RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR332 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050813

Ensembl transcript IDs: ENSMUST00000180165.3

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCGAACCGCTACAGGCACCGTGGGGGATGATCATTGTTCCCTGCTaGAACCAGAACACGAAATGCATTTATATCAACACTACGATTGAC +
Preference number: 1 (lower is better)
Translates to: FEPLQAPWGMIIVPC*NQNTKCIYINTTID
Trigger: GTCAATCGTAGTGTTGATATAAATGCATTTCGTGTTCTGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAGCGGTTCGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR CCA 90 bp ATAAATAAATTTACTATAACTGCTCACACACTGGTTGAACTTTATTaGCTTACAGTGAATGCATACAGTGCCCGTAACAGCTGCTGGCTG +
Preference number: 1 (lower is better)
Translates to: INKFTITAHTLVELY*LTVNAYSARNSCWL
Trigger: CAGCCAGCAGCTGTTACGGGCACTGTATGCATTCACTGTAAGCCAATAAAGTTCAACCAGTGTGTGAGCAGTTATAGTAAATTTATTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR GCA 90 bp AGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTGCATAGATTaGTTCAAGGGACTAAGCGAGAGTAAAAATGTGAAAAGGAGATAC +
Preference number: 1 (lower is better)
Translates to: SDAFSQKKEGFNCID*FKGLSESKNVKRRY
Trigger: GTATCTCCTTTTCACATTTTTACTCTCGCTTAGTCCCTTGAAGCAATCTATGCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR TCA 90 bp GTTCGAACCGCTACAGGCACCGTGGGGGATGATCATTGTTCCCTGCTGGAACCACCCCAGAAAGCACACTaGGTATCATTTCTGTGCTGG +
Preference number: 2 (lower is better)
Translates to: VRTATGTVGDDHCSLLEPPQKAH*VSFLCW
Trigger: CCAGCACAGAAATGATACTCAGTGTGCTTTCTGGGG...TGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAGCGGTTCGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR TCA 90 bp GTTCGAACCGCTACAGGCACCGTGGGGGATGATCATTGTTCCCTGCTGGAACCAGGACTTGTGTCTCAATaGATTAGAAACCCTTCGCCT +
Preference number: 2 (lower is better)
Translates to: VRTATGTVGDDHCSLLEPGLVSQ*IRNPSP
Trigger: AGGCGAAGGGTTTCTAATTCATTGAGACACAAGTCC...TGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAGCGGTTCGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR TCA 90 bp GGGAACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACGCGAGAGTAAAAATGTaGAAAGGAGATACTAACAGG +
Preference number: 2 (lower is better)
Translates to: GNGLSGKEGRCLRMVTGHARVKM*KGDTNR
Trigger: CCTGTTAGTATCTCCTTTTCACATTTTTACTCTCGC...GTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR CCA 90 bp GGGAACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACACAGCAAATAGGTTCTaGACTTGTGTCTCAATGAAT +
Preference number: 2 (lower is better)
Translates to: GNGLSGKEGRCLRMVTGHTANRF*TCVSMN
Trigger: ATTCATTGAGACACAAGTCCAGAACCTATTTGCTGT...GTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR GCA 90 bp GGGAACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACGATAAATATAAAAGATaGACTAAGGGCTCACGGAAA +
Preference number: 2 (lower is better)
Translates to: GNGLSGKEGRCLRMVTGHDKYKR*TKGSRK
Trigger: TTTCCGTGAGCCCTTAGTGCATCTTTTATATTTATC...GTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR CCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACAACCGTGGGAGCCCCTaGGCTTCTAAAGTGAAAATT +
Preference number: 2 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYNRGSP*ASKVKI
Trigger: AATTTTCACTTTAGAAGCCCAGGGGCTCCCACGGTT...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR TCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACGTTATTTTTAAGAGGTaGTTGTGTGAGAAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYVIFKR*LCEKGP
Trigger: AGGCCCCTTCTCACACAATCACCTCTTAAAAATAAC...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR TCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACCTAACAGAAAGCATCTaGAATGATGACGATTTCGCT +
