RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR286 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059460

Ensembl transcript IDs: ENSMUST00000073612.7, ENSMUST00000205305.4

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACGCCCAAAGGATAATGTTTCAAGCCCCGCCCCCTCCACAGTCTaGCTCTCAGTCGTTCCACCATCTCTTCCGCTGTGTTCCGTGAGG +
Preference number: 1 (lower is better)
Translates to: PRPKDNVSSPAPSTV*LSVVPPSLPLCSVR
Trigger: CCTCACGGAACACAGCGGAAGAGATGGTGGAACGACTGAGAGTCAGACTGTGGAGGGGGCGGGGCTTGAAACATTATCCTTTGGGCGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 90 bp CAGTCTGACTCTCAGTCGTTCCACCATCTCTTCCGCTGTGTTCCGTaGGGCAGGCAACATGGATGTTCTGTGGAAGGACGAGTCATCTAC +
Preference number: 1 (lower is better)
Translates to: QSDSQSFHHLFRCVP*GRQHGCSVEGRVIY
Trigger: GTAGATGACTCGTCCTTCCACAGAACATCCATGTTGCCTGCCTCACGGAACACAGCGGAAGAGATGGTGGAACGACTGAGAGTCAGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 90 bp GTCGTTCCACCATCTCTTCCGCTGTGTTCCGTGAGGCAGGCAACATaGATGTTCTGTGGAAGGACGAGTCATCTACAGTCGTGTGCACTT +
Preference number: 1 (lower is better)
Translates to: VVPPSLPLCSVRQAT*MFCGRTSHLQSCAL
Trigger: AAGTGCACACGACTGTAGATGACTCGTCCTTCCACAGAACATCCATGTTGCCTGCCTCACGGAACACAGCGGAAGAGATGGTGGAACGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 90 bp GCATCAGGTCTCATTACAGATGGTTGCGAACCACCATGTGGTTGCTaGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTA +
Preference number: 1 (lower is better)
Translates to: ASGLITDGCEPPCGC*DLNSGPLEEQSVLL
Trigger: TAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCGCAACCATCTGTAATGAGACCTGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 90 bp TGTGAAGGTGTCAGATTCACTGGAACTGGAATTATAGACAAATTGTaGGCCACCATGTGGGTACTGGGAACTGAACCTGGATCCTCTGGA +
Preference number: 1 (lower is better)
Translates to: CEGVRFTGTGIIDKL*ATMWVLGTEPGSSG
Trigger: TCCAGAGGATCCAGGTTCAGTTCCCAGTACCCACATGGTGGCTCACAATTTGTCTATAATTCCAGTTCCAGTGAATCTGACACCTTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 90 bp TCTTCACGTGCATTGGTGTTTTGCCTGCATGTACGTGTCTTGGTGTaGAGGTGTCAGATTCACTGGAACTGGAATTATAGACAAATTGTG +
Preference number: 1 (lower is better)
Translates to: SSRALVFCLHVRVLV*RCQIHWNWNYRQIV
Trigger: CACAATTTGTCTATAATTCCAGTTCCAGTGAATCTGACACCTTCACACCAAGACACGTACATGCAGGCAAAACACCAATGCACGTGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR GCA 90 bp ATCATGAAAAGCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTaGTGGAAGCCAACTCAAGATATGAGCCTTAGACATCAGGAGAAA +
Preference number: 1 (lower is better)
Translates to: IMKSDYQEKSERLSF*WKPTQDMSLRHQEK
Trigger: TTTCTCCTGATGTCTAAGGCTCATATCTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGCTTTTCATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 90 bp ATTTATCTTCACGTGCATTGGTGTTTTGCCTGCATGTACGTGTCTTaGTGTGAAGGTGTCAGATTCACTGGAACTGGAATTATAGACAAA +
Preference number: 1 (lower is better)
Translates to: IYLHVHWCFACMYVS*CEGVRFTGTGIIDK
Trigger: TTTGTCTATAATTCCAGTTCCAGTGAATCTGACACCTTCACACCAAGACACGTACATGCAGGCAAAACACCAATGCACGTGAAGATAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR TCA 90 bp TCTCCCTCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATGCCCCCTCCACAGTCTaGCTCTCAGTCGTTCCACCA +
Preference number: 2 (lower is better)
Translates to: SPSSTPSSHPCSKPTPHYAPSTV*LSVVPP
Trigger: TGGTGGAACGACTGAGAGTCAGACTGTGGAGGGGGC...ATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGAGGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR TCA 90 bp TCTCCCTCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATGTGTCAAGGAAGACATaGATGTCTTTCTTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: SPSSTPSSHPCSKPTPHYVSRKT*MSFLEP
Trigger: GGGCTCCAAGAAAGACATTCATGTCTTCCTTGACAC...ATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGAGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CAA 90 bp GAGGGCATCAGGTCTCATTACAGATGGTTGCGAACCACCATGTGGTaGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCT +
Preference number: 2 (lower is better)
Translates to: EGIRSHYRWLRTTMW*LGFELRTFGRAVSA
Trigger: AGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCGCAACCATCTGTAATGAGACCTGATGCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CAA 90 bp GGTCTCATTACAGATGGTTGCGAACCACCATGTGGTTGCTGGGATTaGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCA +
Preference number: 2 (lower is better)
Translates to: GLITDGCEPPCGCWD*NSGPLEEQSVLLTA
Trigger: TGCGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCGCAACCATCTGTAATGAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR TCA 90 bp CAACCCCTAGAGCAGAAGCAAGAAGACCCTACTGAGAGAATAGATTTAAAACAAGTGCACTTAGCACCTTaGGCAGCCGCAAGTCTCGGC +
Preference number: 2 (lower is better)
Translates to: QPLEQKQEDPTERIDLKQVHLAP*AAASLG
Trigger: GCCGAGACTTGCGGCTGCTCAAGGTGCTAAGTGCAC...TTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR CCA 90 bp CAACCCCTAGAGCAGAAGCAAGAAGACCCTACTGAGAGAATAGATTTAAAACAACGTAGAGCTCTCCACTaGAGCAGGGCTAGCTCACCA +
Preference number: 2 (lower is better)
Translates to: QPLEQKQEDPTERIDLKQRRALH*SRASSP
Trigger: TGGTGAGCTAGCCCTGCTCCAGTGGAGAGCTCTACG...TTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR TCA 90 bp CAACCCCTAGAGCAGAAGCAAGAAGACCCTACTGAGAGAATAGATTTAAAACAAACTATTACAGCTTCCTaGTTTGTAACCCACCGAGTT +
Preference number: 2 (lower is better)
Translates to: QPLEQKQEDPTERIDLKQTITAS*FVTHRV
Trigger: AACTCGGTGGGTTACAAATCAGGAAGCTGTAATAGT...TTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR CCA 90 bp CAACCCCTAGAGCAGAAGCAAGAAGACCCTACTGAGAGAATAGATTTAAAACAATATCTTCACGTGCATTaGTGTTTTGCCTGCATGTAC +
Preference number: 2 (lower is better)
Translates to: QPLEQKQEDPTERIDLKQYLHVH*CFACMY
