RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for OLFR1513 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095030

Ensembl transcript IDs: ENSMUST00000089739.2, ENSMUST00000215147.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCATTCACCTACCTAGAGTAGCCTTAGGAAGTCTGAAGTTAGGCTaGTTAGGAACCCAGCAAACATCCATAGTTCCTTGGGTAGCACTA +
Preference number: 1 (lower is better)
Translates to: PIHLPRVALGSLKLG*LGTQQTSIVPWVAL
Trigger: TAGTGCTACCCAAGGAACTATGGATGTTTGCTGGGTTCCTAACCAGCCTAACTTCAGACTTCCTAAGGCTACTCTAGGTAGGTGAATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR TCA 90 bp CCTGGCGGCTCAGGGAAAGCTTGCTCATCTCACAAACATGAACCATaGAGTGCTCATTTAGACATTTTGACTAGTTATGCTGGTGCTCTG +
Preference number: 1 (lower is better)
Translates to: PGGSGKACSSHKHEP*SAHLDILTSYAGAL
Trigger: CAGAGCACCAGCATAACTAGTCAAAATGTCTAAATGAGCACTTCATGGTTCATGTTTGTGAGATGAGCAAGCTTTCCCTGAGCCGCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 90 bp TCAAACCTGGAGGTAAGAGCTAGTGCAGACTCCAAGGAGGGGAGCTaGTTACTGTCTTTCTCAATTTGCTTTCTTATAGAAGCTGGAAAC +
Preference number: 1 (lower is better)
Translates to: SNLEVRASADSKEGS*LLSFSICFLIEAGN
Trigger: GTTTCCAGCTTCTATAAGAAAGCAAATTGAGAAAGACAGTAAGCAGCTCCCCTCCTTGGAGTCTGCACTAGCTCTTACCTCCAGGTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 90 bp GCTCATTTAGACATTTTGACTAGTTATGCTGGTGCTCTGGCCCATTaGCTGGTTTTCTCTCCATGTACAATTTCACACTGGGCTTTGCCT +
Preference number: 1 (lower is better)
Translates to: AHLDILTSYAGALAH*LVFSPCTISHWALP
Trigger: AGGCAAAGCCCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGCATAACTAGTCAAAATGTCTAAATGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR TCA 90 bp GAGGTGTGTGTTGAAAAGCAAACTGTAGACTATTATAGAAGGGCTTaGCTAATGATGGCCAGGGCACCAAAGGATCACTGGGTGCTTTTA +
Preference number: 1 (lower is better)
Translates to: EVCVEKQTVDYYRRA*LMMARAPKDHWVLL
Trigger: TAAAAGCACCCAGTGATCCTTTGGTGCCCTGGCCATCATTAGTCAAGCCCTTCTATAATAGTCTACAGTTTGCTTTTCAACACACACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 90 bp CTGAAGTTAGGCTGGTTAGGAACCCAGCAAACATCCATAGTTCCTTaGGTAGCACTAGATGTTGAGGTGTGTGTTGAAAAGCAAACTGTA +
Preference number: 1 (lower is better)
Translates to: LKLGWLGTQQTSIVP*VALDVEVCVEKQTV
Trigger: TACAGTTTGCTTTTCAACACACACCTCAACATCTAGTGCTACCCAAGGAACTATGGATGTTTGCTGGGTTCCTAACCAGCCTAACTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 90 bp CAGGGCACCAAAGGATCACTGGGTGCTTTTAGAATGTTACTCATCTaGGAATATACGTATTCTGCCTTAGTTAAGGTTTTGGTTGGTATG +
Preference number: 1 (lower is better)
Translates to: QGTKGSLGAFRMLLI*EYTYSALVKVLVGM
