RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR313 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070438

Ensembl transcript IDs: ENSMUST00000082220.5, ENSMUST00000217506.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTCCACAAGGGGACTTGCCACTCACTCAGTACACACAGTGCTCCTaGGAGTTCTGCCATAGCTCCAGAGCCTGGGATGAGGGCGTCAAT +
Preference number: 1 (lower is better)
Translates to: VPQGDLPLTQYTQCS*EFCHSSRAWDEGVN
Trigger: ATTGACGCCCTCATCCCAGGCTCTGGAGCTATGGCAGAACTCTCAGGAGCACTGTGTGTACTGAGTGAGTGGCAAGTCCCCTTGTGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 90 bp GCCATAGCTCCAGAGCCTGGGATGAGGGCGTCAATCAGCCACAGCTaGCTGGTCATCTCCTTGTGTACAAATCCAGGCTCTACAAACAGA +
Preference number: 1 (lower is better)
Translates to: AIAPEPGMRASISHS*LVISLCTNPGSTNR
Trigger: TCTGTTTGTAGAGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCCTCATCCCAGGCTCTGGAGCTATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 90 bp ACCCAGGACCCTGAACAGGAAACTCTTATGAGTCCTCCCAATAACTaGCACACTTGGGAAGCTGAGGCAGAAGAGCAAGTTCATGGTCAT +
Preference number: 1 (lower is better)
Translates to: TQDPEQETLMSPPNN*HTWEAEAEEQVHGH
Trigger: ATGACCATGAACTTGCTCTTCTGCCTCAGCTTCCCAAGTGTGGCAGTTATTGGGAGGACTCATAAGAGTTTCCTGTTCAGGGTCCTGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 90 bp ACTGACATAGGACACTCCCTCTTCTGGGTCGGCAAAGACCTCCAGTaGAAATCCAACAGGTGTATGGTATTCACAGCAAAAGAGAGGCAG +
Preference number: 1 (lower is better)
Translates to: TDIGHSLFWVGKDLQ*KSNRCMVFTAKERQ
Trigger: CTGCCTCTCTTTTGCTGTGAATACCATACACCTGTTGGATTTCCACTGGAGGTCTTTGCCGACCCAGAAGAGGGAGTGTCCTATGTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 90 bp AGAGATGGGCAAGAGCATCTGCTGCTTTCTCAAAGGACCGCTGATTaGTTTGCAGCACTTACACAGTGCCTCGCAACCATCTGTAACTTC +
Preference number: 1 (lower is better)
Translates to: RDGQEHLLLSQRTAD*FAALTQCLATICNF
Trigger: GAAGTTACAGATGGTTGCGAGGCACTGTGTAAGTGCTGCAAATCAATCAGCGGTCCTTTGAGAAAGCAGCAGATGCTCTTGCCCATCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 90 bp CACACTTGGGAAGCTGAGGCAGAAGAGCAAGTTCATGGTCATCCTTaGCTACGTACTGAGTTTGAAGCTACGGGGATACTTCAGATCCTG +
Preference number: 1 (lower is better)
Translates to: HTWEAEAEEQVHGHP*LRTEFEATGILQIL
Trigger: CAGGATCTGAAGTATCCCCGTAGCTTCAAACTCAGTACGTAGTCAAGGATGACCATGAACTTGCTCTTCTGCCTCAGCTTCCCAAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 90 bp ATGGTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTATaGAGAGCAAGTCTGTTCCACAAGGGGACTTGCCACTCACTCAGT +
Preference number: 1 (lower is better)
Translates to: MVFTAKERQRHRMWL*RASLFHKGTCHSLS
Trigger: ACTGAGTGAGTGGCAAGTCCCCTTGTGGAACAGACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 90 bp AGGTGTATGGTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTaGTTATGGAGAGCAAGTCTGTTCCACAAGGGGACTTGCCACTCA +
Preference number: 1 (lower is better)
Translates to: RCMVFTAKERQRHRM*LWRASLFHKGTCHS