Trigger: GTACATGCAGGCAAAACACCAATGCACGTGAAGATA...TTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR TCA 90 bp ATTGTTTTCCTTTGTAAGAGTCACAGTGATCACTGGTGTCTCTTCACAGGAATAAATTACTACAAGGTCTaGGTCTGGTGTCAAGGAAGA +
Preference number: 2 (lower is better)
Translates to: IVFLCKSHSDHWCLFTGINYYKV*VWCQGR
Trigger: TCTTCCTTGACACCAGACTCAGACCTTGTAGTAATT...TATTCCTGTGAAGAGACACCAGTGATCACTGTGACTCTTACAAAGGAAAACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp AGCTTCCCACATCCCCATGGGCGTAGAGCTCTCCACTaGAGCAGGGCTAGCTCACCAAGGGGACACCACGGA +
Preference number: 3 (lower is better)
Translates to: SFPHPHGRRALH*SRASSPRGHHG
Trigger: TCCGTGGTGTCCCCTTGGTGAGCTAGCCCTGCTCCAGTGGAGAGCTCTACGCCCATGGGGATGTGGGAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp GAGCCAGTAGCAGTGAGTGCCCTAGGCCTGGAGCGGTaGCACACAGACCAGAGAAATGTCAAATTGCAAGAC +
Preference number: 3 (lower is better)
Translates to: EPVAVSALGLER*HTDQRNVKLQD
Trigger: GTCTTGCAATTTGACATTTCTCTGGTCTGTGTGCCACCGCTCCAGGCCTAGGGCACTCACTGCTACTGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp GGACGAGTCATCTACAGTCGTGTGCACTTAGCACCTTaGGCAGCCGCAAGTCTCGGCATCAGCTGTGGTTTT +
Preference number: 3 (lower is better)
Translates to: GRVIYSRVHLAP*AAASLGISCGF
Trigger: AAAACCACAGCTGATGCCGAGACTTGCGGCTGCTCAAGGTGCTAAGTGCACACGACTGTAGATGACTCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp TCTCAGTCGTTCCACCATCTCTTCCGCTGTGTTCCGTaGGGCAGGCAACATGGATGTTCTGTGGAAGGACGA +
Preference number: 3 (lower is better)
Translates to: SQSFHHLFRCVP*GRQHGCSVEGR
Trigger: TCGTCCTTCCACAGAACATCCATGTTGCCTGCCTCACGGAACACAGCGGAAGAGATGGTGGAACGACTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp AAGGATAATGTTTCAAGCCCCGCCCCCTCCACAGTCTaGCTCTCAGTCGTTCCACCATCTCTTCCGCTGTGT +
Preference number: 3 (lower is better)
Translates to: KDNVSSPAPSTV*LSVVPPSLPLC
Trigger: ACACAGCGGAAGAGATGGTGGAACGACTGAGAGTCAGACTGTGGAGGGGGCGGGGCTTGAAACATTATCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp TTGGGAGGCAGAGGCAGAGGCAGGCCAGTCTGCCCATaGACAAAGACAGCTTTGAACACAAAAGCGCCTTGT +
Preference number: 3 (lower is better)
Translates to: LGGRGRGRPVCP*TKTALNTKAPC
Trigger: ACAAGGCGCTTTTGTGTTCAAAGCTGTCTTTGTTCATGGGCAGACTGGCCTGCCTCTGCCTCTGCCTCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp CCATCTCTTCCGCTGTGTTCCGTGAGGCAGGCAACATaGATGTTCTGTGGAAGGACGAGTCATCTACAGTCG +
Preference number: 3 (lower is better)
Translates to: PSLPLCSVRQAT*MFCGRTSHLQS
Trigger: CGACTGTAGATGACTCGTCCTTCCACAGAACATCCATGTTGCCTGCCTCACGGAACACAGCGGAAGAGATGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp TCCCTACCCTGGGTCGCCACTTTGTATCTGTGTGGATaGGTTGGTAGGAGTGAAAGAATGGGCCTGTCTGTT +
Preference number: 3 (lower is better)
Translates to: SLPWVATLYLCG*VGRSERMGLSV
Trigger: AACAGACAGGCCCATTCTTTCACTCCTACCAACCCATCCACACAGATACAAAGTGGCGACCCAGGGTAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp AGACAAATTGTGAGCCACCATGTGGGTACTGGGAACTaGACCTGGATCCTCTGGAAGAGCAGCCAGTGCTTT +
