Pregenerated sensors for OLFR223 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048919Ensembl transcript IDs: ENSMUST00000061293.5, ENSMUST00000215626.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGACAGAAGTCTCTGGTCAAAAGAGTCTTTGTTGTTATCAGAGTaGCGGACTTTGAGAGGTGAGAATTCCAGCCTAAGGTCTTACGTT | + |
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Preference number: 1 (lower is better) Translates to: EDRSLWSKESLLLSE*RTLRGENSSLRSYV Trigger: AACGTAAGACCTTAGGCTGGAATTCTCACCTCTCAAAGTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CCA 90 bp | AAAAGTGCAGTGGCCCTATCTAGAATTCTAGAAGACAGAAGTCTCTaGTCAAAAGAGTCTTTGTTGTTATCAGAGTGGCGGACTTTGAGA | + |
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Preference number: 1 (lower is better) Translates to: KSAVALSRILEDRSL*SKESLLLSEWRTLR Trigger: TCTCAAAGTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTCTAGAATTCTAGATAGGGCCACTGCACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR TCA 90 bp | TTGACAGAGGCATGGATGGATGACTTATCAGTGGCTACATCACTGAAGGGACTGGCGGACTTTGAGAGGTaGGAATTCCAGCCTAAGGTC | + |
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Preference number: 2 (lower is better) Translates to: LTEAWMDDLSVATSLKGLADFER*EFQPKV Trigger: GACCTTAGGCTGGAATTCTCACCTCTCAAAGTCCGC...CAGTCCCTTCAGTGATGTAGCCACTGATAAGTCATCCATCCATGCCTCTGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGGATAGAAATATCTGGGAAGAGTCCAGAAAAGTGCAGTGGCCCTATCTAAAGGTCTTACGTTTTTaGAAAAGCAAACCTGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: SVDRNIWEESRKVQWPYLKVLRF*KSKPAS Trigger: GCTGGCAGGTTTGCTTTTCCAAAAACGTAAGACCTT...TAGATAGGGCCACTGCACTTTTCTGGACTCTTCCCAGATATTTCTATCCACAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGGTGATCCTGTTCTTCCCAACTGGTCATCTTCAACTTTCACGTGGGTTGAAGACAGAAGTCTCTaGTCAAAAGAGTCTTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: TSGDPVLPNWSSSTFTWVEDRSL*SKESLL Trigger: CAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTC...AACCCACGTGAAAGTTGAAGATGACCAGTTGGGAAGAACAGGATCACCAGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CAA 90 bp | ATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTATGGACTATaGACAGAGGCATGGATGGATGACTTATCAGTGGCTACATCACTG | + |
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Preference number: 2 (lower is better) Translates to: MSLFGVIYRNVGYGL*TEAWMDDLSVATSL Trigger: CAGTGATGTAGCCACTGATAAGTCATCCATCCATGCCTCTGTCAATAGTCCATAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAGTGCAGTGGCCCTATCTAGAATTCTAGAAGACAGAAGTCTCTGGTCAAAATTGTTGTTATCAGAGTaGCGGACTTTGAGAGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: KSAVALSRILEDRSLWSKLLLSE*RTLRGE Trigger: CTCACCTCTCAAAGTCCGCCACTCTGATAACAACAA...TTTTGACCAGAGACTTCTGTCTTCTAGAATTCTAGATAGGGCCACTGCACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR CCA 90 bp | TTGATGACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTATGGACTTCCCTGTTCCCTCTGTaGATAGAAATATCTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: LMTNEFIWGYLQERRLWTSLFPL*IEISGK Trigger: CTTCCCAGATATTTCTATCCACAGAGGGAACAGGGA...AGTCCATAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGTCATCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR-3UTR CCA 90 bp | GTTTGTTTGATGACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTAGTGGATAGAAATATCTaGGAAGAGTCCAGAAAAGTG | + |
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Preference number: 2 (lower is better) Translates to: VCLMTNEFIWGYLQERRLVDRNI*EESRKV Trigger: CACTTTTCTGGACTCTTCCCAGATATTTCTATCCAC...TAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGTCATCAAACAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR TCA 72 bp | CGTAGGCTATGGACTATTGACAGAGGCATGGATGGATaGCTTATCAGTGGCTACATCACTGAAGGGACTGTG | + |
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Preference number: 3 (lower is better) Translates to: RRLWTIDRGMDG*LISGYITEGTV Trigger: CACAGTCCCTTCAGTGATGTAGCCACTGATAAGTCATCCATCCATGCCTCTGTCAATAGTCCATAGCCTACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CCA 72 bp | GGCCATTTCCCTGTTCCCTCTGTGGATAGAAATATCTaGGAAGAGTCCAGAAAAGTGCAGTGGCCCTATCTA | + |
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Preference number: 3 (lower is better) Translates to: GHFPVPSVDRNI*EESRKVQWPYL Trigger: TAGATAGGGCCACTGCACTTTTCTGGACTCTTCCCAGATATTTCTATCCACAGAGGGAACAGGGAAATGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CCA 72 bp | AGTCTCTGGTCAAAAGAGTCTTTGTTGTTATCAGAGTaGCGGACTTTGAGAGGTGAGAATTCCAGCCTAAGG | + |
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Preference number: 3 (lower is better) Translates to: SLWSKESLLLSE*RTLRGENSSLR Trigger: CCTTAGGCTGGAATTCTCACCTCTCAAAGTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CCA 72 bp | TACAGGAACGTAGGCTATGGACTATTGACAGAGGCATaGATGGATGACTTATCAGTGGCTACATCACTGAAG | + |
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Preference number: 3 (lower is better) Translates to: YRNVGYGLLTEA*MDDLSVATSLK Trigger: CTTCAGTGATGTAGCCACTGATAAGTCATCCATCCATGCCTCTGTCAATAGTCCATAGCCTACGTTCCTGTA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | GTTCCCTCTGTGGATAGAAATATCTGGGAAGAGTCCAGAAAAGTGCAGTGGCCCGGGACAGGTCGTTTGTaGTGGTGTCACTACATGCCA | + |
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Preference number: 4 (lower is better) Translates to: VPSVDRNIWEESRKVQWPGTGRL*WCHYMP Trigger: TGGCATGTAGTGACACCACCACAAACGACCTGTCCC...GGGCCACTGCACTTTTCTGGACTCTTCCCAGATATTTCTATCCACAGAGGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGTGGCCCTATCTAGAATTCTAGAAGACAGAAGTCTCTGGTCAAAAGGCCCAGCATACAGCTaGCAGCCACACGCATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: KSAVALSRILEDRSLWSKGPAYS*QPHACP Trigger: TGGGCATGCGTGTGGCTGGCAGCTGTATGCTGGGCC...TTTTGACCAGAGACTTCTGTCTTCTAGAATTCTAGATAGGGCCACTGCACTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | TTATCAGAGTGGCGGACTTTGAGAGGTGAGAATTCCAGCCTAAGGTCTTACGTTATGTGCTCAAAGCCTTaGGCCTTCCCTCAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: LSEWRTLRGENSSLRSYVMCSKP*AFPQLR Trigger: CCTCAGCTGAGGGAAGGCGCAAGGCTTTGAGCACAT...AACGTAAGACCTTAGGCTGGAATTCTCACCTCTCAAAGTCCGCCACTCTGATAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | AGAAGACAGAAGTCTCTGGTCAAAAGAGTCTTTGTTGTTATCAGAGTGGCGGACCTTGAACCAGAGAATTaGCCAGGCCACTGGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RRQKSLVKRVFVVIRVADLEPEN*PGHWPS Trigger: GCTGGGCCAGTGGCCTGGCCAATTCTCTGGTTCAAG...GTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | TTGACAGAGGCATGGATGGATGACTTATCAGTGGCTACATCACTGAAGGGACTGGGGAAACTCACATTCTaGCTTTCTGTGGTCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: LTEAWMDDLSVATSLKGLGKLTF*LSVVTC Trigger: GCAGGTGACCACAGAAAGGCAGAATGTGAGTTTCCC...CAGTCCCTTCAGTGATGTAGCCACTGATAAGTCATCCATCCATGCCTCTGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | TCTGTGGATAGAAATATCTGGGAAGAGTCCAGAAAAGTGCAGTGGCCCTATCTATGCCAGCCACACGCATaGCCAGAGATGCATGATGAG | + |
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Preference number: 4 (lower is better) Translates to: SVDRNIWEESRKVQWPYLCQPHA*PEMHDE Trigger: CTCATCATGCATCTCTGGGCATGCGTGTGGCTGGCA...TAGATAGGGCCACTGCACTTTTCTGGACTCTTCCCAGATATTTCTATCCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | AGTTTATTTGGGGTTATTTACAGGAACGTAGGCTATGGACTATTGACAGAGGCAGCAGAGCGCTTTCGGTaGAGCTGGTCCAGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SLFGVIYRNVGYGLLTEAAERFR*SWSSGR Trigger: TCTTCCACTGGACCAGCTGCACCGAAAGCGCTCTGC...TGCCTCTGTCAATAGTCCATAGCCTACGTTCCTGTAAATAACCCCAAATAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | AGAAGACAGAAGTCTCTGGTCAAAAGAGTCTTTGTTGTTATCAGAGTGGCGGACCGAGCAAGTGAGAAGTaGATGTGCTCAAAGCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: RRQKSLVKRVFVVIRVADRASEK*MCSKPC Trigger: GCAAGGCTTTGAGCACATGCACTTCTCACTTGCTCG...GTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | GTTTGTTTGATGACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTAGGTAGGCCTGCGCAATaGAGCTCCAGGAGGCAATTG | + |
