Pregenerated sensors for OLFR206 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066257

Ensembl transcript IDs: ENSMUST00000084791.4, ENSMUST00000207927.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTGAAGAAACGGAGAGCAGGTaGGCACTGCAGGTGAAGAAA	+
Preference number: 4 (lower is better) Translates to: YALQVRAKVVEWTSKYSEETESR*ALQVKK Trigger: TTTCTTCACCTGCAGTGCCCACCTGCTCTCCGTTTC...TTCAGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR TCA 90 bp	TATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTGAAAGGAGGAGGGGAACTTaGAGCTCTGAACGATCTGTT	+
Preference number: 4 (lower is better) Translates to: YALQVRAKVVEWTSKYSERRRGT*SSERSV Trigger: AACAGATCGTTCAGAGCTTCAAGTTCCCCTCCTCCT...TTCAGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR TCA 90 bp	TACTATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTATCCTTTTGTTTACCTaGTCCAGACCCAGGGCTCAC	+
Preference number: 4 (lower is better) Translates to: YYALQVRAKVVEWTSKYSILLFT*SRPRAH Trigger: GTGAGCCCTGGGTCTGGATCAGGTAAACAAAAGGAT...AGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR TCA 90 bp	TACTATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTGAGGGTCCTTCCAGATaGGAAAGATTAAGCCAAGGT	+
Preference number: 4 (lower is better) Translates to: YYALQVRAKVVEWTSKYSEGPSR*ERLSQG Trigger: ACCTTGGCTTAATCTTTCTCATCTGGAAGGACCCTC...AGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR TCA 90 bp	TACTATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTTGGGGTCACTGTGGTTaGAATACAAGCATCAGCAAA	+
Preference number: 4 (lower is better) Translates to: YYALQVRAKVVEWTSKYSWGHCG*NTSISK Trigger: TTTGCTGATGCTTGTATTTCAACCACAGTGACCCCA...AGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR CCA 90 bp	TATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTGAACAGTGCAGAGTCTTTTaGACATCACCACTAGATAGA	+
Preference number: 4 (lower is better) Translates to: YALQVRAKVVEWTSKYSEQCRVF*TSPLDR Trigger: TCTATCTAGTGGTGATGTCCAAAAGACTCTGCACTG...TTCAGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS-3UTR TCA 90 bp	TACTATGCACTTCAAGTAAGAGCAAAGGTTGTAGAATGGACTTCAAAATACTCTGATCTGTTATTCCTCTaGGAACAAATTCTGTCAGCA	+
Preference number: 4 (lower is better) Translates to: YYALQVRAKVVEWTSKYSDLLFL*EQILSA Trigger: TGCTGACAGAATTTGTTCTCAGAGGAATAACAGATC...AGAGTATTTTGAAGTCCATTCTACAACCTTTGCTCTTACTTGAAGTGCATAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207927.3
CDS CCA 72 bp	AGAAGCACAAATAAAAACGACCAATGTGTTAAGAGATaGATCTGTGCAAGAAATTGTATACAGTTGCAAGAT	+
Preference number: 6 (lower is better) Translates to: RSTNKNDQCVKR*ICARNCIQLQD Trigger: ATCTTGCAACTGTATACAATTTCTTGCACAGATCCATCTCTTAACACATTGGTCGTTTTTATTTGTGCTTCT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000084791.4 ENSMUST00000207927.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu