RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR348 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049315

Ensembl transcript IDs: ENSMUST00000056865.2, ENSMUST00000213498.2, ENSMUST00000214909.3, ENSMUST00000215199.2

Found 129 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATACTGCTCCATCTAGCTCAGGAAGTGTTATGGCTGGCAAGGGGCTaGACCAGCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTAC +
Preference number: 1 (lower is better)
Translates to: ILLHLAQEVLWLARG*TSSSAFMSSGQVTY
Trigger: GTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGCTGGTTCAGCCCCTTGCCAGCCATAACACTTCCTGAGCTAGATGGAGCAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR GCA 90 bp GTCCATTGCAATGAGTCATTGGTCTGGTTCAAGGTCTCTGGCTTCTaGTACACTATCAATACTGGATTCTCACTGGGACTCCTCTCAAGA +
Preference number: 1 (lower is better)
Translates to: VHCNESLVWFKVSGF*YTINTGFSLGLLSR
Trigger: TCTTGAGAGGAGTCCCAGTGAGAATCCAGTATTGATAGTGTAGCAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATTGCAATGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR GCA 90 bp TCTTTCCCATTTCTCTACCACATAAATTGTAATGCAGGTTGGCCATaGAGTTGTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCC +
Preference number: 1 (lower is better)
Translates to: SFPFLYHINCNAGWP*SCGPISLCLPSSHA
Trigger: GGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCACAACTGCATGGCCAACCTGCATTACAATTTATGTGGTAGAGAAATGGGAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 90 bp CACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTCTaGTTCAAGGTCTCTGGCTTCTGCTACACTATCAATACTGGATTC +
Preference number: 1 (lower is better)
Translates to: HTSLLANVHCNESLV*FKVSGFCYTINTGF
Trigger: GAATCCAGTATTGATAGTGTAGCAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 90 bp TTTGTCTGTTGTGTCCTTTTACAGAAAGCCAATCTTGTTTCAATATaGGAACAGGCCCAGACGCTTAGAGGGAAAAAGTTATGTACTAGC +
Preference number: 1 (lower is better)
Translates to: FVCCVLLQKANLVSI*EQAQTLRGKKLCTS
Trigger: GCTAGTACATAACTTTTTCCCTCTAAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATTGGCTTTCTGTAAAAGGACACAACAGACAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCACTATGGACCCAGACATaGCTCTCAGCATGGTCCAGG +
Preference number: 2 (lower is better)
Translates to: ALLLSCPQARSPTPTSPALWTQT*LSAWSR
Trigger: CCTGGACCATGCTGAGAGCCATGTCTGGGTCCATAG...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTCTATGGACCCAGACATaGCTCTCAGCATGGTCCAGG +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFLWTQT*LSAWSR
Trigger: CCTGGACCATGCTGAGAGCCATGTCTGGGTCCATAG...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTCCACACTCATACCCTTaGGGCCAGTTTACCACCACC +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFPHSYP*GQFTTT
Trigger: GGTGGTGGTAAACTGGCCCCAAGGGTATGAGTGTGG...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTGAGTGCTGCAGCTACTaGGAAGCAGGGGCACCTCTG +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTECCSY*EAGAPL
Trigger: CAGAGGTGCCCCTGCTTCTCAGTAGCTGCAGCACTC...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAGGGTCAGATCTTCTGTaGTACCCAGGTATGATACGA +
Preference number: 2 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAGSDLL*YPGMIR
Trigger: TCGTATCATACCTGGGTATCACAGAAGATCTGACCC...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTCACAGGGATTCAACTTaGCCAGGACCTAGAGATCTC +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFHRDST*PGPRDL
Trigger: GAGATCTCTAGGTCCTGGGCAAGTTGAATCCCTGTG...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTGACTTTCTGACATCCTaGCAGCTACTCCTCAGCTCA +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFDFLTS*QLLLSS
Trigger: TGAGCTGAGGAGTAGCTGGCAGGATGTCAGAAAGTC...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAACATGGCTCTCAGCATaGTCCAGGATTTTACCCATG +
Preference number: 2 (lower is better)
Translates to: ALLLSCPQARSPTPTSPATWLSA*SRILPM
Trigger: CATGGGTAAAATCCTGGACCATGCTGAGAGCCATGT...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGCCACACTCATACCCTTaGGGCCAGTTTACCACCACC +
Preference number: 2 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARPHSYP*GQFTTT
Trigger: GGTGGTGGTAAACTGGCCCCAAGGGTATGAGTGTGG...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTACATGGCTCTCAGCATaGTCCAGGATTTTACCCATG +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFTWLSA*SRILPM
Trigger: CATGGGTAAAATCCTGGACCATGCTGAGAGCCATGT...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTAATCTTGTTTCAATATaGGAACAGGCCCAGACGCTT +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFNLVSI*EQAQTL
Trigger: AAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATT...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTGACTTTCTGACATCCTaGCAGCTACTCCTCAGCTCA +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTDFLTS*QLLLSS
Trigger: TGAGCTGAGGAGTAGCTGGCAGGATGTCAGAAAGTC...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTGGAATCAATTCAGATTaGCTAGACTTTCTGACATCC +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFGINSD*LDFLTS
Trigger: GGATGTCAGAAAGTCTAGGCAATCTGAATTGATTCC...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGTTGGCCATGCAGTTGTaGACCAATCTCTTTGTGTCT +
Preference number: 2 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARLAMQL*TNLFVS
Trigger: AGACACAAAGAGATTGGTCCACAACTGCATGGCCAA...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGCTATGGACCCAGACATaGCTCTCAGCATGGTCCAGG +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWLWTQT*LSAWSR
Trigger: CCTGGACCATGCTGAGAGCCATGTCTGGGTCCATAG...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAATGAGGACATTAAATTaGAATTCTGGGAAAAGGGTT +
Preference number: 2 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAMRTLN*NSGKRV
Trigger: AACCCTTTTCCCAGAATTGCAATTTAATGTCCTCAT...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAATAAAGCACAGAGTATaGACAATCAGAACATTCTCT +
Preference number: 2 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAIKHRV*TIRTFS
Trigger: AGAGAATGTTCTGATTGTGCATACTCTGTGCTTTAT...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTAGTAATACATTTGTGTaGAGGGCAGAGACTTATCTT +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFSNTFV*RAETYL
Trigger: AAGATAAGTCTCTGCCCTCCACACAAATGTATTACT...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTACATGGCTCTCAGCATaGTCCAGGATTTTACCCATG +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTTWLSA*SRILPM
Trigger: CATGGGTAAAATCCTGGACCATGCTGAGAGCCATGT...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTCTCTGGAATGATTTaGGAATATCGCTCACCACTG +
Preference number: 2 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDFSGMI*EYRSPL
Trigger: CAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAA...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGCACAGGGATTCAACTTaGCCAGGACCTAGAGATCTC +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWHRDST*PGPRDL
Trigger: GAGATCTCTAGGTCCTGGGCAAGTTGAATCCCTGTG...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTATAAAGCACAGAGTATaGACAATCAGAACATTCTCT +
Preference number: 2 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFIKHRV*TIRTFS
Trigger: AGAGAATGTTCTGATTGTGCATACTCTGTGCTTTAT...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTTCTTCCTTCTTCCCATaGCATGTGATGGAGAGGATT +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTSSFFP*HVMERI
Trigger: AATCCTCTCCATCACATGGCATGGGAAGAAGGAAGA...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGCCAGCACTTTTATGCTaGCAAGGTGAGGTTTGGACC +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWPALLC*QGEVWT
Trigger: GGTCCAAACCTCACCTTGGCAGCATAAAAGTGCTGG...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGTACATCTCAGCACGTTaGAATCAATTCAGATTGCCT +
Preference number: 2 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARYISAR*NQFRLP
Trigger: AGGCAATCTGAATTGATTCCAACGTGCTGAGATGTA...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGGCAGGTATTTTGGAGTaGCAAGGGGAAGCATCTCTC +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWAGILE*QGEASL
Trigger: GAGAGATGCTTCCCCTTGCCACTCCAAAATACCTGC...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTAATCTTGTTTCAATATaGGAACAGGCCCAGACGCTT +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPANLVSI*EQAQTL
Trigger: AAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTTTCTCTGGAATGATTTaGGAATATCGCTCACCACTG +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTFSGMI*EYRSPL
Trigger: CAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAA...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTATTTTGGTGGTAATATaGGGCACGGACATCAACACA +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAILVVI*GTDINT
Trigger: TGTGTTGATGTCCGTGCCTCATATTACCACCAAAAT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCCACAGGGATTCAACTTaGCCAGGACCTAGAGATCTC +
Preference number: 2 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFHRDST*PGPRDL
Trigger: GAGATCTCTAGGTCCTGGGCAAGTTGAATCCCTGTG...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTATCAACACAGAACCCTaGTGTTGCATAACTATGGAC +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAINTEP*CCITMD
Trigger: GTCCATAGTTATGCAACAGCAGGGTTCTGTGTTGAT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTACATCTCAGCACGTTaGAATCAATTCAGATTGCCT +
Preference number: 2 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDYISAR*NQFRLP
Trigger: AGGCAATCTGAATTGATTCCAACGTGCTGAGATGTA...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTGAAAAATTACTTCTaGTTACATGGTAGAGTGGCG +
Preference number: 2 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDLKNYF*LHGRVA
Trigger: CGCCACTCTACCATGTAATCAGAAGTAATTTTTCAA...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTATGTATTGTAAAGTATaGCAGACAATGCCCCGAATC +
Preference number: 2 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTMYCKV*QTMPRI
Trigger: GATTCGGGGCATTGTCTGGCATACTTTACAATACAT...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTATGTATTGTAAAGTATaGCAGACAATGCCCCGAATC +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAMYCKV*QTMPRI
Trigger: GATTCGGGGCATTGTCTGGCATACTTTACAATACAT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTGGAATCAATTCAGATTaGCTAGACTTTCTGACATCC +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAGINSD*LDFLTS
Trigger: GGATGTCAGAAAGTCTAGGCAATCTGAATTGATTCC...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTTGGCCATGCAGTTGTaGACCAATCTCTTTGTGTCT +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWLAMQL*TNLFVS
Trigger: AGACACAAAGAGATTGGTCCACAACTGCATGGCCAA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGATACTGGATTCTCACTaGGACTCCTCTCAAGACATC +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWILDSH*DSSQDI
Trigger: GATGTCTTGAGAGGAGTCCCAGTGAGAATCCAGTAT...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 90 bp CATAAAGCACAGAGTATGCACAATCAGAACATTCTCTGGAATGATTaGAGAATATCGCTCACCACTGTTTCACAGGGATTCAACTTGCCC +
Preference number: 2 (lower is better)
Translates to: HKAQSMHNQNILWND*RISLTTVSQGFNLP
Trigger: GGGCAAGTTGAATCCCTGTGAAACAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAATGTTCTGATTGTGCATACTCTGTGCTTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 90 bp TCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATaGGTCTGGTTCAAGGTCTCTGGCTTCTGCTACACTATCAATACT +
Preference number: 2 (lower is better)
Translates to: SVHTSLLANVHCNES*VWFKVSGFCYTINT
Trigger: AGTATTGATAGTGTAGCAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGAATCTTGTTTCAATATaGGAACAGGCCCAGACGCTT +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWNLVSI*EQAQTL
Trigger: AAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATT...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTTCTCTGGAATGATTTaGGAATATCGCTCACCACTG +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWFSGMI*EYRSPL
Trigger: CAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGATTCACACCATTGTATaGCAAACAAGGAGTATGGCC +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWIHTIV*QTRSMA
Trigger: GGCCATACTCCTTGTTTGTCATACAATGGTGTGAAT...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTAGGAATCAATTCAGATTaGCTAGACTTTCTGACATCC +
Preference number: 2 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLGINSD*LDFLTS
Trigger: GGATGTCAGAAAGTCTAGGCAATCTGAATTGATTCC...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCTCTTCCTTCTTCCCATaGCATGTGATGGAGAGGATT +
Preference number: 2 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFSSFFP*HVMERI
Trigger: AATCCTCTCCATCACATGGCATGGGAAGAAGGAAGA...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTTTCATACATGACAATTaGGTTACTGTACATCTCAGC +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAFIHDN*VTVHLS
Trigger: GCTGAGATGTACAGTAACCCAATTGTCATGTATGAA...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTAGTAATACATTTGTGTaGAGGGCAGAGACTTATCTT +
Preference number: 2 (lower is better)
Translates to: SISPSFTPLYDKQGVWPASNTFV*RAETYL
Trigger: AAGATAAGTCTCTGCCCTCCACACAAATGTATTACT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTACATCTCAGCACGTTaGAATCAATTCAGATTGCCT +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWYISAR*NQFRLP
Trigger: AGGCAATCTGAATTGATTCCAACGTGCTGAGATGTA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 90 bp TTTGATCCTGATTTGTCTGTTGTGTCCTTTTACAGAAAGCCAATCTaGTTTCAATATGAGAACAGGCCCAGACGCTTAGAGGGAAAAAGT +
Preference number: 2 (lower is better)
Translates to: FDPDLSVVSFYRKPI*FQYENRPRRLEGKS
Trigger: ACTTTTTCCCTCTAAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATTGGCTTTCTGTAAAAGGACACAACAGACAAATCAGGATCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR TCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTTGAAAAATTACTTCTaGTTACATGGTAGAGTGGCG +
Preference number: 2 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWLKNYF*LHGRVA
Trigger: CGCCACTCTACCATGTAATCAGAAGTAATTTTTCAA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCATGTATTGTAAAGTATaGCAGACAATGCCCCGAATC +
Preference number: 2 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFMYCKV*QTMPRI
Trigger: GATTCGGGGCATTGTCTGGCATACTTTACAATACAT...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CCA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCTTCATACATGACAATTaGGTTACTGTACATCTCAGC +
Preference number: 2 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFFIHDN*VTVHLS
Trigger: GCTGAGATGTACAGTAACCCAATTGTCATGTATGAA...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR GCA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCATGAGGACATTAAATTaGAATTCTGGGAAAAGGGTT +
Preference number: 2 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFMRTLN*NSGKRV
Trigger: AACCCTTTTCCCAGAATTGCAATTTAATGTCCTCAT...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR GCA 72 bp AGTGTTATGGCTGGCAAGGGGCTGAACCAGCTCTTCTaGTTTCATGTCCTCAGGCCAGGTCACCTACACCCA +
Preference number: 3 (lower is better)
Translates to: SVMAGKGLNQLF*FHVLRPGHLHP
Trigger: TGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGCTGGTTCAGCCCCTTGCCAGCCATAACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 72 bp CAAGGAGTATGGCCAGCTCTTCCACACTCATACCCTTaGGGCCAGTTTACCACCACCACCCCTTTCATGAGG +
Preference number: 3 (lower is better)
Translates to: QGVWPALPHSYP*GQFTTTTPFMR
Trigger: CCTCATGAAAGGGGTGGTGGTGGTAAACTGGCCCCAAGGGTATGAGTGTGGAAGAGCTGGCCATACTCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp CATCTAGCTCAGGAAGTGTTATGGCTGGCAAGGGGCTaGACCAGCTCTTCTGCTTTCATGTCCTCAGGCCAG +
Preference number: 3 (lower is better)
Translates to: HLAQEVLWLARG*TSSSAFMSSGQ
Trigger: CTGGCCTGAGGACATGAAAGCAGAAGAGCTGGTTCAGCCCCTTGCCAGCCATAACACTTCCTGAGCTAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTACAAGAGCAGGTATTTaGGAGTGGCAAGGGGAAGCA +
Preference number: 3 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFTRAGI*EWQGEA
Trigger: TGCTTCCCCTTGCCACTCCAAAATACCTGCTCTTGT...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 72 bp CCCTCATTCACACCATTGTATGACAAACAAGGAGTATaGCCAGCTCTTCCACACTCATACCCTTGGGGCCAG +
Preference number: 3 (lower is better)
Translates to: PSFTPLYDKQGV*PALPHSYPWGQ
Trigger: CTGGCCCCAAGGGTATGAGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAATTCTCTGGAATGATTaGAGAATATCGCTCACCACT +
Preference number: 3 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAILWND*RISLTT
Trigger: AGTGGTGAGCGATATTCTCAAATCATTCCAGAGAAT...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp AAGGGGAAGCATCTCTCCCTCATTCACACCATTGTATaGCAAACAAGGAGTATGGCCAGCTCTTCCACACTC +
Preference number: 3 (lower is better)
Translates to: KGKHLSLIHTIV*QTRSMASSSTL
Trigger: GAGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCTTCCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp TACACCCACATCACCAGCACTTTTATGCTGCCAAGGTaGGGTTTGGACCTGATTTCCCAAGTGCTGAAGCTT +
Preference number: 3 (lower is better)
Translates to: YTHITSTFMLPR*GLDLISQVLKL
Trigger: AAGCTTCAGCACTTGGGAAATCAGGTCCAAACCTCACCTTGGCAGCATAAAAGTGCTGGTGATGTGGGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp AAAAGCTCTGGATATGGGCCTGGGTGGTTGCTGAACTaGTTAGCTGACCAGTTCCCTGGCATTCATATCATC +
Preference number: 3 (lower is better)
Translates to: KSSGYGPGWLLN*LADQFPGIHII
Trigger: GATGATATGAATGCCAGGGAACTGGTCAGCTAATCAGTTCAGCAACCACCCAGGCCCATATCCAGAGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 72 bp GTTCAAGGTCTCTGGCTTCTGCTACACTATCAATACTaGATTCTCACTGGGACTCCTCTCAAGACATCCTGC +
Preference number: 3 (lower is better)
Translates to: VQGLWLLLHYQY*ILTGTPLKTSC
Trigger: GCAGGATGTCTTGAGAGGAGTCCCAGTGAGAATCCAGTATTGATAGTGTAGCAGAAGCCAGAGACCTTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCACAATTTGATCCTGATTaGTCTGTTGTGTCCTTTTAC +
Preference number: 3 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAQFDPD*SVVSFY
Trigger: GTAAAAGGACACAACAGACAAATCAGGATCAAATTG...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGTGTGGACCAATCTCTTaGTGTCTTCCTTCTTCCCAT +
Preference number: 3 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARCGPIS*CLPSSH
Trigger: ATGGGAAGAAGGAAGACACAAAGAGATTGGTCCACA...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTAGGTTGGCCATGCAGTaGTGGACCAATCTCTTTGTG +
Preference number: 3 (lower is better)
Translates to: SISPSFTPLYDKQGVWPARLAMQ*WTNLFV
Trigger: CACAAAGAGATTGGTCCACAACTGCATGGCCAACCT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTTGTGGACCAATCTCTTaGTGTCTTCCTTCTTCCCAT +
Preference number: 3 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTCGPIS*CLPSSH
Trigger: ATGGGAAGAAGGAAGACACAAAGAGATTGGTCCACA...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGAGGTTGGCCATGCAGTaGTGGACCAATCTCTTTGTG +
Preference number: 3 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWRLAMQ*WTNLFV
Trigger: CACAAAGAGATTGGTCCACAACTGCATGGCCAACCT...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR GCA 72 bp AATGAGTCATTGGTCTGGTTCAAGGTCTCTGGCTTCTaGTACACTATCAATACTGGATTCTCACTGGGACTC +
Preference number: 3 (lower is better)
Translates to: NESLVWFKVSGF*YTINTGFSLGL
Trigger: GAGTCCCAGTGAGAATCCAGTATTGATAGTGTAGCAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCAGGTTGGCCATGCAGTaGTGGACCAATCTCTTTGTG +
Preference number: 3 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFRLAMQ*WTNLFV
Trigger: CACAAAGAGATTGGTCCACAACTGCATGGCCAACCT...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp TGTCCACACATCTTTACTTGCAAATGTCCATTGCAATaGGTCATTGGTCTGGTTCAAGGTCTCTGGCTTCTG +
Preference number: 3 (lower is better)
Translates to: CPHIFTCKCPLQ*VIGLVQGLWLL
Trigger: CAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATAATGAGGACATTAAATaGCAATTCTGGGAAAAGGGT +
Preference number: 3 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDNEDIK*QFWEKG
Trigger: ACCCTTTTCCCAGAATTGCAATTTAATGTCCTCATT...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTATCCTGATTTGTCTGTaGTGTCCTTTTACAGAAAGC +
Preference number: 3 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAILICL*CPFTES
Trigger: GCTTTCTGTAAAAGGACACAACAGACAAATCAGGAT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTATTCTCTGGAATGATTaGAGAATATCGCTCACCACT +
Preference number: 3 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTILWND*RISLTT
Trigger: AGTGGTGAGCGATATTCTCAAATCATTCCAGAGAAT...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp AGCACAGAGTATGCACAATCAGAACATTCTCTGGAATaGTTTGAGAATATCGCTCACCACTGTTTCACAGGG +
Preference number: 3 (lower is better)
Translates to: STEYAQSEHSLE*FENIAHHCFTG
Trigger: CCCTGTGAAACAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAATGTTCTGATTGTGCATACTCTGTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTTACAGAAAGCCAATCTaGTTTCAATATGAGAACAGG +
Preference number: 3 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAYRKPI*FQYENR
Trigger: CCTGTTCTCATATTGAAACAAGATTGGCTTTCTGTA...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTTACAGAAAGCCAATCTaGTTTCAATATGAGAACAGG +
Preference number: 3 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTYRKPI*FQYENR
Trigger: CCTGTTCTCATATTGAAACAAGATTGGCTTTCTGTA...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTAATCCTGATTTGTCTGTaGTGTCCTTTTACAGAAAGC +
Preference number: 3 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLILICL*CPFTES
Trigger: GCTTTCTGTAAAAGGACACAACAGACAAATCAGGAT...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCAATTTGATCCTGATTaGTCTGTTGTGTCCTTTTAC +
Preference number: 3 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAQFDPD*SVVSFY
Trigger: GTAAAAGGACACAACAGACAAATCAGGATCAAATTG...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 72 bp TTCCCATTTCTCTACCACATAAATTGTAATGCAGGTTaGCCATGCAGTTGTGGACCAATCTCTTTGTGTCTT +
Preference number: 3 (lower is better)
