RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR318 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000108265

Ensembl transcript IDs: ENSMUST00000189911.3, ENSMUST00000214728.2

Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGTACATCAAGGCTCAGCAGGGCAGGGTGCATCCTCTTCCCACTaGGGCAGGATATGTCAGCCCAGTAAGAGGAATGGGATGCCACAC +
Preference number: 1 (lower is better)
Translates to: LVHQGSAGQGASSSH*GRICQPSKRNGMPH
Trigger: GTGTGGCATCCCATTCCTCTTACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTGAGCCTTGATGTACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 90 bp GGCCAGAGGCCTCAGATATCCGGGAGTTGGAGCTACAGACAGTTGTaGGCTAACTTACAAAGGGGCTGGGGTTTGTACTCAAGTCCTCAG +
Preference number: 1 (lower is better)
Translates to: GQRPQISGSWSYRQL*ANLQRGWGLYSSPQ
Trigger: CTGAGGACTTGAGTACAAACCCCAGCCCCTTTGTAAGTTAGCTCACAACTGTCTGTAGCTCCAACTCCCGGATATCTGAGGCCTCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 90 bp ACCTCAGTTAAGCGTTGCCTTATTAAACTTAATGGGGAGAGAGGTTaGAGACCGTACTGTTGGAAGGGCAAGCCCTTCACTGCCTCCCAC +
Preference number: 1 (lower is better)
Translates to: TSVKRCLIKLNGERG*RPYCWKGKPFTASH
Trigger: GTGGGAGGCAGTGAAGGGCTTGCCCTTCCAACAGTACGGTCTCCAACCTCTCTCCCCATTAAGTTTAATAAGGCAACGCTTAACTGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 90 bp GTTCAGTTATTGAGACAAGCTGATGAACTACCAGAATATGGATCCTaGAACTGTCCAAGGCAGCGTTCAAGACCAGCCTCCATATCAGTC +
Preference number: 1 (lower is better)
Translates to: VQLLRQADELPEYGS*NCPRQRSRPASISV
Trigger: GACTGATATGGAGGCTGGTCTTGAACGCTGCCTTGGACAGTTTCAGGATCCATATTCTGGTAGTTCATCAGCTTGTCTCAATAACTGAAC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 90 bp TCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTaGTCTACTGGCCAGACACAACATTATTTATTCAATTTACATTTG +
Preference number: 1 (lower is better)
Translates to: SSRFPKCLSRLEPRL*STGQTQHYLFNLHL
Trigger: CAAATGTAAATTGAATAAATAATGTTGTGTCTGGCCAGTAGATCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 90 bp TCAATGTCCACCCAAGCCAAGGTTAAAAGCCCACTCATCTATGGATaGGAAAATCATTTGATCACCTCAGTTAAGCGTTGCCTTATTAAA +
Preference number: 1 (lower is better)
Translates to: SMSTQAKVKSPLIYG*ENHLITSVKRCLIK
Trigger: TTTAATAAGGCAACGCTTAACTGAGGTGATCAAATGATTTTCTCATCCATAGATGAGTGGGCTTTTAACCTTGGCTTGGGTGGACATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 90 bp GTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTGATCTACTaGCCAGACACAACATTATTTATTCAATTTACATTTGATTTCTGC +
Preference number: 1 (lower is better)
Translates to: VSKMPFQARTQVVIY*PDTTLFIQFTFDFC
Trigger: GCAGAAATCAAATGTAAATTGAATAAATAATGTTGTGTCTGGCCAGTAGATCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR GCA 90 bp ACTGAACAACTGTTCATGAACAACTGTTCATGGAAAGAGACAGAGTaGATACTTACAGACAGATCCATTAATGATGTTTATTATGAAGCC +
Preference number: 1 (lower is better)
Translates to: TEQLFMNNCSWKETE*ILTDRSINDVYYEA
Trigger: GGCTTCATAATAAACATCATTAATGGATCTGTCTGTAAGTATGCACTCTGTCTCTTTCCATGAACAGTTGTTCATGAACAGTTGTTCAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 90 bp ACAGATCCATTAATGATGTTTATTATGAAGCCACTGGTGAATTTGTaGAAGAATATTGATAAAGGGAGTCAGGAAGACATGGTTAATCAG +
Preference number: 1 (lower is better)
Translates to: TDPLMMFIMKPLVNL*KNIDKGSQEDMVNQ
Trigger: CTGATTAACCATGTCTTCCTGACTCCCTTTATCAATATTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAATGGATCTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR TCA 90 bp TCTGCCATGCCCACTGCTAGAACATGCCACTTTGCTGTTCGGAGCTGTGCACGTCTTCCCCTTCTCCTCTaGGCAGGTGGGGGCCACCTG +
Preference number: 2 (lower is better)
Translates to: SAMPTARTCHFAVRSCARLPLLL*AGGGHL
Trigger: CAGGTGGCCCCCACCTGCTCAGAGGAGAAGGGGAAG...ACGTGCACAGCTCCGAACAGCAAAGTGGCATGTTCTAGCAGTGGGCATGGCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR TCA 90 bp TGGAGCTTCCCGCTCAATCATTCTGCCATGCCCACTGCTAGAACATGCCACTTTCTGACTCCCACAGTCTaGGAGCCTTGCATCAGGGCA +
Preference number: 2 (lower is better)
Translates to: WSFPLNHSAMPTARTCHFLTPTV*EPCIRA
Trigger: TGCCCTGATGCAAGGCTCTCAGACTGTGGGAGTCAG...AAAGTGGCATGTTCTAGCAGTGGGCATGGCAGAATGATTGAGCGGGAAGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR TCA 90 bp CAGCAGGGCAGGGTGCATCCTCTTCCCACTGAGGCAGGATATGTCAGCCCAGTAAGCTACAGACAGTTGTaGGCTAACTTACAAAGGGGC +
Preference number: 2 (lower is better)
Translates to: QQGRVHPLPTEAGYVSPVSYRQL*ANLQRG
Trigger: GCCCCTTTGTAAGTTAGCTCACAACTGTCTGTAGCT...TACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR GCA 90 bp ATGGGGAGAGAGGTTGGAGACCGTACTGTTGGAAGGGCAAGCCCTTCACTGCCTCTCTTCATCCAAAAATaGGGAGGAATATCAACTCAG +
Preference number: 2 (lower is better)
Translates to: MGREVGDRTVGRASPSLPLFIQK*GGISTQ
Trigger: CTGAGTTGATATTCCTCCGCATTTTTGGATGAAGAG...AGGCAGTGAAGGGCTTGCCCTTCCAACAGTACGGTCTCCAACCTCTCTCCCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR CCA 90 bp TGGAGCTTCCCGCTCAATCATTCTGCCATGCCCACTGCTAGAACATGCCACTTTCCAGAATCCACATGGTaGCTCAAAAGCATCTGCAAC +
Preference number: 2 (lower is better)
Translates to: WSFPLNHSAMPTARTCHFPESTW*LKSICN
Trigger: GTTGCAGATGCTTTTGAGCCACCATGTGGATTCTGG...AAAGTGGCATGTTCTAGCAGTGGGCATGGCAGAATGATTGAGCGGGAAGCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR TCA 90 bp AAGGGGCTGGGGTTTGTACTCAAGTCCTCAGGAAGAGCAGCTAGTTTACTAAGGACCATCACCTCAGTGTaGCACTGTGATCGAAGGATT +
Preference number: 2 (lower is better)
Translates to: KGLGFVLKSSGRAASLLRTITSV*HCDRRI
Trigger: AATCCTTCGATCACAGTGTCACACTGAGGTGATGGT...CCTTAGTAAACTAGCTGCTCTTCCTGAGGACTTGAGTACAAACCCCAGCCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR GCA 90 bp CAGCAGGGCAGGGTGCATCCTCTTCCCACTGAGGCAGGATATGTCAGCCCAGTACTCTTATATAATAGTTaGACCTGCAAAGAAAACCAG +
Preference number: 2 (lower is better)
Translates to: QQGRVHPLPTEAGYVSPVLLYNS*TCKENQ
Trigger: CTGGTTTTCTTTGCAGGTGCAACTATTATATAAGAG...TACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR GCA 90 bp ATTGACTGCTCCTCTAGAGGACCCAGGTTTGATTCCCAGAATCCACATGGTGGCTGGAAAGAGACAGAGTaGATACTTACAGACAGATCC +
Preference number: 2 (lower is better)
Translates to: IDCSSRGPRFDSQNPHGGWKETE*ILTDRS
Trigger: GGATCTGTCTGTAAGTATGCACTCTGTCTCTTTCCA...GCCACCATGTGGATTCTGGGAATCAAACCTGGGTCCTCTAGAGGAGCAGTCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR GCA 90 bp TGGAGCTTCCCGCTCAATCATTCTGCCATGCCCACTGCTAGAACATGCCACTTTTATCATAAGCTACCATaGCTGCTGAGAGATCCACAT +
