RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR213 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000081649

Ensembl transcript IDs: ENSMUST00000121958.2, ENSMUST00000220008.2

Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTaGTTACTCCTATGGTCACAGTCAGCTGCCTTTTCCAGACAGCCC +
Preference number: 1 (lower is better)
Translates to: QGRRLKWKWQKAGPC*LLLWSQSAAFSRQP
Trigger: GGGCTGTCTGGAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 90 bp AGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTaGTGCTTACTCCTATGGTCACAGTCAGCTGCCTTTTCCAGACAG +
Preference number: 1 (lower is better)
Translates to: SQGRRLKWKWQKAGP*CLLLWSQSAAFSRQ
Trigger: CTGTCTGGAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 90 bp GGAAGGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTaGACCTTGCTGCTTACTCCTATGGTCACAGTCAGCTGCCTTTTC +
Preference number: 1 (lower is better)
Translates to: GRKPRQEAEVEMAEG*TLLLTPMVTVSCLF
Trigger: GAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 90 bp GTTTGTCCTTTCTATAATATCAGGGTGCCCTGGTTAGCGTTTGGTTaGTGTGATAAACACCAAGGCCAAAAGCAACTTGGGGCAGAAAAA +
Preference number: 1 (lower is better)
Translates to: VCPFYNIRVPWLAFG*CDKHQGQKQLGAEK
Trigger: TTTTTCTGCCCCAAGTTGCTTTTGGCCTTGGTGTTTATCACAGCAACCAAACGCTAACCAGGGCACCCTGATATTATAGAAAGGACAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 90 bp ATATGTGGGCTCATTCCCCTTCATTCTCCACATAGAAAGATTTCCTaGTCCACACTGTCCCTATCACTCAATTTCTGGTTAGTCTTCATA +
Preference number: 1 (lower is better)
Translates to: ICGLIPLHSPHRKIS*STLSLSLNFWLVFI
Trigger: TATGAAGACTAACCAGAAATTGAGTGATAGGGACAGTGTGGACCAGGAAATCTTTCTATGTGGAGAATGAAGGGGAATGAGCCCACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 90 bp AAGCCCCAGTCTCTCTTTGTTCCTCCATCACTAAAAGAGGATACCTaGAATCAGACCAAAGCCACACATCAAATAAATGCATGGATAATT +
Preference number: 1 (lower is better)
Translates to: KPQSLFVPPSLKEDT*NQTKATHQINAWII
Trigger: AATTATCCATGCATTTATTTGATGTGTGGCTTTGGTCTGATTTCAGGTATCCTCTTTTAGTGATGGAGGAACAAAGAGAGACTGGGGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 90 bp GACAGACACAATTCTGAACGCTTACTATTCTCCCCTGTTAATAACTaGAGCAATGACAATAGAACTTCCAACCACAGTCGTGTGTTCTTT +
Preference number: 1 (lower is better)
Translates to: DRHNSERLLFSPVNN*SNDNRTSNHSRVFF
Trigger: AAAGAACACACGACTGTGGTTGGAAGTTCTATTGTCATTGCTTCAGTTATTAACAGGGGAGAATAGTAAGCGTTCAGAATTGTGTCTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 90 bp GCAAAATACAAGAATCTGCTAATTAGTCAAGCCCTGTTTGTTCACTaGTGGACAGACACAATTCTGAACGCTTACTATTCTCCCCTGTTA +
Preference number: 1 (lower is better)
Translates to: AKYKNLLISQALFVH*WTDTILNAYYSPLL
Trigger: TAACAGGGGAGAATAGTAAGCGTTCAGAATTGTGTCTGTCCATCAGTGAACAAACAGGGCTTGACTAATTAGCAGATTCTTGTATTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 90 bp TTATTTGCATTTCATCAACATGGAGACCAGCATACAACTCTAGTCTaGTTAACAATCCATAATTCCTGTGGCCTTTTGTTGTTCTTGCAT +
Preference number: 1 (lower is better)
Translates to: LFAFHQHGDQHTTLV*LTIHNSCGLLLFLH
Trigger: ATGCAAGAACAACAAAAGGCCACAGGAATTATGGATTGTTAAGCAGACTAGAGTTGTATGCTGGTCTCCATGTTGATGAAATGCAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 90 bp CATAGAAAGATTTCCTGGTCCACACTGTCCCTATCACTCAATTTCTaGTTAGTCTTCATAGCTTTAAACATCTTAGGAGTCACTTTAAAG +
Preference number: 1 (lower is better)
Translates to: HRKISWSTLSLSLNF*LVFIALNILGVTLK
Trigger: CTTTAAAGTGACTCCTAAGATGTTTAAAGCTATGAAGACTAACCAGAAATTGAGTGATAGGGACAGTGTGGACCAGGAAATCTTTCTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 90 bp GTATCTTTACAGTTAGGTTTCTTGCACCTCAGAGATAATTTCTACTaGATTATTTGCATTTCATCAACATGGAGACCAGCATACAACTCT +
Preference number: 1 (lower is better)
Translates to: VSLQLGFLHLRDNFY*IICISSTWRPAYNS
Trigger: AGAGTTGTATGCTGGTCTCCATGTTGATGAAATGCAAATAATTCAGTAGAAATTATCTCTGAGGTGCAAGAAACCTAACTGTAAAGATAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 90 bp AAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTaGCTGCTTACTCCTATGGTCACAGTCAGCTGCCTTTTCCAGACA +
Preference number: 2 (lower is better)
Translates to: KPRQEAEVEMAEGWT*LLTPMVTVSCLFQT
Trigger: TGTCTGGAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR GCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCCACACATCAAATAAATaGATGGATAATTGCAGACAC +
Preference number: 2 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCHTSNK*MDNCRH
Trigger: GTGTCTGCAATTATCCATGCATTTATTTGATGTGTG...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR GCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCCATACAACTCTAGTCTaGTTAACAATCCATAATTCC +
Preference number: 2 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCHTTLV*LTIHNS
Trigger: GGAATTATGGATTGTTAAGCAGACTAGAGTTGTATG...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR GCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCAGATGTTTTCCTTCTTaGTTTCTATTCAGCTTGTCT +
Preference number: 2 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCRCFPS*FLFSLS
Trigger: AGACAAGCTGAATAGAAAGCAAGAAGGAAAACATCT...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTGGCAGGAGGCTGAAGTaGAAATGGCAGAAGGCTGGA +
Preference number: 2 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLGRRLK*KWQKAG
Trigger: TCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCC...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR TCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAGCCAAGGCAGGAGGCTaGAGTGGAAATGGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRAKAGG*SGNGRR
Trigger: CCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGC...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp AGACAGCCCAGGCCTATCTGTCCTAGGAAGAGGAAAACACTACCCATGTGTGCTTGTTGTTCTTGCATTTaGGGGTTAAGAGTGAATGCA +
Preference number: 2 (lower is better)
Translates to: RQPRPICPRKRKTLPMCACCSCI*GLRVNA
Trigger: TGCATTCACTCTTAACCCCCAAATGCAAGAACAACA...AGCACACATGGGTAGTGTTTTCCTCTTCCTAGGACAGATAGGCCTGGGCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp AGACAGCCCAGGCCTATCTGTCCTAGGAAGAGGAAAACACTACCCATGTGTGCTTGCATTTCATCAACATaGAGACCAGCATACAACTCT +
Preference number: 2 (lower is better)
Translates to: RQPRPICPRKRKTLPMCACISST*RPAYNS
Trigger: AGAGTTGTATGCTGGTCTCCATGTTGATGAAATGCA...AGCACACATGGGTAGTGTTTTCCTCTTCCTAGGACAGATAGGCCTGGGCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGATTGGGTTTACCTCTGTaGTCCCAGTGTTTGCTTCCG +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRLGLPL*SQCLLP
Trigger: CGGAAGCAAACACTGGGACCACAGAGGTAAACCCAA...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR TCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAATACCCACAGCCTTCTaGTGGCAGGATATCTTCACA +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRIPTAF*WQDIFT