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Preference number: 4 (lower is better) Translates to: VCLMTNEFIWGYLQERRLGRPAQ*SSRRQL Trigger: CAATTGCCTCCTGGAGCTGCATTGCGCAGGCCTACC...TAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGTCATCAAACAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | GTTTGTTTGATGACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTAAATTGGCCAGGCCACTaGCCCAGCATACAGCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: VCLMTNEFIWGYLQERRLNWPGH*PSIQLP Trigger: TGGCAGCTGTATGCTGGGCCAGTGGCCTGGCCAATT...TAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGTCATCAAACAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | TCTAGAAGACAGAAGTCTCTGGTCAAAAGAGTCTTTGTTGTTATCAGAGTGGCGAAGTACATGGGTGTTTaGAGCCTAGGCTCCACCAAA | + |
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Preference number: 4 (lower is better) Translates to: SRRQKSLVKRVFVVIRVAKYMGV*SLGSTK Trigger: TTTGGTGGAGCCTAGGCTCCAAACACCCATGTACTT...CGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTCTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | AAAAGTGCAGTGGCCCTATCTAGAATTCTAGAAGACAGAAGTCTCTGGTCAAAATTGTTGCCTGGTGGCTaGAGGTACGTGTACATACCA | + |
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Preference number: 4 (lower is better) Translates to: KSAVALSRILEDRSLWSKLLPGG*RYVYIP Trigger: TGGTATGTACACGTACCTCCAGCCACCAGGCAACAA...TTTTGACCAGAGACTTCTGTCTTCTAGAATTCTAGATAGGGCCACTGCACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CAA 72 bp | TCAAAAGAGTCTTTGTTGTTATCAGAGTGGCGGACTTaGAGAGGTGAGAATTCCAGCCTAAGGTCTTACGTT | + |
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Preference number: 4 (lower is better) Translates to: SKESLLLSEWRT*RGENSSLRSYV Trigger: AACGTAAGACCTTAGGCTGGAATTCTCACCTCTCAAAGTCCGCCACTCTGATAACAACAAAGACTCTTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| 3UTR CAA 72 bp | CTAGAAGACAGAAGTCTCTGGTCAAAAGAGTCTTTGTaGTTATCAGAGTGGCGGACTTTGAGAGGTGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: LEDRSLWSKESL*LSEWRTLRGEN Trigger: ATTCTCACCTCTCAAAGTCCGCCACTCTGATAACAACAAAGACTCTTTTGACCAGAGACTTCTGTCTTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR TCA 90 bp | TATATCCGTCTCACTTCTGGTGATCCTGTTCTTCCCAACTGGTCATCTTCAACTTGTTTCCTATCATGGTaGAGATGTAGGAGATCAGAA | + |
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Preference number: 4 (lower is better) Translates to: YIRLTSGDPVLPNWSSSTCFLSW*RCRRSE Trigger: TTCTGATCTCCTACATCTTCACCATGATAGGAAACA...AGTTGAAGATGACCAGTTGGGAAGAACAGGATCACCAGAAGTGAGACGGATATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CCA 90 bp | ACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTATGGACTATTGACACCTCACAGAAGAAGTaGTCCAGTGTGTTTTTCGCA | + |
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Preference number: 4 (lower is better) Translates to: TNEFIWGYLQERRLWTIDTSQKK*SSVFFA Trigger: TGCGAAAAACACACTGGACCACTTCTTCTGTGAGGT...GTCAATAGTCCATAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR GCA 90 bp | CATGTGACCAAAGAGCAATTACTAGAAGGGATTTATAGACAACACTTTTCTTTCGGTGGTGTCACTACATaGCAGTTTAATCAAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: HVTKEQLLEGIYRQHFSFGGVTT*QFNQSR Trigger: CCTGCTTTGATTAAACTGGCATGTAGTGACACCACC...GAAAGAAAAGTGTTGTCTATAAATCCCTTCTAGTAATTGCTCTTTGGTCACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS GCA 90 bp | ATTGGCCAGGCCACTGGCCCAGCATACAGCTGCCAGCCACACGCATaGCCAGAGATGCATGATGAGCACATATCGGAGGGGACAGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: IGQATGPAYSCQPHA*PEMHDEHISEGTAD Trigger: ATCTGCTGTCCCCTCCGATATGTGCTCATCATGCATCTCTGGGCATGCGTGTGGCTGGCAGCTGTATGCTGGGCCAGTGGCCTGGCCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS GCA 90 bp | AGCTTGAACCAGAGAATTGGCCAGGCCACTGGCCCAGCATACAGCTaGCAGCCACACGCATGCCCAGAGATGCATGATGAGCACATATCG | + |