Preference number: 2 (lower is better)
Translates to: WSFPLNHSAMPTARTCHFYHKLP*LLRDPH
Trigger: ATGTGGATCTCTCAGCAGGCATGGTAGCTTATGATA...AAAGTGGCATGTTCTAGCAGTGGGCATGGCAGAATGATTGAGCGGGAAGCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR GCA 90 bp TTGACTGCTCCTCTAGAGGACCCAGGTTTGATTCCCAGAATCCACATGGTGGCTCCTGTACTCATAAACTaGAAAAAGAGCATCCAGAGA +
Preference number: 2 (lower is better)
Translates to: LTAPLEDPGLIPRIHMVAPVLIN*KKSIQR
Trigger: TCTCTGGATGCTCTTTTTGCAGTTTATGAGTACAGG...AGCCACCATGTGGATTCTGGGAATCAAACCTGGGTCCTCTAGAGGAGCAGTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR CCA 90 bp ATTGACTGCTCCTCTAGAGGACCCAGGTTTGATTCCCAGAATCCACATGGTGGCATGAACAACTGTTCATaGAAAGAGACAGAGTGCATA +
Preference number: 2 (lower is better)
Translates to: IDCSSRGPRFDSQNPHGGMNNCS*KETECI
Trigger: TATGCACTCTGTCTCTTTCCATGAACAGTTGTTCAT...GCCACCATGTGGATTCTGGGAATCAAACCTGGGTCCTCTAGAGGAGCAGTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR TCA 90 bp GACAGATCCATTAATGATGTTTATTATGAAGCCACTGGTGAATTTGTGGAAGAACTCTTGTTCAGTTATTaGGACAAGCTGATGAACTAC +
Preference number: 2 (lower is better)
Translates to: DRSINDVYYEATGEFVEELLFSY*DKLMNY
Trigger: GTAGTTCATCAGCTTGTCTCAATAACTGAACAAGAG...TTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAATGGATCTGTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CAA 90 bp CAGACAGATCCATTAATGATGTTTATTATGAAGCCACTGGTGAATTaGTGGAAGAATATTGATAAAGGGAGTCAGGAAGACATGGTTAAT +
Preference number: 2 (lower is better)
Translates to: QTDPLMMFIMKPLVN*WKNIDKGSQEDMVN
Trigger: ATTAACCATGTCTTCCTGACTCCCTTTATCAATATTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAATGGATCTGTCTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp ACGAGACAGCCAGCCACCGTACTGACTCCCACAGTCTaGGAGCCTTGCATCAGGGCAGGAGGTGCTGTGGAA +
Preference number: 3 (lower is better)
Translates to: TRQPATVLTPTV*EPCIRAGGAVE
Trigger: TTCCACAGCACCTCCTGCCCTGATGCAAGGCTCTCAGACTGTGGGAGTCAGTACGGTGGCTGGCTGTCTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp CAAGGCTCAGCAGGGCAGGGTGCATCCTCTTCCCACTaGGGCAGGATATGTCAGCCCAGTAAGAGGAATGGG +
Preference number: 3 (lower is better)
Translates to: QGSAGQGASSSH*GRICQPSKRNG
Trigger: CCCATTCCTCTTACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTGAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR GCA 72 bp AGATGTAGTCTCCCCTCCCTCAGCCTGAAACCTGCTTaGTCAGGGGTGGAGCTTCCCGCTCAATCATTCTGC +
Preference number: 3 (lower is better)
Translates to: RCSLPSLSLKPA*SGVELPAQSFC
Trigger: GCAGAATGATTGAGCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGAGGGAGGGGAGACTACATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR GCA 72 bp CTCAGGGGTGGAGCTTCCCGCTCAATCATTCTGCCATaGCCACTGCTAGAACATGCCACTTTGCTGTTCGGA +
Preference number: 3 (lower is better)
Translates to: LRGGASRSIILP*PLLEHATLLFG
Trigger: TCCGAACAGCAAAGTGGCATGTTCTAGCAGTGGGCATGGCAGAATGATTGAGCGGGAAGCTCCACCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp TTGAGACAAGCTGATGAACTACCAGAATATGGATCCTaGAACTGTCCAAGGCAGCGTTCAAGACCAGCCTCC +
Preference number: 3 (lower is better)
Translates to: LRQADELPEYGS*NCPRQRSRPAS
Trigger: GGAGGCTGGTCTTGAACGCTGCCTTGGACAGTTTCAGGATCCATATTCTGGTAGTTCATCAGCTTGTCTCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 72 bp AAGCGTTGCCTTATTAAACTTAATGGGGAGAGAGGTTaGAGACCGTACTGTTGGAAGGGCAAGCCCTTCACT +
Preference number: 3 (lower is better)
Translates to: KRCLIKLNGERG*RPYCWKGKPFT
Trigger: AGTGAAGGGCTTGCCCTTCCAACAGTACGGTCTCCAACCTCTCTCCCCATTAAGTTTAATAAGGCAACGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR-3UTR CAA 90 bp TCTGCCATGCCCACTGCTAGAACATGCCACTTTGCTGTTCGGAGCTGTGCACGTATTTGTGGAAGAATATaGATAAAGGGAGTCAGGAAG +
Preference number: 3 (lower is better)
Translates to: SAMPTARTCHFAVRSCARICGRI*IKGVRK
Trigger: CTTCCTGACTCCCTTTATCAATATTCTTCCACAAAT...ACGTGCACAGCTCCGAACAGCAAAGTGGCATGTTCTAGCAGTGGGCATGGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp ACCCAAGCCAAGGTTAAAAGCCCACTCATCTATGGATaGGAAAATCATTTGATCACCTCAGTTAAGCGTTGC +
Preference number: 3 (lower is better)
Translates to: TQAKVKSPLIYG*ENHLITSVKRC
Trigger: GCAACGCTTAACTGAGGTGATCAAATGATTTTCTCATCCATAGATGAGTGGGCTTTTAACCTTGGCTTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp CACTGTGATCGAAGGATTGTGCTCTTGTTCAGTTATTaGGACAAGCTGATGAACTACCAGAATATGGATCCT +
Preference number: 3 (lower is better)
Translates to: HCDRRIVLLFSY*DKLMNYQNMDP
Trigger: AGGATCCATATTCTGGTAGTTCATCAGCTTGTCTCAATAACTGAACAAGAGCACAATCCTTCGATCACAGTG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp CATTCAGATTTAGACCATCACCTCAGTGTGACACTGTaGTCGAAGGATTGTGCTCTTGTTCAGTTATTGAGA +
Preference number: 3 (lower is better)
Translates to: HSDLDHHLSVTL*SKDCALVQLLR
Trigger: TCTCAATAACTGAACAAGAGCACAATCCTTCGATCACAGTGTCACACTGAGGTGATGGTCTAAATCTGAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR TCA 72 bp TTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTaGTCTACTGGCCAGACACAACATTATTTATTCAAT +
Preference number: 3 (lower is better)
Translates to: FPKCLSRLEPRL*STGQTQHYLFN
Trigger: ATTGAATAAATAATGTTGTGTCTGGCCAGTAGATCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 72 bp CATACAACTGAACAACTGTTCATGAACAACTGTTCATaGAAAGAGACAGAGTGCATACTTACAGACAGATCC +
Preference number: 3 (lower is better)
Translates to: HTTEQLFMNNCS*KETECILTDRS
Trigger: GGATCTGTCTGTAAGTATGCACTCTGTCTCTTTCCATGAACAGTTGTTCATGAACAGTTGTTCAGTTGTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 72 bp ATGCCTTTCCAGGCTAGAACCCAGGTTGTGATCTACTaGCCAGACACAACATTATTTATTCAATTTACATTT +
Preference number: 3 (lower is better)
Translates to: MPFQARTQVVIY*PDTTLFIQFTF
Trigger: AAATGTAAATTGAATAAATAATGTTGTGTCTGGCCAGTAGATCACAACCTGGGTTCTAGCCTGGAAAGGCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CCA 72 bp TTAATGATGTTTATTATGAAGCCACTGGTGAATTTGTaGAAGAATATTGATAAAGGGAGTCAGGAAGACATG +
Preference number: 3 (lower is better)
Translates to: LMMFIMKPLVNL*KNIDKGSQEDM