Preference number: 2 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYLTESI*NDDDFA
Trigger: AGCGAAATCGTCATCATTTCAGATGCTTTCTGTTAG...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR TCA 72 bp CTTAAGTGTTCGAACCGCTACAGGCACCGTGGGGGATaGTCATTGTTCCCTGCTGGAACCAGAACACGAAAT +
Preference number: 3 (lower is better)
Translates to: LKCSNRYRHRGG*SLFPAGTRTRN
Trigger: ATTTCGTGTTCTGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAGCGGTTCGAACACTTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR TCA 72 bp CTGCTCACACACTGGTTGAACTTTATTGGCTTACAGTaGATGCATACAGTGCCCGTAACAGCTGCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: LLTHWLNFIGLQ*MHTVPVTAAGW
Trigger: CCAGCCAGCAGCTGTTACGGGCACTGTATGCATTCACTGTAAGCCAATAAAGTTCAACCAGTGTGTGAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR TCA 72 bp TCTCCCGAAGATGAAGGTTTGCTAACATACATTTTGTaGCATAAAGCCACCTCAACCACGACACGAGCCTGG +
Preference number: 3 (lower is better)
Translates to: SPEDEGLLTYIL*HKATSTTTRAW
Trigger: CCAGGCTCGTGTCGTGGTTGAGGTGGCTTTATGTCACAAAATGTATGTTAGCAAACCTTCATCTTCGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR CCA 72 bp CTACAGGCACCGTGGGGGATGATCATTGTTCCCTGCTaGAACCAGAACACGAAATGCATTTATATCAACACT +
Preference number: 3 (lower is better)
Translates to: LQAPWGMIIVPC*NQNTKCIYINT
Trigger: AGTGTTGATATAAATGCATTTCGTGTTCTGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR-3UTR CAA 90 bp CTGCCCAGTGTGATCAGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTGCGCCGTGTGGATCAACTaGGGAAAGATAGAACAGCAA +
Preference number: 3 (lower is better)
Translates to: LPSVISDAFSQKKEGFNCAVWIN*GKIEQQ
Trigger: TTGCTGTTCTATCTTTCCCAAGTTGATCCACACGGC...GCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACTGATCACACTGGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR TCA 72 bp GATCAGGAGGGCAATTGTCACACACAAAGCTTTCCTTaGGACTGTATTCTTAAGTGTTCGAACCGCTACAGG +
Preference number: 3 (lower is better)
Translates to: DQEGNCHTQSFP*DCILKCSNRYR
Trigger: CCTGTAGCGGTTCGAACACTTAAGAATACAGTCTCAAGGAAAGCTTTGTGTGTGACAATTGCCCTCCTGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR GCA 72 bp AGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTaGATAGATTGCTTCAAGGGACTAAGCGAGAGTAAA +
Preference number: 3 (lower is better)
Translates to: SDAFSQKKEGFN*IDCFKGLSESK
Trigger: TTTACTCTCGCTTAGTCCCTTGAAGCAATCTATGCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR GCA 72 bp ATGATCATTGTTCCCTGCTGGAACCAGAACACGAAATaGATTTATATCAACACTACGATTGACATGCTAAAT +
Preference number: 3 (lower is better)
Translates to: MIIVPCWNQNTK*IYINTTIDMLN
Trigger: ATTTAGCATGTCAATCGTAGTGTTGATATAAATGCATTTCGTGTTCTGGTTCCAGCAGGGAACAATGATCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR GCA 72 bp GACTTGTGTCTCAATGAATTAGAAACCCTTCGCCTTTaGACAGATGTCATCGTAATTTTACAAATAAACACT +
Preference number: 3 (lower is better)
Translates to: DLCLNELETLRL*TDVIVILQINT
Trigger: AGTGTTTATTTGTAAAATTACGATGACATCTGTGCAAAGGCGAAGGGTTTCTAATTCATTGAGACACAAGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp GGGAACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACGGAGGTTTGGGTACCTaGAGCTGGGAAAGAGCCCCA +
Preference number: 4 (lower is better)
Translates to: GNGLSGKEGRCLRMVTGHGGLGT*SWERAP
Trigger: TGGGGCTCTTTCCCAGCTGCAGGTACCCAAACCTCC...GTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp GTTCGAACCGCTACAGGCACCGTGGGGGATGATCATTGTTCCCTGCTGGAACCAGGTATGAACGAGGGCTaGGGCAACTGCTCCGATCCA +
Preference number: 4 (lower is better)
Translates to: VRTATGTVGDDHCSLLEPGMNEG*GNCSDP
Trigger: TGGATCGGAGCAGTTGCCGCAGCCCTCGTTCATACC...TGGTTCCAGCAGGGAACAATGATCATCCCCCACGGTGCCTGTAGCGGTTCGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp GGGAACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACGAAGTAGTTGATGGCTaGCTTGGGCACTGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: GNGLSGKEGRCLRMVTGHEVVDG*LGHCAG