Trigger: TGTGAAGATATCCTGCCATCAGAAGGCTGTGGGTAT...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR GCA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTGCCTTTTGTTGTTCTTaGATTTGGGGGTTAAGAGTG +
Preference number: 2 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLAFCCS*IWGLRV
Trigger: CACTCTTAACCCCCAAATGCAAGAACAACAAAAGGC...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR TCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGACTAAAAGAGGATACCTaGAATCAGACCAAAGCCACA +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRLKEDT*NQTKAT
Trigger: TGTGGCTTTGGTCTGATTTCAGGTATCCTCTTTTAG...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTAAGGAGTCACAGCCATaGGAACTTTTTATTTCAATG +
Preference number: 2 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLKESQP*ELFISM
Trigger: CATTGAAATAAAAAGTTCCCATGGCTGTGACTCCTT...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAGTCTTAGTGCTAACATaGATGCCTGATCTCATCCAT +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRVLVLT*MPDLIH
Trigger: ATGGATGAGATCAGGCATCCATGTTAGCACTAAGAC...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 90 bp ACAACTCTAGTCTGCTTAACAATCCATAATTCCTGTGGCCTTTTGTaGTTCTTGCATTTGGGGGTTAAGAGTGAATGCAATCTGGTAAAG +
Preference number: 2 (lower is better)
Translates to: TTLVCLTIHNSCGLL*FLHLGVKSECNLVK
Trigger: CTTTACCAGATTGCATTCACTCTTAACCCCCAAATGCAAGAACAACAAAAGGCCACAGGAATTATGGATTGTTAAGCAGACTAGAGTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 90 bp CATACAACTCTAGTCTGCTTAACAATCCATAATTCCTGTGGCCTTTaGTTGTTCTTGCATTTGGGGGTTAAGAGTGAATGCAATCTGGTA +
Preference number: 2 (lower is better)
Translates to: HTTLVCLTIHNSCGL*LFLHLGVKSECNLV
Trigger: TACCAGATTGCATTCACTCTTAACCCCCAAATGCAAGAACAACAAAAGGCCACAGGAATTATGGATTGTTAAGCAGACTAGAGTTGTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAATATATATGAGGCTTTaGTCTTCATTGACACCAAAG +
Preference number: 2 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRIYMRL*SSLTPK
Trigger: CTTTGGTGTCAATGAAGACCAAAGCCTCATATATAT...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 90 bp GTTCTTTACAGCCAAATGTTAAGTTCTCTCAGGTCATTTGTTATTTaGGTTGTTTCTTTCTCATTCACTCTGTGGGCTAATAACATCCTA +
Preference number: 2 (lower is better)
Translates to: VLYSQMLSSLRSFVI*VVSFSFTLWANNIL
Trigger: TAGGATGTTATTAGCCCACAGAGTGAATGAGAAAGAAACAACCAAAATAACAAATGACCTGAGAGAACTTAACATTTGGCTGTAAAGAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp CCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTaGACCTTGCTGCTTACTCCTATGGTCACAGTCAGC +
Preference number: 3 (lower is better)
Translates to: PRQEAEVEMAEG*TLLLTPMVTVS
Trigger: GCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp AAATGGCAGAAGGCTGGACCTTGCTGCTTACTCCTATaGTCACAGTCAGCTGCCTTTTCCAGACAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: KWQKAGPCCLLL*SQSAAFSRQPR
Trigger: CCTGGGCTGTCTGGAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 72 bp AGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTaGTTACTCCTATGGTCACAGTCAGCTGCCTTTTCC +
Preference number: 3 (lower is better)
Translates to: RLKWKWQKAGPC*LLLWSQSAAFS
Trigger: GGAAAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 72 bp AGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTaGTGCTTACTCCTATGGTCACAGTCAGCTGCCTTT +
Preference number: 3 (lower is better)
Translates to: RRLKWKWQKAGP*CLLLWSQSAAF
Trigger: AAAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp GCTTCCGTTTGTCCTTTCTATAATATCAGGGTGCCCTaGTTAGCGTTTGGTTGCTGTGATAAACACCAAGGC +
Preference number: 3 (lower is better)
Translates to: ASVCPFYNIRVP*LAFGCCDKHQG
Trigger: GCCTTGGTGTTTATCACAGCAACCAAACGCTAACCAGGGCACCCTGATATTATAGAAAGGACAAACGGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTTCCTGTGGCCTTTTGTaGTTCTTGCATTTGGGGGTT +
Preference number: 3 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLSCGLL*FLHLGV
Trigger: AACCCCCAAATGCAAGAACAACAAAAGGCCACAGGA...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 72 bp TTCTATAATATCAGGGTGCCCTGGTTAGCGTTTGGTTaGTGTGATAAACACCAAGGCCAAAAGCAACTTGGG +
Preference number: 3 (lower is better)
Translates to: FYNIRVPWLAFG*CDKHQGQKQLG
Trigger: CCCAAGTTGCTTTTGGCCTTGGTGTTTATCACAGCAACCAAACGCTAACCAGGGCACCCTGATATTATAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTAATTCCTGTGGCCTTTaGTTGTTCTTGCATTTGGGG +
Preference number: 3 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLNSCGL*LFLHLG
Trigger: CCCCAAATGCAAGAACAACAAAAGGCCACAGGAATT...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGACTGTGGTCCCAGTGTTaGCTTCCGTTTGTCCTTTCT +
Preference number: 3 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRLWSQC*LPFVLS
Trigger: AGAAAGGACAAACGGAAGCAAACACTGGGACCACAG...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTGGTCCCAGTGTTTGCTTCACATGGGGGTTAACTaGACAGGAAAACTAAGCAAT +
Preference number: 3 (lower is better)
Translates to: HFVIVVKLGLPLWSQCLLHMGVN*TGKLSN
Trigger: ATTGCTTAGTTTTCCTGTCAAGTTAACCCCCATGTG...AAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR GCA 72 bp CTTTTGTTGTTCTTGCATTTGGGGGTTAAGAGTGAATaGAATCTGGTAAAGGAGTCACAGCCATGGGAACTT +
Preference number: 3 (lower is better)
Translates to: LLLFLHLGVKSE*NLVKESQPWEL
Trigger: AAGTTCCCATGGCTGTGACTCCTTTACCAGATTGCATTCACTCTTAACCCCCAAATGCAAGAACAACAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp CACTTTGTCATTGTGGTAAAGTTGGGTTTACCTCTGTaGTCCCAGTGTTTGCTTCCGTTTGTCCTTTCTATA +
Preference number: 3 (lower is better)
Translates to: HFVIVVKLGLPL*SQCLLPFVLSI
Trigger: TATAGAAAGGACAAACGGAAGCAAACACTGGGACCACAGAGGTAAACCCAACTTTACCACAATGACAAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp CTCATTCCCCTTCATTCTCCACATAGAAAGATTTCCTaGTCCACACTGTCCCTATCACTCAATTTCTGGTTA +
Preference number: 3 (lower is better)
Translates to: LIPLHSPHRKIS*STLSLSLNFWL
Trigger: TAACCAGAAATTGAGTGATAGGGACAGTGTGGACCAGGAAATCTTTCTATGTGGAGAATGAAGGGGAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAGGCCTTTTGTTGTTCTaGCATTTGGGGGTTAAGAGT +
Preference number: 3 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRGLLLF*HLGVKS
Trigger: ACTCTTAACCCCCAAATGCAAGAACAACAAAAGGCC...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGATTAGTCAAGCCCTGTTaGTTCACTGATGGACAGACA +
Preference number: 3 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRLVKPC*FTDGQT
Trigger: TGTCTGTCCATCAGTGAACAAACAGGGCTTGACTAA...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGATTACAGTTAGGTTTCTaGCACCTCAGAGATAATTTC +
Preference number: 3 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRLQLGF*HLRDNF