Translates to: FPFLYHINCNAG*PCSCGPISLCL
Trigger: AAGACACAAAGAGATTGGTCCACAACTGCATGGCCAACCTGCATTACAATTTATGTGGTAGAGAAATGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CCA 72 bp TTACTTGCAAATGTCCATTGCAATGAGTCATTGGTCTaGTTCAAGGTCTCTGGCTTCTGCTACACTATCAAT +
Preference number: 3 (lower is better)
Translates to: LLANVHCNESLV*FKVSGFCYTIN
Trigger: ATTGATAGTGTAGCAGAAGCCAGAGACCTTGAACCAGACCAATGACTCATTGCAATGGACATTTGCAAGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTAAATGAGGACATTAAATaGCAATTCTGGGAAAAGGGT +
Preference number: 3 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLNEDIK*QFWEKG
Trigger: ACCCTTTTCCCAGAATTGCAATTTAATGTCCTCATT...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGCAATTTGATCCTGATTaGTCTGTTGTGTCCTTTTAC +
Preference number: 3 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWQFDPD*SVVSFY
Trigger: GTAAAAGGACACAACAGACAAATCAGGATCAAATTG...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCATTCTCTGGAATGATTaGAGAATATCGCTCACCACT +
Preference number: 3 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFILWND*RISLTT
Trigger: AGTGGTGAGCGATATTCTCAAATCATTCCAGAGAAT...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR TCA 72 bp AGAGTATGCACAATCAGAACATTCTCTGGAATGATTTaGGAATATCGCTCACCACTGTTTCACAGGGATTCA +
Preference number: 3 (lower is better)
Translates to: RVCTIRTFSGMI*EYRSPLFHRDS
Trigger: TGAATCCCTGTGAAACAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAATGTTCTGATTGTGCATACTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR-3UTR CAA 90 bp TCTGCTTCTATTCATAGTGCTCAAACCATTCCACCCATCTTTCTTTCCCATTTCAATGAGGACATTAAATaGCAATTCTGGGAAAAGGGT +
Preference number: 3 (lower is better)
Translates to: SASIHSAQTIPPIFLSHFNEDIK*QFWEKG
Trigger: ACCCTTTTCCCAGAATTGCAATTTAATGTCCTCATT...GAAATGGGAAAGAAAGATGGGTGGAATGGTTTGAGCACTATGAATAGAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR GCA 72 bp ATTAAAACTACATGTATTGTAAAGTATGCCAGACAATaGCCCGAATCACTAAGAAACAGCATTTCCCAGAGA +
Preference number: 3 (lower is better)
Translates to: IKTTCIVKYARQ*PESLRNSISQR
Trigger: TCTCTGGGAAATGCTGTTTCTTAGTGATTCGGGGCATTGTCTGGCATACTTTACAATACATGTAGTTTTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCACATGCCTTGCTCCTCTaGTTGGATGGGGAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAHALLL*LDGEPQ
Trigger: CTGGGGCTCCCCATCCAACCAGAGGAGCAAGGCATG...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGGGAGCCCCAGGAGGATaGACTCAGATGCACTGCTCT +
Preference number: 4 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARGAPGG*TQMHCS
Trigger: AGAGCAGTGCATCTGAGTTCATCCTCCTGGGGCTCC...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCCTTGCTCCTCTGGTTaGATGGGGAGCCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAPCSSG*MGSPRR
Trigger: CCTCCTGGGGCTCCCCATCCAACCAGAGGAGCAAGG...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATCATGCCTTGCTCCTCTaGTTGGATGGGGAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDHALLL*LDGEPQ
Trigger: CTGGGGCTCCCCATCCAACCAGAGGAGCAAGGCATG...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTACCTTGCTCCTCTGGTTaGATGGGGAGCCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLPCSSG*MGSPRR
Trigger: CCTCCTGGGGCTCCCCATCCAACCAGAGGAGCAAGG...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTCATGCCTTGCTCCTCTaGTTGGATGGGGAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTHALLL*LDGEPQ
Trigger: CTGGGGCTCCCCATCCAACCAGAGGAGCAAGGCATG...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAGCATCTTTGGAGCTGTaGCTGATGAGAAAGAGATGT +
Preference number: 4 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAASLEL*LMRKRC
Trigger: ACATCTCTTTCTCATCAGTCACAGCTCCAAAGATGC...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCATCACAGAAGAAGTGGTaGACAGTGTTACCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: ALLLSCPQARSPTPTSPASQKKW*TVLPLK
Trigger: CTTTAGAGGTAACACTGTCCACCACTTCTTCTGTGA...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 72 bp GTGGCAAGGGGAAGCATCTCTCCCTCATTCACACCATaGTATGACAAACAAGGAGTATGGCCAGCTCTTCCA +
Preference number: 4 (lower is better)
Translates to: VARGSISPSFTP*YDKQGVWPALP
Trigger: TGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCTTCCCCTTGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGGGAGCCCCAGGAGGATaGACTCAGATGCACTGCTCT +
Preference number: 4 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWGAPGG*TQMHCS
Trigger: AGAGCAGTGCATCTGAGTTCATCCTCCTGGGGCTCC...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCAGCATATGAGATGGATTaGCTGTGTATCAGCATATTC +
Preference number: 4 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAAYEMD*LCISIF
Trigger: GAATATGCTGATACACAGTCAATCCATCTCATATGC...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 72 bp AGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTaGGAGTGGCAAGGGGAAGCATCTCTCCCTCATTCA +
Preference number: 4 (lower is better)
Translates to: SSPTFMTTRAGI*EWQGEASLPHS
Trigger: TGAATGAGGGAGAGATGCTTCCCCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGGCATCTTTGGAGCTGTaGCTGATGAGAAAGAGATGT +
Preference number: 4 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARASLEL*LMRKRC
Trigger: ACATCTCTTTCTCATCAGTCACAGCTCCAAAGATGC...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTGCATATGAGATGGATTaGCTGTGTATCAGCATATTC +
Preference number: 4 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFAYEMD*LCISIF
Trigger: GAATATGCTGATACACAGTCAATCCATCTCATATGC...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTGGAAGAAGTTGCTCTTaGAAGCATATTTCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFGRSCS*KHISQS
Trigger: GCTTTGAGAAATATGCTTGCAAGAGCAACTTCTTCC...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTGCATCTTTGGAGCTGTaGCTGATGAGAAAGAGATGT +
Preference number: 4 (lower is better)
Translates to: SISPSFTPLYDKQGVWPAASLEL*LMRKRC
Trigger: ACATCTCTTTCTCATCAGTCACAGCTCCAAAGATGC...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATAGATACTCTGACTCATaGTTCTTGTATAGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDRYSDS*FLYSGG
Trigger: CCCTCCACTATACAAGAATCATGAGTCAGAGTATCT...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR GCA 90 bp GGACAGCTCTCCCACTTTTATGACCACAAGAGCAGGTATTTTGGAGTGGCAAGGGGAAGAAGTTGCTCTTaGAAGCATATTTCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: GQLSHFYDHKSRYFGVARGRSCS*KHISQS
Trigger: GCTTTGAGAAATATGCTTGCAAGAGCAACTTCTTCC...CCTTGCCACTCCAAAATACCTGCTCTTGTGGTCATAAAAGTGGGAGAGCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR GCA 90 bp CCTGATTTCCCAAGTGCTGAAGCTTATGAGGGGCAGGGACAGCTCTCCCACTTTTTACATGGAAGAAGTTaGTCTTGCAAGCATATTTCT +
Preference number: 4 (lower is better)
Translates to: PDFPSAEAYEGQGQLSHFLHGRS*SCKHIS
Trigger: AGAAATATGCTTGCAAGAGCAACTTCTTCCATGTAA...AAAGTGGGAGAGCTGTCCCTGCCCCTCATAAGCTTCAGCACTTGGGAAATCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTAGATACTCTGACTCATaGTTCTTGTATAGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTRYSDS*FLYSGG
Trigger: CCCTCCACTATACAAGAATCATGAGTCAGAGTATCT...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp AGCATCTCTCCCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTAGATACTCTGACTCATaGTTCTTGTATAGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: SISPSFTPLYDKQGVWPARYSDS*FLYSGG
Trigger: CCCTCCACTATACAAGAATCATGAGTCAGAGTATCT...AGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGGGAGAGATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp CCTCATTCACACCATTGTATGACAAACAAGGAGTATGGCCAGCTCTTCCACACTTCACAGAAGAAGTGGTaGACAGTGTTACCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: PHSHHCMTNKEYGQLFHTSQKKW*TVLPLK
Trigger: CTTTAGAGGTAACACTGTCCACCACTTCTTCTGTGA...AGTGTGGAAGAGCTGGCCATACTCCTTGTTTGTCATACAATGGTGTGAATGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR TCA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTAGCATATGAGATGGATTaGCTGTGTATCAGCATATTC +
Preference number: 4 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLAYEMD*LCISIF
Trigger: GAATATGCTGATACACAGTCAATCCATCTCATATGC...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR GCA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTACATGGAAGAAGTTaGTCTTGCAAGCATATTTCT +
Preference number: 4 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDLHGRS*SCKHIS
Trigger: AGAAATATGCTTGCAAGAGCAACTTCTTCCATGTAA...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CCA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTCACAGAAGAAGTGGTaGACAGTGTTACCTCTAAAG +
Preference number: 4 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWSQKKW*TVLPLK