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Preference number: 5 (lower is better) Translates to: SLNQRIGQATGPAYS*QPHACPEMHDEHIS Trigger: CGATATGTGCTCATCATGCATCTCTGGGCATGCGTGTGGCTGGCAGCTGTATGCTGGGCCAGTGGCCTGGCCAATTCTCTGGTTCAAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS CCA 90 bp | GACACAGTAGAAGAGGGACAGGAACTCGGACTGAGTGTTGTTGCCTaGTGGCTGGAGGTACGTGTACATACCAGGTCCAAAGTACATGGT | + |
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Preference number: 5 (lower is better) Translates to: DTVEEGQELGLSVVA*WLEVRVHTRSKVHG Trigger: ACCATGTACTTTGGACCTGGTATGTACACGTACCTCCAGCCACCAGGCAACAACACTCAGTCCGAGTTCCTGTCCCTCTTCTACTGTGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS-3UTR CAA 90 bp | AAAAGTGCAGTGGCCCTATCTAGAATTCTAGAAGACAGAAGTCTCTGGTCAAAACATGTGCTCAAAGCCTaGCGCCTTCCCTCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: KSAVALSRILEDRSLWSKHVLKA*RLPSAE Trigger: CTCAGCTGAGGGAAGGCGCAAGGCTTTGAGCACATG...TTTTGACCAGAGACTTCTGTCTTCTAGAATTCTAGATAGGGCCACTGCACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CAA 90 bp | TTGATGACCAATGAGTTTATTTGGGGTTATTTACAGGAACGTAGGCTATGGACTAGCTCCAGGAGGCAATaGTCTTTTCTGGGCCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: LMTNEFIWGYLQERRLWTSSRRQ*SFLGPR Trigger: TCTGGGGCCCAGAAAAGACAATTGCCTCCTGGAGCT...AGTCCATAGCCTACGTTCCTGTAAATAACCCCAAATAAACTCATTGGTCATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS-3UTR CAA 90 bp | TTTCTTTCAGTATTCAGAAGATCTATAGGCCATTTCCCTGTTCCCTCTGTGGATGAGGGTGAGTGTAGCTaGAACCAGAGAATTGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: FLSVFRRSIGHFPVPSVDEGECS*NQRIGQ Trigger: CTGGCCAATTCTCTGGTTCAAGCTACACTCACCCTC...ATCCACAGAGGGAACAGGGAAATGGCCTATAGATCTTCTGAATACTGAAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215626.2 |
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| CDS GCA 72 bp | TGCAGCTGGTCCAGTGGAAGAGGTAGGCCTGCGCAATaGAGCTCCAGGAGGCAATTGTCTTTTCTGGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: CSWSSGRGRPAQ*SSRRQLSFLGP Trigger: GGGGCCCAGAAAAGACAATTGCCTCCTGGAGCTGCATTGCGCAGGCCTACCTCTTCCACTGGACCAGCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS GCA 72 bp | CAGAGAATTGGCCAGGCCACTGGCCCAGCATACAGCTaGCAGCCACACGCATGCCCAGAGATGCATGATGAG | + |
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Preference number: 6 (lower is better) Translates to: QRIGQATGPAYS*QPHACPEMHDE Trigger: CTCATCATGCATCTCTGGGCATGCGTGTGGCTGGCAGCTGTATGCTGGGCCAGTGGCCTGGCCAATTCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS GCA 72 bp | GATCAAAAGCCATTACTGCCAGCAGAGCGCTTTCGGTaGAGCTGGTCCAGTGGAAGAGGTAGGCCTGCGCAA | + |
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Preference number: 6 (lower is better) Translates to: DQKPLLPAERFR*SWSSGRGRPAQ Trigger: TTGCGCAGGCCTACCTCTTCCACTGGACCAGCTGCACCGAAAGCGCTCTGCTGGCAGTAATGGCTTTTGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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| CDS CAA 72 bp | TTTCGCACAAAGGGTAAGGTAGAGGGTGAGTGTAGCTaGAACCAGAGAATTGGCCAGGCCACTGGCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: FRTKGKVEGECS*NQRIGQATGPA Trigger: TGCTGGGCCAGTGGCCTGGCCAATTCTCTGGTTCAAGCTACACTCACCCTCTACCTTACCCTTTGTGCGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061293.5 ENSMUST00000215626.2 |
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