Preference number: 3 (lower is better)
Translates to: RQIVSHHVGTGN*TWILWKSSQCF
Trigger: AAAGCACTGGCTGCTCTTCCAGAGGATCCAGGTTCAGTTCCCAGTACCCACATGGTGGCTCACAATTTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR GCA 72 bp TGGAGCGGTGGCACACAGACCAGAGAAATGTCAAATTaGAAGACCTCACAGGGTATGGAAGTTGCTGCTCTG +
Preference number: 3 (lower is better)
Translates to: WSGGTQTREMSN*KTSQGMEVAAL
Trigger: CAGAGCAGCAACTTCCATACCCTGTGAGGTCTTGCAATTTGACATTTCTCTGGTCTGTGTGCCACCGCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR GCA 72 bp GATCCGGGTGTAGAGTTCCTTCTCCAGCACCACATCTaGCTGCGTGTTGTGATGCTTTCTGTTGTGACAATA +
Preference number: 3 (lower is better)
Translates to: DPGVEFLLQHHI*LRVVMLSVVTI
Trigger: TATTGTCACAACAGAAAGCATCACAACACGCAGGCAGATGTGGTGCTGGAGAAGGAACTCTACACCCGGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR-3UTR CAA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGTGGAGCCCTCCAGCATaGGGAATAAAGGCTAGAAAG +
Preference number: 3 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKWSPPA*GIKARK
Trigger: CTTTCTAGCCTTTATTCCCAATGCTGGAGGGCTCCA...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp TTGCTGCTCTGCCAGCACATGAAGAATAAACAGGCTTaGCTTGACATAACCACTGAGCCTACCAGCCTTCAT +
Preference number: 3 (lower is better)
Translates to: LLLCQHMKNKQA*LDITTEPTSLH
Trigger: ATGAAGGCTGGTAGGCTCAGTGGTTATGTCAAGTCAAGCCTGTTTATTCTTCATGTGCTGGCAGAGCAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp CACGTGCATTGGTGTTTTGCCTGCATGTACGTGTCTTaGTGTGAAGGTGTCAGATTCACTGGAACTGGAATT +
Preference number: 3 (lower is better)
Translates to: HVHWCFACMYVS*CEGVRFTGTGI
Trigger: AATTCCAGTTCCAGTGAATCTGACACCTTCACACCAAGACACGTACATGCAGGCAAAACACCAATGCACGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp ATCAGGTCTCATTACAGATGGTTGCGAACCACCATGTaGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGA +
Preference number: 3 (lower is better)
Translates to: IRSHYRWLRTTM*LLGFELRTFGR
Trigger: TCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCGCAACCATCTGTAATGAGACCTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp GTCAGATTCACTGGAACTGGAATTATAGACAAATTGTaGGCCACCATGTGGGTACTGGGAACTGAACCTGGA +
Preference number: 3 (lower is better)
Translates to: VRFTGTGIIDKL*ATMWVLGTEPG
Trigger: TCCAGGTTCAGTTCCCAGTACCCACATGGTGGCTCACAATTTGTCTATAATTCCAGTTCCAGTGAATCTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp AGGACAACCCCTAGAGCAGAAGCAAGAAGACCCTACTaGGAGAATAGATTTAAAACAACATCCCTACCCTGG +
Preference number: 3 (lower is better)
Translates to: RTTPRAEARRPY*ENRFKTTSLPW
Trigger: CCAGGGTAGGGATGTTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp CCACTGAGCCTACCAGCCTTCATCTCTAAGTATAAATaGCACAAAGGACAACCCCTAGAGCAGAAGCAAGAA +
Preference number: 3 (lower is better)
Translates to: PLSLPAFISKYK*HKGQPLEQKQE