Trigger: TGAGTGGCAAGTCCCCTTGTGGAACAGACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATACCATACACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 90 bp ACTGAGTTTGAAGCTACGGGGATACTTCAGATCCTGTCTTTAAAATaGGACCCAAGAGCCAGGAGAGATGGGCAAGAGCATCTGCTGCTT +
Preference number: 1 (lower is better)
Translates to: TEFEATGILQILSLK*DPRARRDGQEHLLL
Trigger: AAGCAGCAGATGCTCTTGCCCATCTCTCCTGGCTCTTGGGTCTCATTTTAAAGACAGGATCTGAAGTATCCCCGTAGCTTCAAACTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 90 bp TCTTCTGGGTCGGCAAAGACCTCCAGTGGAAATCCAACAGGTGTATaGTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTAT +
Preference number: 1 (lower is better)
Translates to: SSGSAKTSSGNPTGV*YSQQKRGRDTGCGY
Trigger: ATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATACCATACACCTGTTGGATTTCCACTGGAGGTCTTTGCCGACCCAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 90 bp AAAAGGGCAATCCTGGCAGTATATAGGACGAGGCGACATTTCCCATaGACTGACGTGAGTGAATGTTTAATTAGAAAGGAACTTAAGAAT +
Preference number: 1 (lower is better)
Translates to: KRAILAVYRTRRHFP*TDVSECLIRKELKN
Trigger: ATTCTTAAGTTCCTTTCTAATTAAACATTCACTCACGTCAGTTCATGGGAAATGTCGCCTCGTCCTATATACTGCCAGGATTGCCCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CAA 90 bp CCTGGGATGAGGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTaGTGTACAAATCCAGGCTCTACAAACAGAGACGAGAAGGACAGT +
Preference number: 2 (lower is better)
Translates to: PGMRASISHSWLVIS*CTNPGSTNRDEKDS
Trigger: ACTGTCCTTCTCGTCTCTGTTTGTAGAGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCCTCATCCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR TCA 90 bp GTAAGAATGGCTGTTCCTGAAGTGTGCAAAACCCACAAGGCACATCTGGTGACACTCCAGAGCCTGGGATaGGGGCGTCAATCAGCCACA +
Preference number: 2 (lower is better)
Translates to: VRMAVPEVCKTHKAHLVTLQSLG*GRQSAT
Trigger: TGTGGCTGATTGACGCCCTCATCCCAGGCTCTGGAG...TGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCATTCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR CCA 90 bp GGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTTTGGAAAGGTATGTGTaGGTCAAACAGTTGGCTCCA +
Preference number: 2 (lower is better)
Translates to: GRQSATAGWSSPCVQIQALERYV*VKQLAP
Trigger: TGGAGCCAACTGTTTGACCCACACATACCTTTCCAA...AGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR CCA 90 bp GTAAGAATGGCTGTTCCTGAAGTGTGCAAAACCCACAAGGCACATCTGGTGACATCAATCAGCCACAGCTaGCTGGTCATCTCCTTGTGT +
Preference number: 2 (lower is better)
Translates to: VRMAVPEVCKTHKAHLVTSISHS*LVISLC
Trigger: ACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGA...TGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCATTCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CAA 90 bp ATGGGCAAGAGCATCTGCTGCTTTCTCAAAGGACCGCTGATTGATTaGCAGCACTTACACAGTGCCTCGCAACCATCTGTAACTTCATCT +
Preference number: 2 (lower is better)
Translates to: MGKSICCFLKGPLID*QHLHSASQPSVTSS
Trigger: AGATGAAGTTACAGATGGTTGCGAGGCACTGTGTAAGTGCTGCAAATCAATCAGCGGTCCTTTGAGAAAGCAGCAGATGCTCTTGCCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR GCA 90 bp ATGGCTGTTCCTGAAGTGTGCAAAACCCACAAGGCACATCTGGTGACAAGGCTTGTGTGGCTTCTGGCATaGTCTAAAACTGGTTTCAAC +