Trigger: GAAATTATCTCTGAGGTGCAAGAAACCTAACTGTAA...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR-3UTR CAA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGAATTAAAGTTCTGAGGTaGAGTTTACAGCCCAATAGA +
Preference number: 3 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRIKVLR*SLQPNR
Trigger: TCTATTGGGCTGTAAACTCAACCTCAGAACTTTAAT...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 72 bp AAGAATCTGCTAATTAGTCAAGCCCTGTTTGTTCACTaGTGGACAGACACAATTCTGAACGCTTACTATTCT +
Preference number: 3 (lower is better)
Translates to: KNLLISQALFVH*WTDTILNAYYS
Trigger: AGAATAGTAAGCGTTCAGAATTGTGTCTGTCCATCAGTGAACAAACAGGGCTTGACTAATTAGCAGATTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CCA 72 bp AAGAGTGAATGCAATCTGGTAAAGGAGTCACAGCCATaGGAACTTTTTATTTCAATGCTTTACAACTTAGTG +
Preference number: 3 (lower is better)
Translates to: KSECNLVKESQP*ELFISMLYNLV
Trigger: CACTAAGTTGTAAAGCATTGAAATAAAAAGTTCCCATGGCTGTGACTCCTTTACCAGATTGCATTCACTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 72 bp CTTGCTTTCTATTCAGCTTGTCTCATGACACATGATTaGTCAATAGATTCATTTTGTCTTAGTGCTAACATG +
Preference number: 3 (lower is better)
Translates to: LAFYSACLMTHD*SIDSFCLSANM
Trigger: CATGTTAGCACTAAGACAAAATGAATCTATTGATCAATCATGTGTCATGAGACAAGCTGAATAGAAAGCAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR TCA 72 bp GCTTATATAACCCTGTCTCCCAGGTCTTTGATTGATTaGATACAAATTACTTGCAAACTTAACTCAAATAGC +
Preference number: 3 (lower is better)
Translates to: AYITLSPRSLID*IQITCKLNSNS
Trigger: GCTATTTGAGTTAAGTTTGCAAGTAATTTGTATTCAATCAATCAAAGACCTGGGAGACAGGGTTATATAAGC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR GCA 90 bp CAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCTTACTCAAGAGGATTCTCAGGTaGTCGGCCACAGGGAACCCC +
Preference number: 4 (lower is better)
Translates to: QGRRLKWKWQKAGPCCLLKRILR*SATGNP
Trigger: GGGGTTCCCTGTGGCCGAGCACCTGAGAATCCTCTT...GAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR GCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCGGTTGGTGTCCAGCCTaGTTGTCTGCTTTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCGWCPA*LSALAS
Trigger: TGAAGCCAAAGCAGACAAGCAGGCTGGACACCAACC...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 72 bp CAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTaGCTGCTTACTCCTATGGTCACAGTCAGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QEAEVEMAEGWT*LLTPMVTVSCL
Trigger: AAGGCAGCTGACTGTGACCATAGGAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR GCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCACAAAGGAGATGGTTTaGCTCCCTGACAGAAAGATG +
Preference number: 4 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCTKEMV*LPDRKM
Trigger: CATCTTTCTGTCAGGGAGGCAAACCATCTCCTTTGT...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR CCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCGGAGAGATTTGCCAGTaGCCCAAAATCACAGAAAAA +
Preference number: 4 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCGEICQ*PKITEK
Trigger: TTTTTCTGTGATTTTGGGCCACTGGCAAATCTCTCC...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR CCA 90 bp GGAAGCCAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCGCATCTCAACAGACATaGTATCTGAACAGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: GSQGRRLKWKWQKAGPCCASQQT*YLNRRD
Trigger: ATCTCTCCTGTTCAGATACCATGTCTGTTGAGATGC...GCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTGGCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR TCA 90 bp CAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCTTACTCAACAGACATGGTATCTaGACAGGAGAGATTTGCCAG +
Preference number: 4 (lower is better)
Translates to: QGRRLKWKWQKAGPCCLLNRHGI*TGEICQ
Trigger: CTGGCAAATCTCTCCTGTTCAGATACCATGTCTGTT...GAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR CCA 90 bp CAAGGCAGGAGGCTGAAGTGGAAATGGCAGAAGGCTGGACCTTGCTGCTTACTCTGCTCCTGTGATATCTaGGTAATTGAACCCTGGACA +
Preference number: 4 (lower is better)
Translates to: QGRRLKWKWQKAGPCCLLCSCDI*VIEPWT
Trigger: TGTCCAGGGTTCAATTACCCAGATATCACAGGAGCA...GAGTAAGCAGCAAGGTCCAGCCTTCTGCCATTTCCACTTCAGCCTCCTGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR TCA 90 bp AGACAGCCCAGGCCTATCTGTCCTAGGAAGAGGAAAACACTACCCATGTGTGCTTTAGAGAGAGGACAATaGGATGAGAGGAACAGGTGG +
Preference number: 4 (lower is better)
Translates to: RQPRPICPRKRKTLPMCALERGQ*DERNRW
Trigger: CCACCTGTTCCTCTCATCTCATTGTCCTCTCTCTAA...AGCACACATGGGTAGTGTTTTCCTCTTCCTAGGACAGATAGGCCTGGGCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR TCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGACCACAAGAGCCTGTGTaGAGCAAGCCACAAAGGAGA +
Preference number: 4 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRPQEPV*SKPQRR
Trigger: TCTCCTTTGTGGCTTGCTTCACACAGGCTCTTGTGG...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR TCA 90 bp GAAAGCCAGAAGGGCCTAGACAAATGTATATTTGGAATACCAATGCCGAAAAGACAACTGGACCAGCCATaGAGAGGAATCCCAAAACTA +
Preference number: 4 (lower is better)
Translates to: ESQKGLDKCIFGIPMPKRQLDQP*RGIPKL
Trigger: TAGTTTTGGGATTCCTCTTCATGGCTGGTCCAGTTG...TCTTTTCGGCATTGGTATTCCAAATATACATTTGTCTAGGCCCTTCTGGCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 72 bp TTAACAATCCATAATTCCTGTGGCCTTTTGTTGTTCTaGCATTTGGGGGTTAAGAGTGAATGCAATCTGGTA +
Preference number: 4 (lower is better)
Translates to: LTIHNSCGLLLF*HLGVKSECNLV
Trigger: TACCAGATTGCATTCACTCTTAACCCCCAAATGCAAGAACAACAAAAGGCCACAGGAATTATGGATTGTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 72 bp ACATCCTATCTTTCCACTCCTATTAAAGTTCTGAGGTaGAGTTTACAGCCCAATAGAAGTTCCATTATGATA +
Preference number: 4 (lower is better)
Translates to: TSYLSTPIKVLR*SLQPNRSSIMI
Trigger: TATCATAATGGAACTTCTATTGGGCTGTAAACTCAACCTCAGAACTTTAATAGGAGTGGAAAGATAGGATGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
3UTR CAA 72 bp TCATCGATAAATTTTAAATTCTTGGTACTCATTAGTTaGATTCACCATTCACAACTAAAGCCCCAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: SSINFKFLVLIS*IHHSQLKPQSL
Trigger: GAGAGACTGGGGCTTTAGTTGTGAATGGTGAATCAAACTAATGAGTACCAAGAATTTAAAATTTATCGATGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS CCA 90 bp AAAGGGAAGGTGCACTGCTCCTGTGATATCTGGGTAATTGAACCCTaGACAGTGCATCCCTCAGAGCCTGGTGGACCTGCTTGTTTCTCA +
Preference number: 5 (lower is better)
Translates to: KGKVHCSCDIWVIEP*TVHPSEPGGPACFS
Trigger: TGAGAAACAAGCAGGTCCACCAGGCTCTGAGGGATGCACTGTCCAGGGTTCAATTACCCAGATATCACAGGAGCAGTGCACCTTCCCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS GCA 90 bp AAAACCACAAGAGCCTGTGTGAAGCAAGCCACAAAGGAGATGGTTTaGCTCCCTGACAGAAAGATGGCGAGCAGCTGGGGGATAACTGTA +
Preference number: 5 (lower is better)