Trigger: TTCTTGCTTCTGCTCTAGGGGTTGTCCTTTGTGTCATTTATACTTAGAGATGAAGGCTGGTAGGCTCAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp GCATTGGTGTTTTGCCTGCATGTACGTGTCTTGGTGTaGAGGTGTCAGATTCACTGGAACTGGAATTATAGA +
Preference number: 3 (lower is better)
Translates to: ALVFCLHVRVLV*RCQIHWNWNYR
Trigger: TCTATAATTCCAGTTCCAGTGAATCTGACACCTTCACACCAAGACACGTACATGCAGGCAAAACACCAATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp ATGAACAAAGACAGCTTTGAACACAAAAGCGCCTTGTaGAGCAAGGTGAACAGGGATACAGCACTTTACTGC +
Preference number: 3 (lower is better)
Translates to: MNKDSFEHKSAL*SKVNRDTALYC
Trigger: GCAGTAAAGTGCTGTATCCCTGTTCACCTTGCTTCACAAGGCGCTTTTGTGTTCAAAGCTGTCTTTGTTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR GCA 72 bp AGCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTaGTGGAAGCCAACTCAAGATATGAGCCTTAGACAT +
Preference number: 3 (lower is better)
Translates to: SDYQEKSERLSF*WKPTQDMSLRH
Trigger: ATGTCTAAGGCTCATATCTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CCA 72 bp GATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTaGAAGCCAACTCAAGATATGAGCCTTAGACATCAG +
Preference number: 3 (lower is better)
Translates to: DYQEKSERLSFC*KPTQDMSLRHQ
Trigger: CTGATGTCTAAGGCTCATATCTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR TCA 72 bp TCTCGGCATCAGCTGTGGTTTTCATGTAATAGCGAATaGTTTCATGCATTAATTAAGCCTCTGTGCTCGAAC +
Preference number: 3 (lower is better)
Translates to: SRHQLWFSCNSE*FHALIKPLCSN
Trigger: GTTCGAGCACAGAGGCTTAATTAATGCATGAAATCATTCGCTATTACATGAAAACCACAGCTGATGCCGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR GCA 72 bp GATTTTATTTATCTTCACGTGCATTGGTGTTTTGCCTaGATGTACGTGTCTTGGTGTGAAGGTGTCAGATTC +
Preference number: 3 (lower is better)
Translates to: DFIYLHVHWCFA*MYVSWCEGVRF
Trigger: GAATCTGACACCTTCACACCAAGACACGTACATGCAGGCAAAACACCAATGCACGTGAAGATAAATAAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR GCA 90 bp TCTCCCTCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATTGTCTTCCCCCTACCTaGGGAGGAGGCCCTGCGGAG +
Preference number: 4 (lower is better)
Translates to: SPSSTPSSHPCSKPTPHYCLPPT*GGGPAE
Trigger: CTCCGCAGGGCCTCCTCCGCAGGTAGGGGGAAGACA...ATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGAGGGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp TCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATTACAGCGAGCCAGGAAGAGGGTaGAGAGCAATGCCCGTGTGG +
Preference number: 4 (lower is better)
Translates to: SSTPSSHPCSKPTPHYYSEPGRG*RAMPVW
Trigger: CCACACGGGCATTGCTCTTCACCCTCTTCCTGGCTC...GCTGTAATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp TCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATTACAGCAGGCCCTGCGGAGGATaGAAGCCAGAATGCGGGCAT +
Preference number: 4 (lower is better)
Translates to: SSTPSSHPCSKPTPHYYSRPCGG*KPECGH