Preference number: 2 (lower is better)
Translates to: MAVPEVCKTHKAHLVTRLVWLLA*SKTGFN
Trigger: GTTGAAACCAGTTTTAGAGCATGCCAGAAGCCACAC...AAGCCTTGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR CCA 90 bp GTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTATGGAGAGCAAGTGACTGGTGTGGCTTCTaGCATGCTCTAAAACTGGTT +
Preference number: 2 (lower is better)
Translates to: VFTAKERQRHRMWLWRASDWCGF*HALKLV
Trigger: AACCAGTTTTAGAGCATGCCAGAAGCCACACCAGTC...ACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR TCA 90 bp GTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTATGGAGAGCAAGTTATCTAGAAAGCAGGTaGGTTGAACACCAATCAACA +
Preference number: 2 (lower is better)
Translates to: VFTAKERQRHRMWLWRASYLESR*VEHQST
Trigger: TGTTGATTGGTGTTCAACTCACCTGCTTTCTAGATA...ACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 72 bp ACCCAAGAGCCAGGAGAGATGGGCAAGAGCATCTGCTaGTTTCTCAAAGGACCGCTGATTGATTTGCAGCAC +
Preference number: 3 (lower is better)
Translates to: TQEPGEMGKSIC*FLKGPLIDLQH
Trigger: GTGCTGCAAATCAATCAGCGGTCCTTTGAGAAAGCAGCAGATGCTCTTGCCCATCTCTCCTGGCTCTTGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 72 bp GAGACCCAAGAGCCAGGAGAGATGGGCAAGAGCATCTaGTGCTTTCTCAAAGGACCGCTGATTGATTTGCAG +
Preference number: 3 (lower is better)
Translates to: ETQEPGEMGKSI*CFLKGPLIDLQ
Trigger: CTGCAAATCAATCAGCGGTCCTTTGAGAAAGCAGCAGATGCTCTTGCCCATCTCTCCTGGCTCTTGGGTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 72 bp TGGGCAAGAGCATCTGCTGCTTTCTCAAAGGACCGCTaGTTGATTTGCAGCACTTACACAGTGCCTCGCAAC +
Preference number: 3 (lower is better)
Translates to: WARASAAFSKDR*LICSTYTVPRN
Trigger: GTTGCGAGGCACTGTGTAAGTGCTGCAAATCAATCAGCGGTCCTTTGAGAAAGCAGCAGATGCTCTTGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 72 bp TGGTTATGGAGAGCAAGTCTGTTCCACAAGGGGACTTaGCACTCACTCAGTACACACAGTGCTCCTGAGAGT +
Preference number: 3 (lower is better)
Translates to: WLWRASLFHKGT*HSLSTHSAPES
Trigger: ACTCTCAGGAGCACTGTGTGTACTGAGTGAGTGGCAAGTCCCCTTGTGGAACAGACTTGCTCTCCATAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 72 bp ACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTATaGAGAGCAAGTCTGTTCCACAAGGGGACTTGCCAC +
Preference number: 3 (lower is better)
Translates to: TAKERQRHRMWL*RASLFHKGTCH
Trigger: GTGGCAAGTCCCCTTGTGGAACAGACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 72 bp GTGAGATTGGCAGTAAGAATGGCTGTTCCTGAAGTGTaGAAAACCCACAAGGCACATCTGGTGACAAGGCTT +
Preference number: 3 (lower is better)
Translates to: VRLAVRMAVPEV*KTHKAHLVTRL
Trigger: AAGCCTTGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCATTCTTACTGCCAATCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 72 bp GTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTaGTTATGGAGAGCAAGTCTGTTCCACAAGGGGACT +
Preference number: 3 (lower is better)
Translates to: VFTAKERQRHRM*LWRASLFHKGT