Trigger: TCCTGCACAGTGCCCAAGGCAGCCATCAACTACTTC...GTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR CCA 90 bp AACGGTCTGAGTGGAAAGGAGGGGCGGTGCTTAAGGATGGTCACTGGTCACGTTAGGAAAACATCTGAGTaGCACAGGCAAAGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: NGLSGKEGRCLRMVTGHVRKTSE*HRQRRR
Trigger: TCTCCTTCTTTGCCTGTGCCACTCAGATGTTTTCCT...AACGTGACCAGTGACCATCCTTAAGCACCGCCCCTCCTTTCCACTCAGACCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR CCA 90 bp CTGCCCAGTGTGATCAGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTGCTCCTGGTCGGGTGTGTaGGAAGAAGTGGGCGTCATG +
Preference number: 4 (lower is better)
Translates to: LPSVISDAFSQKKEGFNCSWSGV*EEVGVM
Trigger: CATGACGCCCACTTCTTCCCACACACCCGACCAGGA...GCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACTGATCACACTGGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp TTAAAGTCCCACACAGTAAATCCCATGTCACCATGTGATCTTTTCTCCCGAAGATGGGGGTCACTATGGTaGCCAGCACAGCACCTACCT +
Preference number: 4 (lower is better)
Translates to: LKSHTVNPMSPCDLFSRRWGSLW*PAQHLP
Trigger: AGGTAGGTGCTGTGCTGGGCACCATAGTGACCCCCA...TCTTCGGGAGAAAAGATCACATGGTGACATGGGATTTACTGTGTGGGACTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACCACGGCTGCAGCATCTaGCGGTGCACTTCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYHGCSI*RCTSAG
Trigger: CCCTGCAGAAGTGCACCGGCAGATGCTGCAGCCGTG...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR TCA 90 bp CTGCCCAGTGTGATCAGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTGCCAGCAAGGCCAAGGGTaGGGAAGGAAAACATCTGAG +
Preference number: 4 (lower is better)
Translates to: LPSVISDAFSQKKEGFNCQQGQG*GRKTSE
Trigger: CTCAGATGTTTTCCTTCCTCACCCTTGGCCTTGCTG...GCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACTGATCACACTGGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR TCA 90 bp CTGCCCAGTGTGATCAGTGATGCGTTCAGTCAGAAGAAAGAAGGATTTAATTGCCACAGAAGTAATGGTTaGTCTCCCTGGAGCCACAGA +
Preference number: 4 (lower is better)
Translates to: LPSVISDAFSQKKEGFNCHRSNG*SPWSHR
Trigger: TCTGTGGCTCCAGGGAGATCAACCATTACTTCTGTG...GCAATTAAATCCTTCTTTCTTCTGACTGAACGCATCACTGATCACACTGGGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR CCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACGCATGGGGGTCACTATaGTGCCCAGCACAGCACCTA +
Preference number: 4 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYAWGSL*CPAQHL
Trigger: TAGGTGCTGTGCTGGGCACCATAGTGACCCCCATGC...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR TCA 90 bp TTAAAGTCCCACACAGTAAATCCCATGTCACCATGTGATCTTTTCTCCCGAAGAAGACCTTGGGGCTCATaGGAATGGTATACCTCAGAG +
Preference number: 4 (lower is better)
Translates to: LKSHTVNPMSPCDLFSRRRPWGS*EWYTSE
Trigger: CTCTGAGGTATACCATTCTCATGAGCCCCAAGGTCT...TCTTCGGGAGAAAAGATCACATGGTGACATGGGATTTACTGTGTGGGACTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
3UTR CAA 72 bp CAGAAAGCATCTGAAATGATGACGATTTCGCTGCTTTaGAAGGTCCTTGTAAATCCCCACAATCGAGTGCAG +
Preference number: 4 (lower is better)
Translates to: QKASEMMTISLL*KVLVNPHNRVQ
Trigger: CTGCACTCGATTGTGGGGATTTACAAGGACCTTCAAAAGCAGCGAAATCGTCATCATTTCAGATGCTTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR GCA 90 bp CATTTGGATCCATTATCAGTTCTTGCATGTAACACCCTGCCTTTAGTCACAGATTTAGTGTCAGTAAGATaGACTCAGCAAGGCCAAGGG +
Preference number: 4 (lower is better)
Translates to: HLDPLSVLACNTLPLVTDLVSVR*TQQGQG
Trigger: CCCTTGGCCTTGCTGAGTGCATCTTACTGACACTAA...ATCTGTGACTAAAGGCAGGGTGTTACATGCAAGAACTGATAATGGATCCAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR TCA 90 bp AGTAAACAGAGTTTCATCCAAGAGGGCTTCTATGAAAGGAAATTAGAGGTGTACAAGTCAGGATCAAAGTaGATGGGGTCAGGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: SKQSFIQEGFYERKLEVYKSGSK*MGSGER