Trigger: CATACCAACCAAAACCTTAACTAAGGCAGAATACGTATATTCCCAGATGAGTAACATTCTAAAAGCACCCAGTGATCCTTTGGTGCCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CCA 90 bp CACCTTTCGGCCCTGGCGGCTCAGGGAAAGCTTGCTCATCTCACAAACATGAACGTTATGCTGGTGCTCTaGCCCATTGCCTGGTTTTCT +
Preference number: 2 (lower is better)
Translates to: HLSALAAQGKLAHLTNMNVMLVL*PIAWFS
Trigger: AGAAAACCAGGCAATGGGCCAGAGCACCAGCATAAC...GTTCATGTTTGTGAGATGAGCAAGCTTTCCCTGAGCCGCCAGGGCCGAAAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR GCA 90 bp GCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTGGTCCAAGGAGGGGAGCTaGTTACTGTCTTTCTCAATT +
Preference number: 2 (lower is better)
Translates to: AGALAHCLVFSPCTISHWSKEGS*LLSFSI
Trigger: AATTGAGAAAGACAGTAAGCAGCTCCCCTCCTTGGA...CCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CCA 90 bp GCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTGGACATCCATAGTTCCTTaGGTAGCACTAGATGTTGAG +
Preference number: 2 (lower is better)
Translates to: AGALAHCLVFSPCTISHWTSIVP*VALDVE
Trigger: CTCAACATCTAGTGCTACCCAAGGAACTATGGATGT...CCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CCA 90 bp GCACCATTTCAAGAGAAGGTTTATTCTTTTAGCAGGCAAGAGTCCTCTTCACCCTTCCATCTCATTGTGTaGATCTGTGTGGCAGGCTCC +
Preference number: 2 (lower is better)
Translates to: APFQEKVYSFSRQESSSPFHLIV*ICVAGS
Trigger: GGAGCCTGCCACACAGATCCACACAATGAGATGGAA...GGGTGAAGAGGACTCTTGCCTGCTAAAAGAATAAACCTTCTCTTGAAATGGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CCA 90 bp GCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTGGAGAATGTTACTCATCTaGGAATATACGTATTCTGCC +
Preference number: 2 (lower is better)
Translates to: AGALAHCLVFSPCTISHWRMLLI*EYTYSA
Trigger: GGCAGAATACGTATATTCCCAGATGAGTAACATTCT...CCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 72 bp GTGTTAATGGGTGCAAACCAAAGTTCCCATGGCCTTTaGTCACACCTTTCGGCCCTGGCGGCTCAGGGAAAG +
Preference number: 3 (lower is better)
Translates to: VLMGANQSSHGL*SHLSALAAQGK
Trigger: CTTTCCCTGAGCCGCCAGGGCCGAAAGGTGTGAGCAAAGGCCATGGGAACTTTGGTTTGCACCCATTAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 72 bp TGTGCCAGTGTTAATGGGTGCAAACCAAAGTTCCCATaGCCTTTGCTCACACCTTTCGGCCCTGGCGGCTCA +
Preference number: 3 (lower is better)
Translates to: CASVNGCKPKFP*PLLTPFGPGGS
Trigger: TGAGCCGCCAGGGCCGAAAGGTGTGAGCAAAGGCCATGGGAACTTTGGTTTGCACCCATTAACACTGGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 72 bp CAGGAAGCCTCCCTGAAATCCAAACGCAAGACTAAGTaGAAATCCGGGTGTCTCCTCAGAAGAGGAGAGGTG +
Preference number: 3 (lower is better)
Translates to: QEASLKSKRKTK*KSGCLLRRGEV
Trigger: CACCTCTCCTCTTCTGAGGAGACACCCGGATTTCCACTTAGTCTTGCGTTTGGATTTCAGGGAGGCTTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CAA 90 bp AGCAGGCAAGAGTCCTCTTCACCCATTCACCTACCTAGAGTAGCCTTAGGAAGTTATGGCTGCTGGAAGTaGTTTGTCTGGAGGAGAAAC +