Trigger: CATGTCTTCCTGACTCCCTTTATCAATATTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR TCA 90 bp ATGGGGAGAGAGGTTGGAGACCGTACTGTTGGAAGGGCAAGCCCTTCACTGCCTAGGTGGAGAGAGTGGTaGCATAGAACAGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: MGREVGDRTVGRASPSLPRWREW*HRTGWP
Trigger: TGGCCAGCCTGTTCTATGTCACCACTCTCTCCACCT...AGGCAGTGAAGGGCTTGCCCTTCCAACAGTACGGTCTCCAACCTCTCTCCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR GCA 90 bp CAGCAGGGCAGGGTGCATCCTCTTCCCACTGAGGCAGGATATGTCAGCCCAGTACACTGTGTGCATGAATaGATTGATGGAGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: QQGRVHPLPTEAGYVSPVHCVHE*IDGAAA
Trigger: AGCAGCAGCTCCATCAATGCATTCATGCACACAGTG...TACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CAA 72 bp ATCATTCTGCCATGCCCACTGCTAGAACATGCCACTTaGCTGTTCGGAGCTGTGCACGTGGTCACCCTGCTA +
Preference number: 4 (lower is better)
Translates to: IILPCPLLEHAT*LFGAVHVVTLL
Trigger: TAGCAGGGTGACCACGTGCACAGCTCCGAACAGCAAAGTGGCATGTTCTAGCAGTGGGCATGGCAGAATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR CCA 90 bp CAGCAGGGCAGGGTGCATCCTCTTCCCACTGAGGCAGGATATGTCAGCCCAGTAAGAAACACAAAGGTTTaGACTGCACAGCCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: QQGRVHPLPTEAGYVSPVRNTKV*TAQPRK
Trigger: CTTTCTGGGCTGTGCAGTCCAAACCTTTGTGTTTCT...TACTGGGCTGACATATCCTGCCTCAGTGGGAAGAGGATGCACCCTGCCCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR GCA 90 bp TCTGCCATGCCCACTGCTAGAACATGCCACTTTGCTGTTCGGAGCTGTGCACGTCACAAAGGTTTGGACTaGACAGCCCAGAAAGGAAAT +
Preference number: 4 (lower is better)
Translates to: SAMPTARTCHFAVRSCARHKGLD*TAQKGN
Trigger: ATTTCCTTTCTGGGCTGTGCAGTCCAAACCTTTGTG...ACGTGCACAGCTCCGAACAGCAAAGTGGCATGTTCTAGCAGTGGGCATGGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR GCA 90 bp ATTGACTGCTCCTCTAGAGGACCCAGGTTTGATTCCCAGAATCCACATGGTGGCCTCACGAGGACTGTATaGTCATACTGGGACGTGTCT +
Preference number: 4 (lower is better)
Translates to: IDCSSRGPRFDSQNPHGGLTRTV*SYWDVS
Trigger: AGACACGTCCCAGTATGAGCATACAGTCCTCGTGAG...GCCACCATGTGGATTCTGGGAATCAAACCTGGGTCCTCTAGAGGAGCAGTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR GCA 90 bp ATGGGGAGAGAGGTTGGAGACCGTACTGTTGGAAGGGCAAGCCCTTCACTGCCTAACACATACACTGTGTaGATGAATGCATTGATGGAG +
Preference number: 4 (lower is better)
Translates to: MGREVGDRTVGRASPSLPNTYTV*MNALME
Trigger: CTCCATCAATGCATTCATGCACACAGTGTATGTGTT...AGGCAGTGAAGGGCTTGCCCTTCCAACAGTACGGTCTCCAACCTCTCTCCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR CCA 90 bp AAGGGGCTGGGGTTTGTACTCAAGTCCTCAGGAAGAGCAGCTAGTTTACTAAGGTCCATGTGTCCATACTaGAAAAGACCAACTAAGGTG +
Preference number: 4 (lower is better)
Translates to: KGLGFVLKSSGRAASLLRSMCPY*KRPTKV
Trigger: CACCTTAGTTGGTCTTTTCCAGTATGGACACATGGA...CCTTAGTAAACTAGCTGCTCTTCCTGAGGACTTGAGTACAAACCCCAGCCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CAA 72 bp CTAAAAGCATTGACTGCTCCTCTAGAGGACCCAGGTTaGATTCCCAGAATCCACATGGTGGCTCAAAAGCAT +
Preference number: 4 (lower is better)
Translates to: LKALTAPLEDPG*IPRIHMVAQKH
Trigger: ATGCTTTTGAGCCACCATGTGGATTCTGGGAATCAAACCTGGGTCCTCTAGAGGAGCAGTCAATGCTTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CAA 72 bp TTCCCCTGCTTTATAACTGCGTGCAGAACAGTAAAATaGAGCTTTGATCAGAATGCCTGTCTTAGCTACATT +