Trigger: TCTTTCTCCTGACCCCATTCACTTTGATCCTGACTT...GTACACCTCTAATTTCCTTTCATAGAAGCCCTCTTGGATGAAACTCTGTTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR CCA 90 bp CATTTGGATCCATTATCAGTTCTTGCATGTAACACCCTGCCTTTAGTCACAGATCAGGATCAAAGTGAATaGGGTCAGGAGAAAGATAAT +
Preference number: 4 (lower is better)
Translates to: HLDPLSVLACNTLPLVTDQDQSE*GQEKDN
Trigger: ATTATCTTTCTCCTGACCCCATTCACTTTGATCCTG...ATCTGTGACTAAAGGCAGGGTGTTACATGCAAGAACTGATAATGGATCCAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR TCA 90 bp CATTTGGATCCATTATCAGTTCTTGCATGTAACACCCTGCCTTTAGTCACAGATGAGAAAGATAATAGTTaGCACAAACTTCACCATCTC +
Preference number: 4 (lower is better)
Translates to: HLDPLSVLACNTLPLVTDEKDNS*HKLHHL
Trigger: GAGATGGTGAAGTTTGTGTCAACTATTATCTTTCTC...ATCTGTGACTAAAGGCAGGGTGTTACATGCAAGAACTGATAATGGATCCAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS GCA 90 bp GGCAAAGAAGGAGATGTTCTGCCTCCCGGTGAAGTAGTTGATGGCTaGCTTGGGCACTGTGCAGGAGATATAAGCCAGGTCAATGACAGA +
Preference number: 5 (lower is better)
Translates to: GKEGDVLPPGEVVDG*LGHCAGDISQVNDR
Trigger: TCTGTCATTGACCTGGCTTATATCTCCTGCACAGTGCCCAAGGCAGCCATCAACTACTTCACCGGGAGGCAGAACATCTCCTTCTTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS-3UTR CAA 90 bp TTAAAGTCCCACACAGTAAATCCCATGTCACCATGTGATCTTTTCTCCCGAAGAGCTTTATTCCGCCCCTaGGGAGAGTTCATCCTGAGG +
Preference number: 5 (lower is better)
Translates to: LKSHTVNPMSPCDLFSRRALFRP*GEFILR
Trigger: CCTCAGGATGAACTCTCCCAAGGGGCGGAATAAAGC...TCTTCGGGAGAAAAGATCACATGGTGACATGGGATTTACTGTGTGGGACTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS TCA 90 bp GGAAGTCAGGATCAAAGTGAATGGGGTCAGGAGAAAGATAATAGTTaGCACAAACTTCACCATCTCGTAGACAGATGTATCCACACAAGA +
Preference number: 5 (lower is better)
Translates to: GSQDQSEWGQEKDNS*HKLHHLVDRCIHTR
Trigger: TCTTGTGTGGATACATCTGTCTACGAGATGGTGAAGTTTGTGTCAACTATTATCTTTCTCCTGACCCCATTCACTTTGATCCTGACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS GCA 72 bp GAGTGCAGCACCGGAGGGAGCCGACTCTATCACGGCTaGAGCATCTGCCGGTGCACTTCTGCAGGGCCCCTA +
Preference number: 6 (lower is better)
Translates to: ECSTGGSRLYHG*SICRCTSAGPL
Trigger: TAGGGGCCCTGCAGAAGTGCACCGGCAGATGCTGCAGCCGTGATAGAGTCGGCTCCCTCCGGTGCTGCACTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS GCA 72 bp GGGAGCCGACTCTATCACGGCTGCAGCATCTGCCGGTaGACTTCTGCAGGGCCCCTATCACTTCCTTGTTTC +
Preference number: 6 (lower is better)
Translates to: GSRLYHGCSICR*TSAGPLSLPCF
Trigger: GAAACAAGGAAGTGATAGGGGCCCTGCAGAAGTGCACCGGCAGATGCTGCAGCCGTGATAGAGTCGGCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS GCA 72 bp GGAGATGTTCTGCCTCCCGGTGAAGTAGTTGATGGCTaGCTTGGGCACTGTGCAGGAGATATAAGCCAGGTC +
Preference number: 6 (lower is better)
Translates to: GDVLPPGEVVDG*LGHCAGDISQV
Trigger: GACCTGGCTTATATCTCCTGCACAGTGCCCAAGGCAGCCATCAACTACTTCACCGGGAGGCAGAACATCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS CCA 72 bp GGTGTAGATGAGGAGGATGAAGGAGATAAGGAGGTTTaGGTACCTGCAGCTGGGAAAGAGCCCCAGCAGGAT +
Preference number: 6 (lower is better)
Translates to: GVDEEDEGDKEV*VPAAGKEPQQD
Trigger: ATCCTGCTGGGGCTCTTTCCCAGCTGCAGGTACCCAAACCTCCTTATCTCCTTCATCCTCCTCATCTACACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3
CDS TCA 72 bp GATCAAAGTGAATGGGGTCAGGAGAAAGATAATAGTTaGCACAAACTTCACCATCTCGTAGACAGATGTATC +
Preference number: 6 (lower is better)
Translates to: DQSEWGQEKDNS*HKLHHLVDRCI
Trigger: GATACATCTGTCTACGAGATGGTGAAGTTTGTGTCAACTATTATCTTTCTCCTGACCCCATTCACTTTGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180165.3