Pregenerated sensors for OLFR146 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058820

Ensembl transcript IDs: ENSMUST00000073671.3, ENSMUST00000214410.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 72 bp	AAAAATTACCAAGGACTAGTACCAGCAAACATTTTCTaGATACATGGCAATGACTCCCAAGAAGAAGATGTG	+
Preference number: 3 (lower is better) Translates to: KNYQGLVPANIF*IHGNDSQEEDV Trigger: CACATCTTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCCTTGGTAATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR GCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAAAAGTACATAGGGGTGTaGAGGTACGAGCTGAGCAGG	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEEKYIGV*RYELSR Trigger: CCTGCTCAGCTCGTACCTGCACACCCCTATGTACTT...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR CCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAAGCAACAGCTGAGATGTaGGAGCTGCAGGTACTGAAG	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEEATAEM*ELQVLK Trigger: CTTCAGTACCTGCAGCTCCCACATCTCAGCTGTTGC...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR GCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAAAGGAAGAGTGGCAGTTaGAGTTCTGGTTGTTCTGTT	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEERKSGS*SSGCSV Trigger: AACAGAACAACCAGAACTGCAACTGCCACTCTTCCT...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR CCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAACCTTCATCCATCGAATaGGAAGATGATGGGTTCAGA	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEEPSSIE*EDDGFR Trigger: TCTGAACCCATCATCTTCCCATTCGATGGATGAAGG...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR TCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAAAATATACATCCTACATaGGCTGATGCACAAACTATG	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEENIHPT*ADAQTM Trigger: CATAGTTTGTGCATCAGCTCATGTAGGATGTATATT...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS-3UTR CCA 90 bp	GGACTAGTACCAGCAAACATTTTCTGGATACATGGCAATGACTCCCAAGAAGAAAGAATTTGTTCACTGTaGATTGATTGCCTTTTTCCA	+
Preference number: 4 (lower is better) Translates to: GLVPANIFWIHGNDSQEERICSL*IDCLFP Trigger: TGGAAAAAGGCAATCAATCCACAGTGAACAAATTCT...TTCTTCTTGGGAGTCATTGCCATGTATCCAGAAAATGTTTGCTGGTACTAGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214410.2
CDS TCA 72 bp	AGAAGACACTTTTCCTTCATCCATCGAATGGGAAGATaGTGGGTTCAGATACGTAAATCCAGCAGAGATATA	+
Preference number: 6 (lower is better) Translates to: RRHFSFIHRMGR*WVQIRKSSRDI Trigger: TATATCTCTGCTGGATTTACGTATCTGAACCCATCATCTTCCCATTCGATGGATGAAGGAAAAGTGTCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073671.3 ENSMUST00000214410.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu