RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR172 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071510

Ensembl transcript IDs: ENSMUST00000095991.3, ENSMUST00000214139.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACAAGTGTTCTTGTTGTCTTTTGGATGTTTACCACCCCCAACATTaGCAGAGGCCGTCAGCCAGGCAGAAGACTATTTGGATACGTGAA +
Preference number: 1 (lower is better)
Translates to: YKCSCCLLDVYHPQH*QRPSARQKTIWIRE
Trigger: TTCACGTATCCAAATAGTCTTCTGCCTGGCTGACGGCCTCTGTCAATGTTGGGGGTGGTAAACATCCAAAAGACAACAAGAACACTTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR CCA 90 bp TTACCTATATTTCCCCCTGGCACATTTCTGCTTAAGAAAGCATTATaGACTTTAACACTTATGCATAAACTTTACAAGCATTTCCCCTGT +
Preference number: 1 (lower is better)
Translates to: LPIFPPGTFLLKKAL*TLTLMHKLYKHFPC
Trigger: ACAGGGGAAATGCTTGTAAAGTTTATGCATAAGTGTTAAAGTCCATAATGCTTTCTTAAGCAGAAATGTGCCAGGGGGAAATATAGGTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR-3UTR GCA 90 bp ATGCATCCATTTCCATCCTTATTCCATCTTCAACAGAGTAGTACTCAACATACGCCCCTGGCACATTTCTaGTTAAGAAAGCATTATGGA +
Preference number: 2 (lower is better)
Translates to: MHPFPSLFHLQQSSTQHTPLAHF*LRKHYG
Trigger: TCCATAATGCTTTCTTAAGCAGAAATGTGCCAGGGG...CGTATGTTGAGTACTACTCTGTTGAAGATGGAATAAGGATGGAAATGGATGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR-3UTR CCA 90 bp AGTAGTACTCAACATACGCTCTTAGAAGAGCTTCTCAGTCTTCACTTTCCACAAAGGCAGAAGACTATTTaGATACGTGAATCTCAAAGT +
Preference number: 2 (lower is better)
Translates to: SSTQHTLLEELLSLHFPQRQKTI*IRESQS
Trigger: ACTTTGAGATTCACGTATCCAAATAGTCTTCTGCCT...TTGTGGAAAGTGAAGACTGAGAAGCTCTTCTAAGAGCGTATGTTGAGTACTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR TCA 72 bp TCTTGTTGTCTTTTGGATGTTTACCACCCCCAACATTaGCAGAGGCCGTCAGCCAGGCAGAAGACTATTTGG +
Preference number: 3 (lower is better)
Translates to: SCCLLDVYHPQH*QRPSARQKTIW
Trigger: CCAAATAGTCTTCTGCCTGGCTGACGGCCTCTGTCAATGTTGGGGGTGGTAAACATCCAAAAGACAACAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR-3UTR CAA 90 bp AGTAGTACTCAACATACGCTCTTAGAAGAGCTTCTCAGTCTTCACTTTCCACAATGTTCTTGTTGTCTTTaGGATGTTTACCACCCCCAA +
Preference number: 3 (lower is better)
Translates to: SSTQHTLLEELLSLHFPQCSCCL*DVYHPQ
Trigger: TTGGGGGTGGTAAACATCCAAAAGACAACAAGAACA...TTGTGGAAAGTGAAGACTGAGAAGCTCTTCTAAGAGCGTATGTTGAGTACTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR-3UTR CAA 90 bp AGTAGTACTCAACATACGCTCTTAGAAGAGCTTCTCAGTCTTCACTTTCCACAACTACAAGTGTTCTTGTaGTCTTTTGGATGTTTACCA +
Preference number: 3 (lower is better)
Translates to: SSTQHTLLEELLSLHFPQLQVFL*SFGCLP
Trigger: TGGTAAACATCCAAAAGACAACAAGAACACTTGTAG...TTGTGGAAAGTGAAGACTGAGAAGCTCTTCTAAGAGCGTATGTTGAGTACTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR TCA 72 bp AGCTTACCCAAGTGTTCATGCTCTAAGCTACTGAAATaGATCGATTATAAATGCTTATATGACGGTAGTGTA +
Preference number: 3 (lower is better)
Translates to: SLPKCSCSKLLK*IDYKCLYDGSV
Trigger: TACACTACCGTCATATAAGCATTTATAATCGATTCATTTCAGTAGCTTAGAGCATGAACACTTGGGTAAGCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR TCA 72 bp ACATTAGCTTACCCAAGTGTTCATGCTCTAAGCTACTaGAATGAATCGATTATAAATGCTTATATGACGGTA +
Preference number: 3 (lower is better)
Translates to: TLAYPSVHALSY*NESIINAYMTV
Trigger: TACCGTCATATAAGCATTTATAATCGATTCATTTCAGTAGCTTAGAGCATGAACACTTGGGTAAGCTAATGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
CDS-3UTR GCA 90 bp TTGTCTTTTGGATGTTTACCACCCCCAACATTGACAGAGGCCGTCAGCCAGGCAGAAGAGAACGTTCTGTaGAAATCAGAATCACCAAGC +