Trigger: AGTCCCCTTGTGGAACAGACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 72 bp TCGGCAAAGACCTCCAGTGGAAATCCAACAGGTGTATaGTATTCACAGCAAAAGAGAGGCAGAGACACAGGA +
Preference number: 3 (lower is better)
Translates to: SAKTSSGNPTGV*YSQQKRGRDTG
Trigger: TCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATACCATACACCTGTTGGATTTCCACTGGAGGTCTTTGCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR-3UTR CAA 90 bp CTCAGTACACACAGTGCTCCTGAGAGTTCTGCCATAGCTCCAGAGCCTGGGATGAAACAGGTTTGTGACTaGAATATAGATCAGAGGTCT +
Preference number: 3 (lower is better)
Translates to: LSTHSAPESSAIAPEPGMKQVCD*NIDQRS
Trigger: AGACCTCTGATCTATATTCAAGTCACAAACCTGTTT...CATCCCAGGCTCTGGAGCTATGGCAGAACTCTCAGGAGCACTGTGTGTACTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 72 bp GAAGCTGAGGCAGAAGAGCAAGTTCATGGTCATCCTTaGCTACGTACTGAGTTTGAAGCTACGGGGATACTT +
Preference number: 3 (lower is better)
Translates to: EAEAEEQVHGHP*LRTEFEATGIL
Trigger: AAGTATCCCCGTAGCTTCAAACTCAGTACGTAGTCAAGGATGACCATGAACTTGCTCTTCTGCCTCAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR GCA 72 bp AATAGGGTACAGAATCCATTGGAGATAAAACGTCACTaGGGGGACTGGTGTGGCTTCTGGCATGCTCTAAAA +
Preference number: 3 (lower is better)
Translates to: NRVQNPLEIKRH*GDWCGFWHALK
Trigger: TTTTAGAGCATGCCAGAAGCCACACCAGTCCCCGCAGTGACGTTTTATCTCCAATGGATTCTGTACCCTATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 72 bp GAAACTCTTATGAGTCCTCCCAATAACTGCCACACTTaGGAAGCTGAGGCAGAAGAGCAAGTTCATGGTCAT +
Preference number: 3 (lower is better)
Translates to: ETLMSPPNNCHT*EAEAEEQVHGH
Trigger: ATGACCATGAACTTGCTCTTCTGCCTCAGCTTCCCAAGTGTGGCAGTTATTGGGAGGACTCATAAGAGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CCA 72 bp AGAATCAAACCAAGAACAACCGCAAAAGGGCAATCCTaGCAGTATATAGGACGAGGCGACATTTCCCATGAA +
Preference number: 3 (lower is better)
Translates to: RIKPRTTAKGQS*QYIGRGDISHE
Trigger: TTCATGGGAAATGTCGCCTCGTCCTATATACTGCCAGGATTGCCCTTTTGCGGTTGTTCTTGGTTTGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR TCA 72 bp ATCCTGGCAGTATATAGGACGAGGCGACATTTCCCATaGACTGACGTGAGTGAATGTTTAATTAGAAAGGAA +
Preference number: 3 (lower is better)
Translates to: ILAVYRTRRHFP*TDVSECLIRKE
Trigger: TTCCTTTCTAATTAAACATTCACTCACGTCAGTTCATGGGAAATGTCGCCTCGTCCTATATACTGCCAGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR TCA 90 bp GGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTGAATGTATGAAAGGCTaGGTAGATGGCCCCACCTAC +
Preference number: 4 (lower is better)
Translates to: GRQSATAGWSSPCVQIQAECMKG*VDGPTY
Trigger: GTAGGTGGGGCCATCTACTCAGCCTTTCATACATTC...AGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTCTGGTTCCATAGATCAGTaGTCTGAGGATGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: ASISHSWLVISLCTNPGSGSIDQ*SEDGQA
Trigger: TGCCTGGCCATCCTCAGACCACTGATCTATGGAACC...AGAGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CAA 72 bp TTTGCCCATGGAGGCCAGAATAGGGTACAGAATCCATaGGAGATAAAACGTCACTGCGGGGACTGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: FAHGGQNRVQNP*EIKRHCGDWCG