Preference number: 4 (lower is better)
Translates to: FPCFITACRTVK*SFDQNACLSYI
Trigger: AATGTAGCTAAGACAGGCATTCTGATCAAAGCTCAATTTTACTGTTCTGCACGCAGTTATAAAGCAGGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
3UTR CAA 72 bp CCATTAATGATGTTTATTATGAAGCCACTGGTGAATTaGTGGAAGAATATTGATAAAGGGAGTCAGGAAGAC +
Preference number: 4 (lower is better)
Translates to: PLMMFIMKPLVN*WKNIDKGSQED
Trigger: GTCTTCCTGACTCCCTTTATCAATATTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAATGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR CAA 90 bp AAGGGGCTGGGGTTTGTACTCAAGTCCTCAGGAAGAGCAGCTAGTTTACTAAGGCAGAAACACAAAGGTTaGGACTGCACAGCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: KGLGFVLKSSGRAASLLRQKHKG*DCTAQK
Trigger: TTTCTGGGCTGTGCAGTCCAAACCTTTGTGTTTCTG...CCTTAGTAAACTAGCTGCTCTTCCTGAGGACTTGAGTACAAACCCCAGCCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR CAA 90 bp GTTCATGAACAACTGTTCATGGAAAGAGACAGAGTGCATACTTACAGACAGATCAGCACAGCCACCACTTaGTCCCTTCCAGGAGAATGT +
Preference number: 5 (lower is better)
Translates to: VHEQLFMERDRVHTYRQISTATT*SLPGEC
Trigger: ACATTCTCCTGGAAGGGACAAAGTGGTGGCTGTGCT...GATCTGTCTGTAAGTATGCACTCTGTCTCTTTCCATGAACAGTTGTTCATGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS-3UTR CAA 90 bp GACAGATCCATTAATGATGTTTATTATGAAGCCACTGGTGAATTTGTGGAAGAAAGGACCAGTGTGATGTaGCCCATGAGAGCCACTGCA +
Preference number: 5 (lower is better)
Translates to: DRSINDVYYEATGEFVEERTSVM*PMRATA
Trigger: TGCAGTGGCTCTCATGGGCAACATCACACTGGTCCT...TTCTTCCACAAATTCACCAGTGGCTTCATAATAAACATCATTAATGGATCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214728.2
CDS CAA 72 bp CTTCGGTCCAGCCTGATGAGGAGGACCAGTGTGATGTaGCCCATGAGAGCCACTGCAAAGAGGATGGCAATC +
Preference number: 6 (lower is better)
Translates to: LRSSLMRRTSVM*PMRATAKRMAI
Trigger: GATTGCCATCCTCTTTGCAGTGGCTCTCATGGGCAACATCACACTGGTCCTCCTCATCAGGCTGGACCGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189911.3
ENSMUST00000214728.2
CDS CAA 90 bp GTGTGGAGTCTTCGGTCCAGCCTGATGAGGAGGACCAGTGTGATGTaGCCCATGAGAGCCACTGCAAAGAGGATGGCAATCAGTGTGAAG +
Preference number: 6 (lower is better)
Translates to: VWSLRSSLMRRTSVM*PMRATAKRMAISVK
Trigger: CTTCACACTGATTGCCATCCTCTTTGCAGTGGCTCTCATGGGCAACATCACACTGGTCCTCCTCATCAGGCTGGACCGAAGACTCCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189911.3
ENSMUST00000214728.2
CDS GCA 72 bp GAGGAGGACCAGTGTGATGTTGCCCATGAGAGCCACTaGAAAGAGGATGGCAATCAGTGTGAAGAGGAAGGT +
Preference number: 6 (lower is better)
Translates to: EEDQCDVAHESH*KEDGNQCEEEG
Trigger: ACCTTCCTCTTCACACTGATTGCCATCCTCTTTGCAGTGGCTCTCATGGGCAACATCACACTGGTCCTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189911.3
ENSMUST00000214728.2
CDS GCA 72 bp GAATGGAAGTTGAAACACATACACTGTGTGCATGAATaGATTGATGGAGCTGCTGCTCCAGGCACCAGCGAC +
Preference number: 6 (lower is better)
Translates to: EWKLKHIHCVHE*IDGAAAPGTSD
Trigger: GTCGCTGGTGCCTGGAGCAGCAGCTCCATCAATGCATTCATGCACACAGTGTATGTGTTTCAACTTCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000189911.3
ENSMUST00000214728.2