Preference number: 4 (lower is better)
Translates to: LSFGCLPPPTLTEAVSQAEENVL*KSESPS
Trigger: GCTTGGTGATTCTGATTTGCACAGAACGTTCTCTTC...TGCCTGGCTGACGGCCTCTGTCAATGTTGGGGGTGGTAAACATCCAAAAGACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
3UTR CAA 72 bp TTCTTGTTGTCTTTTGGATGTTTACCACCCCCAACATaGACAGAGGCCGTCAGCCAGGCAGAAGACTATTTG +
Preference number: 4 (lower is better)
Translates to: FLLSFGCLPPPT*TEAVSQAEDYL
Trigger: CAAATAGTCTTCTGCCTGGCTGACGGCCTCTGTCAATGTTGGGGGTGGTAAACATCCAAAAGACAACAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
CDS-3UTR TCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAGCAATACAAGCTCATTaGCATAGGGGTCAACACAGG +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITAIQAH*HRGQHR
Trigger: CCTGTGTTGACCCCTATGTCAATGAGCTTGTATTGC...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS-3UTR TCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAGGACACAACCTATTGTaGAAACTTGGATTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITGHNLL*KLGLGL
Trigger: CAGCCCCAATCCAAGTTTTCACAATAGGTTGTGTCC...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS-3UTR TCA 90 bp ATGCATCCATTTCCATCCTTATTCCATCTTCAACAGAGTAGTACTCAACATACGAATAATAGCCCCACATaGACCATAGAATGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: MHPFPSLFHLQQSSTQHTNNSPT*TIECRF
Trigger: AAACCTGCATTCTATGGTTCATGTGGGGCTATTATT...CGTATGTTGAGTACTACTCTGTTGAAGATGGAATAAGGATGGAAATGGATGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
CDS-3UTR CCA 90 bp CCTATATTTCCCCCTGGCACATTTCTGCTTAAGAAAGCATTATGGACTTTAACAAAACAAAATAGCAGCTaGCATGTCCTTATCACCTTC +
Preference number: 4 (lower is better)
Translates to: PIFPPGTFLLKKALWTLTKQNSS*HVLITF
Trigger: GAAGGTGATAAGGACATGCCAGCTGCTATTTTGTTT...TGTTAAAGTCCATAATGCTTTCTTAAGCAGAAATGTGCCAGGGGGAAATATAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000214139.2
CDS-3UTR TCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAAACTTGGATTGGGGCTaGAAAGACAAGCAATACAAG +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITNLDWG*KDKQYK
Trigger: CTTGTATTGCTTGTCTTTTCAGCCCCAATCCAAGTT...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS-3UTR GCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAGAAGAGAACGTTCTGTaGAAATCAGAATCACCAAGC +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITEENVL*KSESPS
Trigger: GCTTGGTGATTCTGATTTGCACAGAACGTTCTCTTC...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS-3UTR TCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAAATAATAGCCCCACATaGACCATAGAATGCAGGTTT +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITNNSPT*TIECRF
Trigger: AAACCTGCATTCTATGGTTCATGTGGGGCTATTATT...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS-3UTR CCA 90 bp CCCTGTGTAATTTCATGTGAAGTTTCTGGTGAATTGAGTTTTTACACGATAACAAAACAAAATAGCAGCTaGCATGTCCTTATCACCTTC +
Preference number: 4 (lower is better)
Translates to: PCVISCEVSGELSFYTITKQNSS*HVLITF
Trigger: GAAGGTGATAAGGACATGCCAGCTGCTATTTTGTTT...TGTTATCGTGTAAAAACTCAATTCACCAGAAACTTCACATGAAATTACACAGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2
CDS TCA 72 bp GAGGACACAACCTATTGTGAAAACTTGGATTGGGGCTaGAAAGACAAGCAATACAAGCTCATTGACATAGGG +
Preference number: 6 (lower is better)
Translates to: EDTTYCENLDWG*KDKQYKLIDIG
Trigger: CCCTATGTCAATGAGCTTGTATTGCTTGTCTTTTCAGCCCCAATCCAAGTTTTCACAATAGGTTGTGTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095991.3
ENSMUST00000214139.2