Preference number: 3 (lower is better)
Translates to: SRQESSSPIHLPRVALGSYGCWK*FVWRRN
Trigger: GTTTCTCCTCCAGACAAACAACTTCCAGCAGCCATA...ACTTCCTAAGGCTACTCTAGGTAGGTGAATGGGTGAAGAGGACTCTTGCCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 72 bp GGCTGGTTAGGAACCCAGCAAACATCCATAGTTCCTTaGGTAGCACTAGATGTTGAGGTGTGTGTTGAAAAG +
Preference number: 3 (lower is better)
Translates to: GWLGTQQTSIVP*VALDVEVCVEK
Trigger: CTTTTCAACACACACCTCAACATCTAGTGCTACCCAAGGAACTATGGATGTTTGCTGGGTTCCTAACCAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CAA 90 bp GCACCATTTCAAGAGAAGGTTTATTCTTTTAGCAGGCAAGAGTCCTCTTCACCCGCTGCTGGAAGTTGTTaGTCTGGAGGAGAAACTAAG +
Preference number: 3 (lower is better)
Translates to: APFQEKVYSFSRQESSSPAAGSC*SGGETK
Trigger: CTTAGTTTCTCCTCCAGACAAACAACTTCCAGCAGC...GGGTGAAGAGGACTCTTGCCTGCTAAAAGAATAAACCTTCTCTTGAAATGGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 72 bp TGTCTGGAGGAGAAACTAAGAATGGCTAGGAGGCTGTaGTTTCCCTTCATCTATGTTCCATCTCATTGTGTG +
Preference number: 3 (lower is better)
Translates to: CLEEKLRMARRL*FPFIYVPSHCV
Trigger: CACACAATGAGATGGAACATAGATGAAGGGAAAGCACAGCCTCCTAGCCATTCTTAGTTTCTCCTCCAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 72 bp GACATTTTGACTAGTTATGCTGGTGCTCTGGCCCATTaGCTGGTTTTCTCTCCATGTACAATTTCACACTGG +
Preference number: 3 (lower is better)
Translates to: DILTSYAGALAH*LVFSPCTISHW
Trigger: CCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGCATAACTAGTCAAAATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 72 bp TGTGCTTTCCCTTCATCTATGTTCCATCTCATTGTGTaGATCTGTGTGGCAGGCTCCACCAATGAGGAAAAA +
Preference number: 3 (lower is better)
Translates to: CAFPSSMFHLIV*ICVAGSTNEEK
Trigger: TTTTTCCTCATTGGTGGAGCCTGCCACACAGATCCACACAATGAGATGGAACATAGATGAAGGGAAAGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR GCA 72 bp GAGGTAAGAGCTAGTGCAGACTCCAAGGAGGGGAGCTaGTTACTGTCTTTCTCAATTTGCTTTCTTATAGAA +
Preference number: 3 (lower is better)
Translates to: EVRASADSKEGS*LLSFSICFLIE
Trigger: TTCTATAAGAAAGCAAATTGAGAAAGACAGTAAGCAGCTCCCCTCCTTGGAGTCTGCACTAGCTCTTACCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CAA 90 bp GCACCATTTCAAGAGAAGGTTTATTCTTTTAGCAGGCAAGAGTCCTCTTCACCCACTGTCTTTCTCAATTaGCTTTCTTATAGAAGCTGG +
Preference number: 3 (lower is better)
Translates to: APFQEKVYSFSRQESSSPTVFLN*LSYRSW
Trigger: CCAGCTTCTATAAGAAAGCAAATTGAGAAAGACAGT...GGGTGAAGAGGACTCTTGCCTGCTAAAAGAATAAACCTTCTCTTGAAATGGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR-3UTR CAA 90 bp ATTACACTGATGAATCAGAAAAGAGGAAACAGAGGTATAACTTGCATTCTTTGGCTAACTTGTGTCAGGTaGACAAGGAATCTAGCCAGC +
Preference number: 3 (lower is better)
Translates to: ITLMNQKRGNRGITCILWLTCVR*TRNLAS
Trigger: GCTGGCTAGATTCCTTGTCAACCTGACACAAGTTAG...CCAAAGAATGCAAGTTATACCTCTGTTTCCTCTTTTCTGATTCATCAGTGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CCA 72 bp AAAGGATCACTGGGTGCTTTTAGAATGTTACTCATCTaGGAATATACGTATTCTGCCTTAGTTAAGGTTTTG +
Preference number: 3 (lower is better)
Translates to: KGSLGAFRMLLI*EYTYSALVKVL
Trigger: CAAAACCTTAACTAAGGCAGAATACGTATATTCCCAGATGAGTAACATTCTAAAAGCACCCAGTGATCCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CCA 90 bp GCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTGGCTCAGCCCGGGAGGGTaGGGGACCCCTGTGAGGATG +
Preference number: 4 (lower is better)
Translates to: AGALAHCLVFSPCTISHWLSPGG*GTPVRM
Trigger: CATCCTCACAGGGGTCCCCCACCCTCCCGGGCTGAG...CCAGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR GCA 90 bp AGCAGGCAAGAGTCCTCTTCACCCATTCACCTACCTAGAGTAGCCTTAGGAAGTCCGCCCCATCCAGGATaGCATGGCTGTCAGGTCGCA +
Preference number: 4 (lower is better)
Translates to: SRQESSSPIHLPRVALGSPPHPG*HGCQVA
Trigger: TGCGACCTGACAGCCATGGCATCCTGGATGGGGCGG...ACTTCCTAAGGCTACTCTAGGTAGGTGAATGGGTGAAGAGGACTCTTGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CCA 90 bp CACCTTTCGGCCCTGGCGGCTCAGGGAAAGCTTGCTCATCTCACAAACATGAACCAAGGAAGATGTACATaGGGCGAGCATGGAGCTGCG +
Preference number: 4 (lower is better)
Translates to: HLSALAAQGKLAHLTNMNQGRCT*GEHGAA
Trigger: CGCAGCTCCATGCTCGCCCCATGTACATCTTCCTTG...GTTCATGTTTGTGAGATGAGCAAGCTTTCCCTGAGCCGCCAGGGCCGAAAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR TCA 90 bp ATGCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTCAGGTCGCAGGTAGGTaGAGGCACAGGGCACATAGT +
Preference number: 4 (lower is better)
Translates to: MLVLWPIAWFSLHVQFHTQVAGR*RHRAHS
Trigger: ACTATGTGCCCTGTGCCTTCACCTACCTGCGACCTG...AGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CAA 72 bp GAGGCTGTGCTTTCCCTTCATCTATGTTCCATCTCATaGTGTGGATCTGTGTGGCAGGCTCCACCAATGAGG +
Preference number: 4 (lower is better)
Translates to: EAVLSLHLCSIS*CGSVWQAPPMR
Trigger: CCTCATTGGTGGAGCCTGCCACACAGATCCACACAATGAGATGGAACATAGATGAAGGGAAAGCACAGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CCA 90 bp GCACCATTTCAAGAGAAGGTTTATTCTTTTAGCAGGCAAGAGTCCTCTTCACCCAAGGTTAGGATGGCTTaGATTGCTCCGTGGATTAAG +
Preference number: 4 (lower is better)
Translates to: APFQEKVYSFSRQESSSPKVRMA*IAPWIK
Trigger: CTTAATCCACGGAGCAATCCAAGCCATCCTAACCTT...GGGTGAAGAGGACTCTTGCCTGCTAAAAGAATAAACCTTCTCTTGAAATGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CCA 90 bp GCACCATTTCAAGAGAAGGTTTATTCTTTTAGCAGGCAAGAGTCCTCTTCACCCTCACTCTTAGTGCTTTaGCTTCCTACCATTCTCCTC +
Preference number: 4 (lower is better)