Trigger: ATGCCCGCATTCTGGCTTCCATCCTCCGCAGGGCCT...GCTGTAATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR GCA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGCTGCCTGAGCCAGGCTaGCTCTCCCAAGAGCCCGCC +
Preference number: 4 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKLPEPG*LSQEPA
Trigger: GGCGGGCTCTTGGGAGAGGCAGCCTGGCTCAGGCAG...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp TCTCCCTCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATTTCTTGGTCACCAGATaGACCAACATCTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: SPSSTPSSHPCSKPTPHYFLVTR*TNICGM
Trigger: CATCCCACAGATGTTGGTCCATCTGGTGACCAAGAA...ATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGAGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp TCTGGTGTCAAGGAAGACATGAATGTCTTTCTTGGAGCCCTCCAGCATTGGGAACAAGAGCCCGCCCCATaGCCCCCTTCATTTCCTTGT +
Preference number: 4 (lower is better)
Translates to: SGVKEDMNVFLGALQHWEQEPAP*PPSFPC
Trigger: ACAAGGAAATGAAGGGGGCCATGGGGCGGGCTCTTG...TTCCCAATGCTGGAGGGCTCCAAGAAAGACATTCATGTCTTCCTTGACACCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp TCTGGTGTCAAGGAAGACATGAATGTCTTTCTTGGAGCCCTCCAGCATTGGGAACAAAGCCCACGAGGATaGACTCAGTCACAGTGCTAC +
Preference number: 4 (lower is better)
Translates to: SGVKEDMNVFLGALQHWEQSPRG*TQSQCY
Trigger: GTAGCACTGTGACTGAGTTCATCCTCGTGGGCTTTG...TTCCCAATGCTGGAGGGCTCCAAGAAAGACATTCATGTCTTCCTTGACACCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGAAGAACACACCAGCCTaGCACACACCTTCTGGCTCA +
Preference number: 4 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKKNTPA*HTPSGS
Trigger: TGAGCCAGAAGGTGTGTGTCAGGCTGGTGTGTTCTT...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR GCA 90 bp ATTGTTTTCCTTTGTAAGAGTCACAGTGATCACTGGTGTCTCTTCACAGGAATACTGCGGAGGAGGCCCTaGGGAGGATGGAAGCCAGAA +
Preference number: 4 (lower is better)
Translates to: IVFLCKSHSDHWCLFTGILRRRP*GGWKPE
Trigger: TTCTGGCTTCCATCCTCCGCAGGGCCTCCTCCGCAG...TATTCCTGTGAAGAGACACCAGTGATCACTGTGACTCTTACAAAGGAAAACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp TCTCCCTCTTCCACACCAAGCTCCCATCCTTGCAGTAAGCCCACTCCCCACTATAAGAAGTTCTCTATGTaGTTTTCTCTGCAGAACGGA +
Preference number: 4 (lower is better)
Translates to: SPSSTPSSHPCSKPTPHYKKFSM*FSLQNG
Trigger: TCCGTTCTGCAGAGAAAACCACATAGAGAACTTCTT...ATAGTGGGGAGTGGGCTTACTGCAAGGATGGGAGCTTGGTGTGGAAGAGGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CAA 72 bp TACCCTGGGTCGCCACTTTGTATCTGTGTGGATGGGTaGGTAGGAGTGAAAGAATGGGCCTGTCTGTTTATT +
Preference number: 4 (lower is better)
Translates to: YPGSPLCICVDG*VGVKEWACLFI
Trigger: AATAAACAGACAGGCCCATTCTTTCACTCCTACCAACCCATCCACACAGATACAAAGTGGCGACCCAGGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGGCAAAGGAGACAGTGTaGTTCTTGGTCACCAGATGG +
Preference number: 4 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKAKETV*FLVTRW
