATTCACAAAGATTCTCCTGTCTCTGTCTTCTaGGTACCAGTATTAAAGTTGTGTACCACCACACCC +
Preference number: 3 (lower is better)
Translates to: PQIHKDSPVSVF*VPVLKLCTTTP
Trigger: GGGTGTGGTGGTACACAACTTTAATACTGGTACCCAGAAGACAGAGACAGGAGAATCTTTGTGAATTTGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CAA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATGCTTTGCTCCACACCTaGATCTTCCTCAAGGCAGCA +
Preference number: 3 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYALLHT*IFLKAA
Trigger: TGCTGCCTTGAGGAAGATCAAGGTGTGGAGCAAAGC...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR TCA 72 bp CTGGGAAGACTTGGACCGGGGCAATGGGAATGGATTTaGTTTATACAAATTACATATGTGTGTGAACTTCCG +
Preference number: 3 (lower is better)
Translates to: LGRLGPGQWEWI*FIQITYVCELP
Trigger: CGGAAGTTCACACACATATGTAATTTGTATAAATCAAATCCATTCCCATTGCCCCGGTCCAAGTCTTCCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 72 bp CAAAGCATGAGTGAGTGTGGTTGCTCAGGTCTAAATTaGATATTTGTGTTACACTCCTTCTCCACATGGCTA +
Preference number: 3 (lower is better)
Translates to: QSMSECGCSGLN*IFVLHSFSTWL
Trigger: TAGCCATGTGGAGAAGGAGTGTAACACAAATATCCAATTTAGACCTGAGCAACCACACTCACTCATGCTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR-3UTR CAA 90 bp CCTTACCCAAGCACTATTCACATGCATATCCATCTTGTTCCACATCTTTCTTCCCTGCTATTTTACCTGTaGAATCTGAGGTTCACAGAA +
Preference number: 3 (lower is better)
Translates to: PYPSTIHMHIHLVPHLSSLLFYL*NLRFTE
Trigger: TTCTGTGAACCTCAGATTCAACAGGTAAAATAGCAG...GGAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 72 bp CACCTTATATGTATAGGCATCACTGATTGGACTCAGTaGGTTATAAAAACAGGAAATGAGCTTAGGAATTGG +
Preference number: 3 (lower is better)
Translates to: HLICIGITDWTQ*VIKTGNELRNW
Trigger: CCAATTCCTAAGCTCATTTCCTGTTTTTATAACCCACTGAGTCCAATCAGTGATGCCTATACATATAAGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CCA 72 bp ATGACTCTACACCTTATATGTATAGGCATCACTGATTaGACTCAGTGGGTTATAAAAACAGGAAATGAGCTT +
Preference number: 3 (lower is better)
Translates to: MTLHLICIGITD*TQWVIKTGNEL
Trigger: AAGCTCATTTCCTGTTTTTATAACCCACTGAGTCCAATCAGTGATGCCTATACATATAAGGTGTAGAGTCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR TCA 72 bp CTCTTAAGACATGATTTGACACTTCTAATTCTATCTTaGGTTAATCAAGTTATCTGCCTGAAGCTAGTGTGT +
Preference number: 3 (lower is better)
Translates to: LLRHDLTLLILS*VNQVICLKLVC
Trigger: ACACACTAGCTTCAGGCAGATAACTTGATTAACTCAAGATAGAATTAGAAGTGTCAAATCATGTCTTAAGAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CAA 72 bp TCTCCTGTCTCTGTCTTCTGGGTACCAGTATTAAAGTaGTGTACCACCACACCCTGCTTTGCTCCACACCTT +
Preference number: 4 (lower is better)
Translates to: SPVSVFWVPVLK*CTTTPCFAPHL
Trigger: AAGGTGTGGAGCAAAGCAGGGTGTGGTGGTACACAACTTTAATACTGGTACCCAGAAGACAGAGACAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR GCA 90 bp TGCTACTTACTATGTACCCAAGGCTGGCCTCAAATTCACAAAGATTCTCCTGTCAAGTGGAAAAGGCTTTaGGTTTCCCAGCAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: CYLLCTQGWPQIHKDSPVKWKRL*VSQQQK