Trigger: GCCACACCAGTCCCCGCAGTGACGTTTTATCTCCAATGGATTCTGTACCCTATTCTGGCCTCCATGGGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
3UTR CAA 72 bp AGGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTaGTGTACAAATCCAGGCTCTACAAACAGAGACGAG +
Preference number: 4 (lower is better)
Translates to: RASISHSWLVIS*CTNPGSTNRDE
Trigger: CTCGTCTCTGTTTGTAGAGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR GCA 90 bp GGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTGAACTGTGGCCACAATaGCAATATAGGAGACCACTG +
Preference number: 4 (lower is better)
Translates to: GRQSATAGWSSPCVQIQAELWPQ*QYRRPL
Trigger: CAGTGGTCTCCTATATTGGCATTGTGGCCACAGTTC...AGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTAAGTACATGGGAGAGTaGAGTCGACTGTCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: GRQSATAGWSSPCVQIQAKYMGE*SRLSLV
Trigger: GACAAGAGACAGTCGACTCCACTCTCCCATGTACTT...AGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GTCCTCCCAATAACTGCCACACTTGGGAAGCTGAGGCAGAAGAGCAAGTTCATGATATCACCACTGCCTTaGGGATGGTGGCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: VLPITATLGKLRQKSKFMISPLP*GWWLRC
Trigger: ACACCTCAGCCACCATCCCCAAGGCAGTGGTGATAT...CATGAACTTGCTCTTCTGCCTCAGCTTCCCAAGTGTGGCAGTTATTGGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR TCA 90 bp ATGGCTGTTCCTGAAGTGTGCAAAACCCACAAGGCACATCTGGTGACAAGGCTTCAGCTGTGGGATATCTaGGAAGCCCCTGAGGATGAA +
Preference number: 4 (lower is better)
Translates to: MAVPEVCKTHKAHLVTRLQLWDI*EAPEDE
Trigger: TTCATCCTCAGGGGCTTCTCAGATATCCCACAGCTG...AAGCCTTGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR GCA 90 bp GGGCGTCAATCAGCCACAGCTGGCTGGTCATCTCCTTGTGTACAAATCCAGGCTGGCAGTGACCACCAATaGAGAACAATATTTGTGGCT +
Preference number: 4 (lower is better)
Translates to: GRQSATAGWSSPCVQIQAGSDHQ*RTIFVA
Trigger: AGCCACAAATATTGTTCTGCATTGGTGGTCACTGCC...AGCCTGGATTTGTACACAAGGAGATGACCAGCCAGCTGTGGCTGATTGACGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GGACTGGTGTGGCTTCTGGCATGCTCTAAAACTGGTTTCAACAGCAATATCAAGGAAAGGCTGAGTAGATaGCCCCACCTACCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GLVWLLACSKTGFNSNIKERLSR*PHLPRQ
Trigger: CTGCCTGGGTAGGTGGGGCCATCTACTCAGCCTTTC...CTTGATATTGCTGTTGAAACCAGTTTTAGAGCATGCCAGAAGCCACACCAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GTATTCACAGCAAAAGAGAGGCAGAGACACAGGATGTGGTTATGGAGAGCAAGTCCACTGCCTTGGGGATaGTGGCTGAGGTGTAGCAAA +
Preference number: 4 (lower is better)
Translates to: VFTAKERQRHRMWLWRASPLPWG*WLRCSK
Trigger: TTTGCTACACCTCAGCCACCATCCCCAAGGCAGTGG...ACTTGCTCTCCATAACCACATCCTGTGTCTCTGCCTCTCTTTTGCTGTGAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp CTCAGTACACACAGTGCTCCTGAGAGTTCTGCCATAGCTCCAGAGCCTGGGATGCAGACAATAGACAACTaGATTCAGAGATGGTGTGAC +
Preference number: 4 (lower is better)
Translates to: LSTHSAPESSAIAPEPGMQTIDN*IQRWCD
Trigger: GTCACACCATCTCTGAATCCAGTTGTCTATTGTCTG...CATCCCAGGCTCTGGAGCTATGGCAGAACTCTCAGGAGCACTGTGTGTACTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR GCA 90 bp GGACTGGTGTGGCTTCTGGCATGCTCTAAAACTGGTTTCAACAGCAATATCAAGCTTCTACTGAGGGGATaGAAAGAACTGTGGCCACAA +
Preference number: 4 (lower is better)
Translates to: GLVWLLACSKTGFNSNIKLLLRG*KELWPQ
Trigger: TTGTGGCCACAGTTCTTTGCATCCCCTCAGTAGAAG...CTTGATATTGCTGTTGAAACCAGTTTTAGAGCATGCCAGAAGCCACACCAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp GGACTGGTGTGGCTTCTGGCATGCTCTAAAACTGGTTTCAACAGCAATATCAAGGCAAGAAAACTGGTATaGCCATCAATCTCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: GLVWLLACSKTGFNSNIKARKLV*PSISAV
Trigger: CACAGCTGAGATTGATGGCCATACCAGTTTTCTTGC...CTTGATATTGCTGTTGAAACCAGTTTTAGAGCATGCCAGAAGCCACACCAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp TATAAATACATACACACAAAGGCAATGCCCAGAGCCAGGAGACAACGATCTGTGAACTGGATTCAGAGATaGTGTGACTACAGAGTAGAA +
Preference number: 4 (lower is better)
Translates to: YKYIHTKAMPRARRQRSVNWIQR*CDYRVE
Trigger: TTCTACTCTGTAGTCACACCATCTCTGAATCCAGTT...CACAGATCGTTGTCTCCTGGCTCTGGGCATTGCCTTTGTGTGTATGTATTTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS-3UTR CCA 90 bp AAAGAGAATCAAACCAAGAACAACCGCAAAAGGGCAATCCTGGCAGTATATAGGAATGAGCAAGAAAACTaGTATGGCCATCAATCTCAG +
Preference number: 4 (lower is better)
Translates to: KENQTKNNRKRAILAVYRNEQEN*YGHQSQ
Trigger: CTGAGATTGATGGCCATACCAGTTTTCTTGCTCATT...CCTATATACTGCCAGGATTGCCCTTTTGCGGTTGTTCTTGGTTTGATTCTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS TCA 90 bp GGGTCCACAGTAGGGAAGGGAGAAGGTGTTGAATGTATGAAAGGCTaGGTAGATGGCCCCACCTACCCAGGCAGTGACCACCAATGCAGA +
Preference number: 5 (lower is better)
Translates to: GSTVGKGEGVECMKG*VDGPTYPGSDHQCR
Trigger: TCTGCATTGGTGGTCACTGCCTGGGTAGGTGGGGCCATCTACTCAGCCTTTCATACATTCAACACCTTCTCCCTTCCCTACTGTGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082220.5
ENSMUST00000217506.2
CDS-3UTR CAA 90 bp ATGGCTGTTCCTGAAGTGTGCAAAACCCACAAGGCACATCTGGTGACAAGGCTTAATGCAGAACAATATTaGTGGCTCATGATGGTTCCA +
Preference number: 5 (lower is better)
Translates to: MAVPEVCKTHKAHLVTRLNAEQY*WLMMVP
Trigger: TGGAACCATCATGAGCCACAAATATTGTTCTGCATT...AAGCCTTGTCACCAGATGTGCCTTGTGGGTTTTGCACACTTCAGGAACAGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217506.2
CDS TCA 72 bp GTAGGGAAGGGAGAAGGTGTTGAATGTATGAAAGGCTaGGTAGATGGCCCCACCTACCCAGGCAGTGACCAC +
Preference number: 6 (lower is better)
Translates to: VGKGEGVECMKG*VDGPTYPGSDH
Trigger: GTGGTCACTGCCTGGGTAGGTGGGGCCATCTACTCAGCCTTTCATACATTCAACACCTTCTCCCTTCCCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082220.5
ENSMUST00000217506.2
CDS GCA 72 bp GTAGATGGCCCCACCTACCCAGGCAGTGACCACCAATaGAGAACAATATTTGTGGCTCATGATGGTTCCATA +
Preference number: 6 (lower is better)
Translates to: VDGPTYPGSDHQ*RTIFVAHDGSI
Trigger: TATGGAACCATCATGAGCCACAAATATTGTTCTGCATTGGTGGTCACTGCCTGGGTAGGTGGGGCCATCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000082220.5
ENSMUST00000217506.2