Trigger: CCATCTGGTGACCAAGAACCACACTGTCTCCTTTGC...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGCAAGAAGGATACCATTaGCCATCCCAAAGATCCAGG +
Preference number: 4 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKQEGYH*PSQRSR
Trigger: CCTGGATCTTTGGGATGGTCAATGGTATCCTTCTTG...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp CAACCCCTAGAGCAGAAGCAAGAAGACCCTACTGAGAGAATAGATTTAAAACAAAGATCACCTTCAGACTaGACTCAGGGTCCCCACAGG +
Preference number: 4 (lower is better)
Translates to: QPLEQKQEDPTERIDLKQRSPSD*TQGPHR
Trigger: CCTGTGGGGACCCTGAGTTCAGTCTGAAGGTGATCT...TTGTTTTAAATCTATTCTCTCAGTAGGGTCTTCTTGCTTCTGCTCTAGGGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp GCGATTACCAAGAGAAATCAGAGAGGCTCAGTTTTTGCTGGAAGCCAACTCAAGATGGACCAACATCTGTaGGATGGTGGTGGTGATGAA +
Preference number: 4 (lower is better)
Translates to: AITKRNQRGSVFAGSQLKMDQHL*DGGGDE
Trigger: TTCATCACCACCACCATCCCACAGATGTTGGTCCAT...CTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCTCTTGGTAATCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CAA 72 bp AGATTTAAAACAACATCCCTACCCTGGGTCGCCACTTaGTATCTGTGTGGATGGGTTGGTAGGAGTGAAAGA +
Preference number: 4 (lower is better)
Translates to: RFKTTSLPWVAT*YLCGWVGRSER
Trigger: TCTTTCACTCCTACCAACCCATCCACACAGATACAAAGTGGCGACCCAGGGTAGGGATGTTGTTTTAAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
3UTR CAA 72 bp GGAAGACATGAATGTCTTTCTTGGAGCCCTCCAGCATaGGGAATAAAGGCTAGAAAGGGGATAAGCATCTAT +
Preference number: 4 (lower is better)
Translates to: GRHECLSWSPPA*GIKARKGISIY
Trigger: ATAGATGCTTATCCCCTTTCTAGCCTTTATTCCCAATGCTGGAGGGCTCCAAGAAAGACATTCATGTCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR TCA 90 bp ATTGTTTTCCTTTGTAAGAGTCACAGTGATCACTGGTGTCTCTTCACAGGAATAACACCTTCTGGCTCATaGTCTGGGCATAGTTCAGTG +
Preference number: 4 (lower is better)
Translates to: IVFLCKSHSDHWCLFTGITPSGS*SGHSSV
Trigger: CACTGAACTATGCCCAGATCATGAGCCAGAAGGTGT...TATTCCTGTGAAGAGACACCAGTGATCACTGTGACTCTTACAAAGGAAAACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS-3UTR CCA 90 bp ATTGTTTTCCTTTGTAAGAGTCACAGTGATCACTGGTGTCTCTTCACAGGAATATCATGTAAGAGAACATaGCTGAGGTATAGAAAAAGA +
Preference number: 4 (lower is better)
Translates to: IVFLCKSHSDHWCLFTGISCKRT*LRYRKR
Trigger: TCTTTTTCTATACCTCAGCCATGTTCTCTTACATGA...TATTCCTGTGAAGAGACACCAGTGATCACTGTGACTCTTACAAAGGAAAACAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS TCA 90 bp GCAATGCCCGTGTGGAAGGGGAGCTCTGCTCAAAGCCCACGAGGATaGACTCAGTCACAGTGCTACTGCTGTTCCTCGAGTCTCCCTTTT +
Preference number: 5 (lower is better)
Translates to: AMPVWKGSSAQSPRG*TQSQCYCCSSSLPF
Trigger: AAAAGGGAGACTCGAGGAACAGCAGTAGCACTGTGACTGAGTTCATCCTCGTGGGCTTTGAGCAGAGCTCCCCTTCCACACGGGCATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS-3UTR CAA 90 bp TCTGGTGTCAAGGAAGACATGAATGTCTTTCTTGGAGCCCTCCAGCATTGGGAATCAAGAAGGATACCATaGACCATCCCAAAGATCCAG +
Preference number: 5 (lower is better)