Trigger: CTTCTGCTGCTGGGAAACGCAAAGCCTTTTCCACTT...GACAGGAGAATCTTTGTGAATTTGAGGCCAGCCTTGGGTACATAGTAAGTAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
3UTR CAA 72 bp GAAATGAGCTTAGGAATTGGTGGTGTCTGGGAAGACTaGGACCGGGGCAATGGGAATGGATTTGATTTATAC +
Preference number: 4 (lower is better)
Translates to: EMSLGIGGVWED*DRGNGNGFDLY
Trigger: GTATAAATCAAATCCATTCCCATTGCCCCGGTCCAAGTCTTCCCAGACACCACCAATTCCTAAGCTCATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR TCA 90 bp CCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATCCATGGGAGTATGGAGATaGGGGTCAGAACGGATGGCC +
Preference number: 4 (lower is better)
Translates to: PYLFESIFFRDVVSDRLSMGVWR*GSERMA
Trigger: GGCCATCCGTTCTGACCCTCATCTCCATACTCCCAT...GGATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR TCA 90 bp CCCTTACCCAAGCACTATTCACATGCATATCCATCTTGTTCCACATCTTTCTTCATTTTAACAGAGGACTaGGGTCACAGAGGAAATGGT +
Preference number: 4 (lower is better)
Translates to: PLPKHYSHAYPSCSTSFFILTED*GHRGNG
Trigger: ACCATTTCCTCTGTGACCTCAGTCCTCTGTTAAAAT...GAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR CCA 90 bp CCCTTACCCAAGCACTATTCACATGCATATCCATCTTGTTCCACATCTTTCTTCAAAAGTGAATGGAAGTaGGGAAAGGAGCAAGAGAAG +
Preference number: 4 (lower is better)
Translates to: PLPKHYSHAYPSCSTSFFKSEWK*GKEQEK
Trigger: CTTCTCTTGCTCCTTTCCCCACTTCCATTCACTTTT...GAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR GCA 90 bp AGCTTGCTACTTACTATGTACCCAAGGCTGGCCTCAAATTCACAAAGATTCTCCTTAAGTAAAAGTGTGTaGAAAAGTGAATGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: SLLLTMYPRLASNSQRFSLSKSV*KSEWKW
Trigger: CCACTTCCATTCACTTTTGCACACACTTTTACTTAA...GGAGAATCTTTGTGAATTTGAGGCCAGCCTTGGGTACATAGTAAGTAGCAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR TCA 90 bp AGTGTGTTAAATGTTTTCAGATACACAAGCACTTGGTGTCTTGAATGCTCATTTCTATCACAATCTCATTaGCAAATGTGGAGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: SVLNVFRYTSTWCLECSFLSQSH*QMWRSR
Trigger: CCTGCTCCTCCACATTTGTCAATGAGATTGTGATAG...AAATGAGCATTCAAGACACCAAGTGCTTGTGTATCTGAAAACATTTAACACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR TCA 90 bp TATAAAACAGTGTATTCCAGACATAAGAAAGCTACTGAACTCATGAACCCACAGAGGGTTGAGCATAGATaGCAAAACTGTGTAGACAAT +
Preference number: 4 (lower is better)
Translates to: YKTVYSRHKKATELMNPQRVEHR*QNCVDN
Trigger: ATTGTCTACACAGTTTTGTCATCTATGCTCAACCCT...CTGTGGGTTCATGAGTTCAGTAGCTTTCTTATGTCTGGAATACACTGTTTTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR TCA 90 bp AGTGTGTTAAATGTTTTCAGATACACAAGCACTTGGTGTCTTGAATGCTCATTTTCACAGAGGAAATGGTaGATAACATTTGAGTCACAA +
Preference number: 4 (lower is better)
Translates to: SVLNVFRYTSTWCLECSFSQRKW*ITFESQ