Translates to: KTTRACVKQATKEMV*LPDRKMASSWGITV
Trigger: TACAGTTATCCCCCAGCTGCTCGCCATCTTTCTGTCAGGGAGGCAAACCATCTCCTTTGTGGCTTGCTTCACACAGGCTCTTGTGGTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS-3UTR CAA 90 bp AGACAGCCCAGGCCTATCTGTCCTAGGAAGAGGAAAACACTACCCATGTGTGCTCCCATGTCCTATTCCTaGTTTCCTCTGCCATCAGCT +
Preference number: 5 (lower is better)
Translates to: RQPRPICPRKRKTLPMCAPMSYS*FPLPSA
Trigger: AGCTGATGGCAGAGGAAACAAGGAATAGGACATGGG...AGCACACATGGGTAGTGTTTTCCTCTTCCTAGGACAGATAGGCCTGGGCTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS-3UTR CAA 90 bp AGACAGCCCAGGCCTATCTGTCCTAGGAAGAGGAAAACACTACCCATGTGTGCTCTGAACAGGAGAGATTaGCCAGTGGCCCAAAATCAC +
Preference number: 5 (lower is better)
Translates to: RQPRPICPRKRKTLPMCALNRRD*PVAQNH
Trigger: GTGATTTTGGGCCACTGGCAAATCTCTCCTGTTCAG...AGCACACATGGGTAGTGTTTTCCTCTTCCTAGGACAGATAGGCCTGGGCTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220008.2
CDS TCA 90 bp AAAAAGCTTTCTGTCTCTCCCTGGCCGAAGGGAGACCCACTATTGTaGCCACTATGTTGCTGTATGCAAAGATGGCTACCAGAAGGGAAC +
Preference number: 5 (lower is better)
Translates to: KKLSVSPWPKGDPLL*PLCCCMQRWLPEGN
Trigger: GTTCCCTTCTGGTAGCCATCTTTGCATACAGCAACATAGTGGTCACAATAGTGGGTCTCCCTTCGGCCAGGGAGAGACAGAAAGCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS TCA 72 bp CAGTTGCCCCCAGGACAAAAACCACAAGAGCCTGTGTaGAGCAAGCCACAAAGGAGATGGTTTGCCTCCCTG +
Preference number: 6 (lower is better)
Translates to: QLPPGQKPQEPV*SKPQRRWFASL
Trigger: CAGGGAGGCAAACCATCTCCTTTGTGGCTTGCTTCACACAGGCTCTTGTGGTTTTTGTCCTGGGGGCAACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS CAA 72 bp GGTGTCACTACCATGTTCACAAGAGCAGCCTCTCGGTaGGTGTCCAGCCTGCTTGTCTGCTTTGGCTTCATG +
Preference number: 6 (lower is better)
Translates to: GVTTMFTRAASR*VSSLLVCFGFM
Trigger: CATGAAGCCAAAGCAGACAAGCAGGCTGGACACCAACCGAGAGGCTGCTCTTGTGAACATGGTAGTGACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS TCA 72 bp TGTGAAGCAAGCCACAAAGGAGATGGTTTGCCTCCCTaGCAGAAAGATGGCGAGCAGCTGGGGGATAACTGT +
Preference number: 6 (lower is better)
Translates to: CEASHKGDGLPP*QKDGEQLGDNC
Trigger: ACAGTTATCCCCCAGCTGCTCGCCATCTTTCTGTCAGGGAGGCAAACCATCTCCTTTGTGGCTTGCTTCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS CCA 72 bp GTGTCACTACCATGTTCACAAGAGCAGCCTCTCGGTTaGTGTCCAGCCTGCTTGTCTGCTTTGGCTTCATGT +
Preference number: 6 (lower is better)
Translates to: VSLPCSQEQPLG*CPACLSALASC
Trigger: ACATGAAGCCAAAGCAGACAAGCAGGCTGGACACCAACCGAGAGGCTGCTCTTGTGAACATGGTAGTGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS CAA 90 bp TGTCTCTCCCTGGCCGAAGGGAGACCCACTATTGTGACCACTATGTaGCTGTATGCAAAGATGGCTACCAGAAGGGAACCAAAAAGCACA +
Preference number: 6 (lower is better)
Translates to: CLSLAEGRPTIVTTM*LYAKMATRREPKST
Trigger: TGTGCTTTTTGGTTCCCTTCTGGTAGCCATCTTTGCATACAGCAACATAGTGGTCACAATAGTGGGTCTCCCTTCGGCCAGGGAGAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2
CDS CAA 90 bp TTCAAAAGGGGTGTCACTACCATGTTCACAAGAGCAGCCTCTCGGTaGGTGTCCAGCCTGCTTGTCTGCTTTGGCTTCATGTATATAAAT +
Preference number: 6 (lower is better)
Translates to: FKRGVTTMFTRAASR*VSSLLVCFGFMYIN
Trigger: ATTTATATACATGAAGCCAAAGCAGACAAGCAGGCTGGACACCAACCGAGAGGCTGCTCTTGTGAACATGGTAGTGACACCCCTTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000121958.2
ENSMUST00000220008.2