Trigger: CTTTAGAGGTAACACTGTCCACCACTTCTTCTGTGA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 72 bp GATTTGTCTGTTGTGTCCTTTTACAGAAAGCCAATCTaGTTTCAATATGAGAACAGGCCCAGACGCTTAGAG +
Preference number: 4 (lower is better)
Translates to: DLSVVSFYRKPI*FQYENRPRRLE
Trigger: CTCTAAGCGTCTGGGCCTGTTCTCATATTGAAACAAGATTGGCTTTCTGTAAAAGGACACAACAGACAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
3UTR CAA 72 bp CAGAGTATGCACAATCAGAACATTCTCTGGAATGATTaGAGAATATCGCTCACCACTGTTTCACAGGGATTC +
Preference number: 4 (lower is better)
Translates to: QSMHNQNILWND*RISLTTVSQGF
Trigger: GAATCCCTGTGAAACAGTGGTGAGCGATATTCTCAAATCATTCCAGAGAATGTTCTGATTGTGCATACTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CAA 90 bp GCTCTTCTGCTTTCATGTCCTCAGGCCAGGTCACCTACACCCACATCACCAGCATGGAAGAAGTTGCTCTaGCAAGCATATTTCTCAAAG +
Preference number: 5 (lower is better)
Translates to: ALLLSCPQARSPTPTSPAWKKLL*QAYFSK
Trigger: CTTTGAGAAATATGCTTGCAAGAGCAACTTCTTCCA...TGCTGGTGATGTGGGTGTAGGTGACCTGGCCTGAGGACATGAAAGCAGAAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CAA 90 bp GTGGACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATCATGTGGACAAGGCTTaGCAAATTCCCTTGATGGAG +
Preference number: 5 (lower is better)
Translates to: VDQSLCVFLLPMPCDGEDHVDKA*QIPLME
Trigger: CTCCATCAAGGGAATTTGCAAAGCCTTGTCCACATG...ATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CAA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGCATGTGGACAAGGCTTaGCAAATTCCCTTGATGGAG +
Preference number: 5 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWHVDKA*QIPLME
Trigger: CTCCATCAAGGGAATTTGCAAAGCCTTGTCCACATG...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CAA 90 bp GACCAATCTCTTTGTGTCTTCCTTCTTCCCATGCCATGTGATGGAGAGGATTTATGGAAGAAGTTGCTCTaGCAAGCATATTTCTCAAAG +
Preference number: 5 (lower is better)
Translates to: DQSLCVFLLPMPCDGEDLWKKLL*QAYFSK
Trigger: CTTTGAGAAATATGCTTGCAAGAGCAACTTCTTCCA...TAAATCCTCTCCATCACATGGCATGGGAAGAAGGAAGACACAAAGAGATTGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS GCA 90 bp ACAGTGTTACCTCTAAAGAAAGAGAGACGAGCTAGAAGAATAGTGTaGACAAGGGCACCAGCAAATGATAAAAACCAGGATTCAATGACT +
Preference number: 5 (lower is better)
Translates to: TVLPLKKERRARRIV*TRAPANDKNQDSMT
Trigger: AGTCATTGAATCCTGGTTTTTATCATTTGCTGGTGCCCTTGTGCACACTATTCTTCTAGCTCGTCTCTCTTTCTTTAGAGGTAACACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000056865.2
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS CCA 90 bp GAGCTAGATAGCTTAATTAAGGCAGACAAGTCACAGAAGAAGTGGTaGACAGTGTTACCTCTAAAGAAAGAGAGACGAGCTAGAAGAATA +
Preference number: 5 (lower is better)
Translates to: ELDSLIKADKSQKKW*TVLPLKKERRARRI
Trigger: TATTCTTCTAGCTCGTCTCTCTTTCTTTAGAGGTAACACTGTCCACCACTTCTTCTGTGACTTGTCTGCCTTAATTAAGCTATCTAGCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056865.2
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS-3UTR CAA 90 bp ACCCTTCTGTCCACACATCTTTACTTGCAAATGTCCATTGCAATGAGTCATTGGTGGAAGAAGTTGCTCTaGCAAGCATATTTCTCAAAG +
Preference number: 5 (lower is better)
Translates to: TLLSTHLYLQMSIAMSHWWKKLL*QAYFSK
Trigger: CTTTGAGAAATATGCTTGCAAGAGCAACTTCTTCCA...CCAATGACTCATTGCAATGGACATTTGCAAGTAAAGATGTGTGGACAGAAGGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS GCA 72 bp CCTCTAAAGAAAGAGAGACGAGCTAGAAGAATAGTGTaGACAAGGGCACCAGCAAATGATAAAAACCAGGAT +
Preference number: 6 (lower is better)
Translates to: PLKKERRARRIV*TRAPANDKNQD
Trigger: ATCCTGGTTTTTATCATTTGCTGGTGCCCTTGTGCACACTATTCTTCTAGCTCGTCTCTCTTTCTTTAGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000056865.2
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS TCA 72 bp AACCAGAATGCATACAAATGGCACAGTAATGACCAATaGTCCTACAACAAGAATGACAAGCTCATTGATGGA +
Preference number: 6 (lower is better)
Translates to: NQNAYKWHSNDQ*SYNKNDKLIDG
Trigger: TCCATCAATGAGCTTGTCATTCTTGTTGTAGGATCATTGGTCATTACTGTGCCATTTGTATGCATTCTGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056865.2
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2
CDS CAA 72 bp ATGACCAATGATCCTACAACAAGAATGACAAGCTCATaGATGGAGGTATCTGAGCTAGATAGCTTAATTAAG +
Preference number: 6 (lower is better)
Translates to: MTNDPTTRMTSS*MEVSELDSLIK
Trigger: CTTAATTAAGCTATCTAGCTCAGATACCTCCATCAATGAGCTTGTCATTCTTGTTGTAGGATCATTGGTCAT
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000056865.2
ENSMUST00000213498.2
ENSMUST00000214909.3
ENSMUST00000215199.2