Trigger: TTGTGACTCAAATGTTATTCACCATTTCCTCTGTGA...AAATGAGCATTCAAGACACCAAGTGCTTGTGTATCTGAAAACATTTAACACACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR GCA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATTGTGTAGACAATTGTTaGTATATGGTCTTTGACAGT +
Preference number: 4 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYCVDNC*YMVFDS
Trigger: ACTGTCAAAGACCATATAGCAACAATTGTCTACACA...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR CAA 90 bp AGCTTGCTACTTACTATGTACCCAAGGCTGGCCTCAAATTCACAAAGATTCTCCGATAAACAGTGGTTTTaGGTCCTCAGGCCGAGGGGA +
Preference number: 5 (lower is better)
Translates to: SLLLTMYPRLASNSQRFSDKQWF*VLRPRG
Trigger: TCCCCTCGGCCTGAGGACCAAAAACCACTGTTTATC...GGAGAATCTTTGTGAATTTGAGGCCAGCCTTGGGTACATAGTAAGTAGCAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR CAA 90 bp CCTTACCCAAGCACTATTCACATGCATATCCATCTTGTTCCACATCTTTCTTCCCAAGTGGAAAAGGCTTaGCGTTTCCCAGCAGCAGAA +
Preference number: 5 (lower is better)
Translates to: PYPSTIHMHIHLVPHLSSQVEKA*RFPAAE
Trigger: TTCTGCTGCTGGGAAACGCAAAGCCTTTTCCACTTG...GGAAGAAAGATGTGGAACAAGATGGATATGCATGTGAATAGTGCTTGGGTAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR CAA 90 bp AGCTTGCTACTTACTATGTACCCAAGGCTGGCCTCAAATTCACAAAGATTCTCCATAGAGAAAATACATTaGTGTCAGACACCCTGCATA +
Preference number: 5 (lower is better)
Translates to: SLLLTMYPRLASNSQRFSIEKIH*CQTPCI
Trigger: TATGCAGGGTGTCTGACACAAATGTATTTTCTCTAT...GGAGAATCTTTGTGAATTTGAGGCCAGCCTTGGGTACATAGTAAGTAGCAAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS-3UTR CAA 90 bp CCCCATATCTGTTTGAGTCTATTTTCTTTAGGGATGTGGTTTCTGATAGGTTATACTATCACAATCTCATaGACAAATGTGGAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: PHICLSLFSLGMWFLIGYTITIS*TNVEEQ
Trigger: CTGCTCCTCCACATTTGTCAATGAGATTGTGATAGT...ATAACCTATCAGAAACCACATCCCTAAAGAAAATAGACTCAAACAGATATGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000213574.2
CDS CAA 72 bp CAGGTAAATTGTGAGGAAGAGGATAAACAGTGGTTTTaGGTCCTCAGGCCGAGGGGACAGTCCCAGGAGTAT +
Preference number: 6 (lower is better)
Translates to: QVNCEEEDKQWF*VLRPRGQSQEY
Trigger: ATACTCCTGGGACTGTCCCCTCGGCCTGAGGACCAAAAACCACTGTTTATCCTCTTCCTCACAATTTACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100147.2
ENSMUST00000213574.2
CDS TCA 72 bp AAACAAGAGCTCCTTCTGTCACTATCACAATCTCATTaGCAAATGTGGAGGAGCAGGATAATTTTAACAGAG +
Preference number: 6 (lower is better)
Translates to: KQELLLSLSQSH*QMWRSRIILTE
Trigger: CTCTGTTAAAATTATCCTGCTCCTCCACATTTGTCAATGAGATTGTGATAGTGACAGAAGGAGCTCTTGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100147.2
ENSMUST00000213574.2
CDS CAA 72 bp AAAACAAGAGCTCCTTCTGTCACTATCACAATCTCATaGACAAATGTGGAGGAGCAGGATAATTTTAACAGA +
Preference number: 6 (lower is better)
Translates to: KTRAPSVTITIS*TNVEEQDNFNR
Trigger: TCTGTTAAAATTATCCTGCTCCTCCACATTTGTCAATGAGATTGTGATAGTGACAGAAGGAGCTCTTGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100147.2
ENSMUST00000213574.2