Translates to: SGVKEDMNVFLGALQHWESRRIP*TIPKIQ
Trigger: CTGGATCTTTGGGATGGTCAATGGTATCCTTCTTGA...TTCCCAATGCTGGAGGGCTCCAAGAAAGACATTCATGTCTTCCTTGACACCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS GCA 90 bp TCACTATGGGAGCCTCACAGAAGAAGTTCTCTATGTGGTTTTCTCTaGAGAACGGACCTCGGAATGTCATGTAATCAAGAAGGATACCAT +
Preference number: 5 (lower is better)
Translates to: SLWEPHRRSSLCGFL*RTDLGMSCNQEGYH
Trigger: ATGGTATCCTTCTTGATTACATGACATTCCGAGGTCCGTTCTGCAGAGAAAACCACATAGAGAACTTCTTCTGTGAGGCTCCCATAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS-3UTR CAA 90 bp ATTGTTTTCCTTTGTAAGAGTCACAGTGATCACTGGTGTCTCTTCACAGGAATAAGGAGAGAGAAAGGCTaGTCTTTGTCAGGCCCGTGT +
Preference number: 5 (lower is better)
Translates to: IVFLCKSHSDHWCLFTGIRREKG*SLSGPC
Trigger: ACACGGGCCTGACAAAGACAAGCCTTTCTCTCTCCT...TATTCCTGTGAAGAGACACCAGTGATCACTGTGACTCTTACAAAGGAAAACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073612.7
CDS GCA 72 bp TGGAGAATGTCTTCCCCCTACCTGCGGAGGAGGCCCTaGGGAGGATGGAAGCCAGAATGCGGGCATAGGAAG +
Preference number: 6 (lower is better)
Translates to: WRMSSPYLRRRP*GGWKPECGHRK
Trigger: CTTCCTATGCCCGCATTCTGGCTTCCATCCTCCGCAGGGCCTCCTCCGCAGGTAGGGGGAAGACATTCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS TCA 72 bp GTGTGGAAGGGGAGCTCTGCTCAAAGCCCACGAGGATaGACTCAGTCACAGTGCTACTGCTGTTCCTCGAGT +
Preference number: 6 (lower is better)
Translates to: VWKGSSAQSPRG*TQSQCYCCSSS
Trigger: ACTCGAGGAACAGCAGTAGCACTGTGACTGAGTTCATCCTCGTGGGCTTTGAGCAGAGCTCCCCTTCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS TCA 72 bp CACTCGGCCACACCCACACCAAAAACCAGATACATCTaGGTCAAACAGGAGGCAAAGGAGACAGTGTGGTTC +
Preference number: 6 (lower is better)
Translates to: HSATPTPKTRYI*VKQEAKETVWF
Trigger: GAACCACACTGTCTCCTTTGCCTCCTGTTTGACTCAGATGTATCTGGTTTTTGGTGTGGGTGTGGCCGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS TCA 72 bp GACCTCGGAATGTCATGTAATCAAGAAGGATACCATTaGCCATCCCAAAGATCCAGGAAGAACACACCAGCC +
Preference number: 6 (lower is better)
Translates to: DLGMSCNQEGYH*PSQRSRKNTPA
Trigger: GGCTGGTGTGTTCTTCCTGGATCTTTGGGATGGTCAATGGTATCCTTCTTGATTACATGACATTCCGAGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS CCA 72 bp ATCACTATGGGAGCCTCACAGAAGAAGTTCTCTATGTaGTTTTCTCTGCAGAACGGACCTCGGAATGTCATG +
Preference number: 6 (lower is better)
Translates to: ITMGASQKKFSM*FSLQNGPRNVM
Trigger: CATGACATTCCGAGGTCCGTTCTGCAGAGAAAACCACATAGAGAACTTCTTCTGTGAGGCTCCCATAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4
CDS GCA 72 bp GAGCCTCACAGAAGAAGTTCTCTATGTGGTTTTCTCTaGAGAACGGACCTCGGAATGTCATGTAATCAAGAA +
Preference number: 6 (lower is better)
Translates to: EPHRRSSLCGFL*RTDLGMSCNQE
Trigger: TTCTTGATTACATGACATTCCGAGGTCCGTTCTGCAGAGAAAACCACATAGAGAACTTCTTCTGTGAGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073612.7
ENSMUST00000205305.4