Translates to: APFQEKVYSFSRQESSSPSLLVL*LPTILL
Trigger: GAGGAGAATGGTAGGAAGCCAAAGCACTAAGAGTGA...GGGTGAAGAGGACTCTTGCCTGCTAAAAGAATAAACCTTCTCTTGAAATGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CAA 72 bp ATTCCCACTTCCCATATGAATCTAACTTGTGTCAGGTaGACAAGGAATCTAGCCAGCACACATAACATCTTT +
Preference number: 4 (lower is better)
Translates to: IPTSHMNLTCVR*TRNLASTHNIF
Trigger: AAAGATGTTATGTGTGCTGGCTAGATTCCTTGTCAACCTGACACAAGTTAGATTCATATGGGAAGTGGGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
3UTR CAA 72 bp ATCTGGGAATATACGTATTCTGCCTTAGTTAAGGTTTaGGTTGGTATGGTAAAACACTATGACAAAAATCAC +
Preference number: 4 (lower is better)
Translates to: IWEYTYSALVKV*VGMVKHYDKNH
Trigger: GTGATTTTTGTCATAGTGTTTTACCATACCAACCAAAACCTTAACTAAGGCAGAATACGTATATTCCCAGAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS CCA 90 bp ATAAAGCTGAGCCACGCATCCCCCAAATGGGATGGGCTTAATGCCTaGAGTGAAGTTCATCATGAGGCGGGGGACGATGATGGTAGAGAT +
Preference number: 5 (lower is better)
Translates to: IKLSHASPKWDGLNA*SEVHHEAGDDDGRD
Trigger: ATCTCTACCATCATCGTCCCCCGCCTCATGATGAACTTCACTCCAGGCATTAAGCCCATCCCATTTGGGGGATGCGTGGCTCAGCTTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000089739.2
ENSMUST00000215147.2
CDS-3UTR CAA 90 bp ATGCTGGTGCTCTGGCCCATTGCCTGGTTTTCTCTCCATGTACAATTTCACACTTTAGGATGGCTTGGATaGCTCCGTGGATTAAGCCAG +
Preference number: 5 (lower is better)
Translates to: MLVLWPIAWFSLHVQFHTLGWLG*LRGLSQ
Trigger: CTGGCTTAATCCACGGAGCAATCCAAGCCATCCTAA...AGTGTGAAATTGTACATGGAGAGAAAACCAGGCAATGGGCCAGAGCACCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CAA 90 bp GTGCTTTCCCTTCATCTATGTTCCATCTCATTGTGTGGATCTGTGTGGCAGGCTCTCACTCTTAGTGCTTaGGCTTCCTACCATTCTCCT +
Preference number: 5 (lower is better)
Translates to: VLSLHLCSISLCGSVWQALTLSA*ASYHSP
Trigger: AGGAGAATGGTAGGAAGCCAAAGCACTAAGAGTGAG...AGCCTGCCACACAGATCCACACAATGAGATGGAACATAGATGAAGGGAAAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS-3UTR CAA 90 bp TTTCCCTTCATCTATGTTCCATCTCATTGTGTGGATCTGTGTGGCAGGCTCCACAAGGTGAACAACTCATaGACTGTGGTATCTGCACAG +
Preference number: 5 (lower is better)
Translates to: FPFIYVPSHCVDLCGRLHKVNNS*TVVSAQ
Trigger: CTGTGCAGATACCACAGTCAATGAGTTGTTCACCTT...GTGGAGCCTGCCACACAGATCCACACAATGAGATGGAACATAGATGAAGGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215147.2
CDS CCA 72 bp AGCCACGCATCCCCCAAATGGGATGGGCTTAATGCCTaGAGTGAAGTTCATCATGAGGCGGGGGACGATGAT +
Preference number: 6 (lower is better)
Translates to: SHASPKWDGLNA*SEVHHEAGDDD
Trigger: ATCATCGTCCCCCGCCTCATGATGAACTTCACTCCAGGCATTAAGCCCATCCCATTTGGGGGATGCGTGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000089739.2
ENSMUST00000215147.2